CmaCh15G001080 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G001080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Cma_Chr15 : 492448 .. 492699 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAATGAGAAGAAACAAGGAGGAGACAACTTCTTTCAAATGCCACTTCACTATCCCAGATATTCCAAGATGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCCTCGAGTACGGTCTCCCAACTCATGGCAACTTGCCCTACAAACGACAATTCGCAATGGGTGCTTTCCTCTGGCACGATTTCCACCCTACCTTTAAATTAGATCCCTCCCTTCTCAATAACAAACTTATGTAG

mRNA sequence

ATGGAGAACAATGAGAAGAAACAAGGAGGAGACAACTTCTTTCAAATGCCACTTCACTATCCCAGATATTCCAAGATGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCCTCGAGTACGGTCTCCCAACTCATGGCAACTTGCCCTACAAACGACAATTCGCAATGGGTGCTTTCCTCTGGCACGATTTCCACCCTACCTTTAAATTAGATCCCTCCCTTCTCAATAACAAACTTATGTAG

Coding sequence (CDS)

ATGGAGAACAATGAGAAGAAACAAGGAGGAGACAACTTCTTTCAAATGCCACTTCACTATCCCAGATATTCCAAGATGGACTACGAGAACATGCCTGAATGGAAGCTCGACCGCCTTCTCCTCGAGTACGGTCTCCCAACTCATGGCAACTTGCCCTACAAACGACAATTCGCAATGGGTGCTTTCCTCTGGCACGATTTCCACCCTACCTTTAAATTAGATCCCTCCCTTCTCAATAACAAACTTATGTAG

Protein sequence

MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHDFHPTFKLDPSLLNNKLM

Homology

[Close]

BLAST of CmaCh15G001080 vs. TrEMBL
Match: W9SNS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010408 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 5  EKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLW 64
          +K + G ++FQMPLHYPRY+K DY++MPEWKLD+LL +YGLPTHG+L YKR FA+GAFLW
Sbjct: 6  KKNESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLW 65

Query: 65 HDFH------PTFKL--DPSLLNNKL 83
           DFH      P ++   D SLL+ K+
Sbjct: 66 PDFHQGSKPPPPYRTINDASLLDKKI 91

[Close]

BLAST of CmaCh15G001080 vs. TrEMBL
Match: A0A061FTQ6_THECC (Cytoplasmic tRNA 2-thiolation protein 1 OS=Theobroma cacao GN=TCM_042740 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-21
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 6  KKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWH 65
          +KQ G +FFQMPLHYPRY++ DY++MPEWKLDRLL EYGL   G+L YKRQFAMGAFLW 
Sbjct: 4  EKQNGVSFFQMPLHYPRYTQKDYQDMPEWKLDRLLAEYGLSNKGDLAYKRQFAMGAFLWP 63

Query: 66 DFH 69
          DFH
Sbjct: 64 DFH 66

[Close]

BLAST of CmaCh15G001080 vs. TrEMBL
Match: B9SE01_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1481450 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-20
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 7  KQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHD 66
          K+GG  +FQMP+HYPRY+K DYENMPEW+LDRLL +YGLP +G+L YKR+FAMG+FLW D
Sbjct: 3  KEGGACYFQMPVHYPRYTKKDYENMPEWQLDRLLADYGLPINGDLGYKREFAMGSFLWPD 62

Query: 67 FHPTFK 73
             T++
Sbjct: 63 SSATYQ 68

[Close]

BLAST of CmaCh15G001080 vs. TrEMBL
Match: A0A151U034_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_005233 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-20
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60
          ME+ +K   G  FFQMPLHYPRY++ DY++MPEWKLDRLL EYGLPTHG+L YKR+FAMG
Sbjct: 1  MESLQKNSVG--FFQMPLHYPRYTQKDYQHMPEWKLDRLLKEYGLPTHGDLTYKREFAMG 60

Query: 61 AFLW 65
          AFLW
Sbjct: 61 AFLW 62

[Close]

BLAST of CmaCh15G001080 vs. TrEMBL
Match: K7KAM8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G250500 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-20
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 6  KKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLW 65
          +K     FFQMPLHYPRY++ DY++MPEWKLDRLL EYGLPTHG+L YKR+FAMGAFLW
Sbjct: 5  QKNNSVGFFQMPLHYPRYTQKDYQDMPEWKLDRLLKEYGLPTHGDLAYKREFAMGAFLW 63

[Close]

BLAST of CmaCh15G001080 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 1   MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60
           M+    K G  + F+MPLHYPRYSK DY++MPEWKLDR+L +YGL T+G+L +KR FA+G
Sbjct: 19  MDVENGKNGEGSVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIG 78

Query: 61  AFLWHDFHPTFKLDPSLLNNKL 83
           AFLW             +N+KL
Sbjct: 79  AFLWISTRNPKLYQEKSINSKL 100

[Close]

BLAST of CmaCh15G001080 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 8.9e-19
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 3  NNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAF 62
          N++K Q   + FQ+PLHYP+Y+K DYE MPEW+LDRLL EYGLP  G+   KR+FA+GAF
Sbjct: 34 NHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAF 93

Query: 63 LW 65
          LW
Sbjct: 94 LW 95

[Close]

BLAST of CmaCh15G001080 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 14  FQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTH-GNLPYKRQFAMGAFLW 65
           FQMPL YP Y+K  Y+ M E +LDRLL  YGLPT  GNL  K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

[Close]

BLAST of CmaCh15G001080 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-12
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYG-LPTHGN-LPYKRQFA 60
          ++ N   +   + F+MPLHYPRY+K DYE M EW+LD LL EYG L  H N L  KR FA
Sbjct: 23 LDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFA 82

Query: 61 MGAFLWHDFHP 70
          +  F+W   HP
Sbjct: 83 IDTFIW-PHHP 92

[Close]

BLAST of CmaCh15G001080 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 4.7e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 6  KKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWH 65
          KK+   + FQ+PLHYP+YSK DYE M + +LD LL +YG    G+L  KR FA+ +FLW 
Sbjct: 39 KKEEFPSGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWP 98

Query: 66 D 67
          D
Sbjct: 99 D 99

[Close]

BLAST of CmaCh15G001080 vs. NCBI nr
Match: gi|703144910|ref|XP_010108400.1| (hypothetical protein L484_010408 [Morus notabilis])

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-22
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 5  EKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLW 64
          +K + G ++FQMPLHYPRY+K DY++MPEWKLD+LL +YGLPTHG+L YKR FA+GAFLW
Sbjct: 6  KKNESGVSYFQMPLHYPRYTKQDYQDMPEWKLDQLLAQYGLPTHGDLAYKRDFAIGAFLW 65

Query: 65 HDFH------PTFKL--DPSLLNNKL 83
           DFH      P ++   D SLL+ K+
Sbjct: 66 PDFHQGSKPPPPYRTINDASLLDKKI 91

[Close]

BLAST of CmaCh15G001080 vs. NCBI nr
Match: gi|590563159|ref|XP_007009289.1| (Cytoplasmic tRNA 2-thiolation protein 1 [Theobroma cacao])

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-21
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 6  KKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWH 65
          +KQ G +FFQMPLHYPRY++ DY++MPEWKLDRLL EYGL   G+L YKRQFAMGAFLW 
Sbjct: 4  EKQNGVSFFQMPLHYPRYTQKDYQDMPEWKLDRLLAEYGLSNKGDLAYKRQFAMGAFLWP 63

Query: 66 DFH 69
          DFH
Sbjct: 64 DFH 66

[Close]

BLAST of CmaCh15G001080 vs. NCBI nr
Match: gi|223536497|gb|EEF38144.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-20
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 7  KQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLWHD 66
          K+GG  +FQMP+HYPRY+K DYENMPEW+LDRLL +YGLP +G+L YKR+FAMG+FLW D
Sbjct: 3  KEGGACYFQMPVHYPRYTKKDYENMPEWQLDRLLADYGLPINGDLGYKREFAMGSFLWPD 62

Query: 67 FHPTFK 73
             T++
Sbjct: 63 SSATYQ 68

[Close]

BLAST of CmaCh15G001080 vs. NCBI nr
Match: gi|1012361452|gb|KYP72635.1| (hypothetical protein KK1_005233 [Cajanus cajan])

HSP 1 Score: 104.8 bits (260), Expect = 7.6e-20
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 1  MENNEKKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMG 60
          ME+ +K   G  FFQMPLHYPRY++ DY++MPEWKLDRLL EYGLPTHG+L YKR+FAMG
Sbjct: 1  MESLQKNSVG--FFQMPLHYPRYTQKDYQHMPEWKLDRLLKEYGLPTHGDLTYKREFAMG 60

Query: 61 AFLW 65
          AFLW
Sbjct: 61 AFLW 62

[Close]

BLAST of CmaCh15G001080 vs. NCBI nr
Match: gi|947124864|gb|KRH73070.1| (hypothetical protein GLYMA_02G250500 [Glycine max])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 6  KKQGGDNFFQMPLHYPRYSKMDYENMPEWKLDRLLLEYGLPTHGNLPYKRQFAMGAFLW 65
          +K     FFQMPLHYPRY++ DY++MPEWKLDRLL EYGLPTHG+L YKR+FAMGAFLW
Sbjct: 5  QKNNSVGFFQMPLHYPRYTQKDYQDMPEWKLDRLLKEYGLPTHGDLAYKREFAMGAFLW 63

The following BLAST results are available for this feature:

BLAST of CmaCh15G001080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G001080 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SNS4_9ROSA	1.9e-22	59.30	Uncharacterized protein OS=Morus notabilis GN=L484_010408 PE=4 SV=1	[more]
A0A061FTQ6_THECC	3.7e-21	74.60	Cytoplasmic tRNA 2-thiolation protein 1 OS=Theobroma cacao GN=TCM_042740 PE=4 SV...	[more]
B9SE01_RICCO	4.1e-20	66.67	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1481450 PE=4 SV=1	[more]
A0A151U034_CAJCA	5.3e-20	73.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_005233 PE=4 SV=1	[more]
K7KAM8_SOYBN	9.0e-20	74.58	Uncharacterized protein OS=Glycine max GN=GLYMA_02G250500 PE=4 SV=1	[more]

BLAST of CmaCh15G001080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55570.1	4.7e-20	52.44	unknown protein	[more]
AT5G41761.1	8.9e-19	62.90	unknown protein	[more]
AT3G11405.1	2.8e-12	63.46	unknown protein	[more]
AT3G09950.1	3.6e-12	50.70	unknown protein	[more]
AT5G55620.1	4.7e-12	52.46	unknown protein	[more]

BLAST of CmaCh15G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703144910\|ref\|XP_010108400.1\|	2.8e-22	59.30	hypothetical protein L484_010408 [Morus notabilis]	[more]
gi\|590563159\|ref\|XP_007009289.1\|	5.3e-21	74.60	Cytoplasmic tRNA 2-thiolation protein 1 [Theobroma cacao]	[more]
gi\|223536497\|gb\|EEF38144.1\|	5.8e-20	66.67	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1012361452\|gb\|KYP72635.1\|	7.6e-20	73.44	hypothetical protein KK1_005233 [Cajanus cajan]	[more]
gi\|947124864\|gb\|KRH73070.1\|	1.3e-19	74.58	hypothetical protein GLYMA_02G250500 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G001080.1	CmaCh15G001080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 1..75 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G001080	Cla006548	Watermelon (97103) v1	cmawmB283
CmaCh15G001080	ClCG11G006650	Watermelon (Charleston Gray)	cmawcgB252
CmaCh15G001080	Lsi03G003560	Bottle gourd (USVL1VR-Ls)	cmalsiB276
CmaCh15G001080	Cla97C11G213620	Watermelon (97103) v2	cmawmbB296
CmaCh15G001080	Bhi04G001941	Wax gourd	cmawgoB0397
CmaCh15G001080	Carg02095	Silver-seed gourd	carcmaB0362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G001080	Silver-seed gourd	carcmaB1381
CmaCh15G001080	Cucumber (Chinese Long) v3	cmacucB0335
CmaCh15G001080	Cucumber (Chinese Long) v3	cmacucB0347
CmaCh15G001080	Cucumber (Chinese Long) v3	cmacucB0363
CmaCh15G001080	Watermelon (97103) v2	cmawmbB291
CmaCh15G001080	Cucurbita maxima (Rimu)	cmacmaB241
CmaCh15G001080	Cucurbita maxima (Rimu)	cmacmaB324
CmaCh15G001080	Cucurbita maxima (Rimu)	cmacmaB326
CmaCh15G001080	Cucurbita maxima (Rimu)	cmacmaB333
CmaCh15G001080	Cucurbita maxima (Rimu)	cmacmaB335
CmaCh15G001080	Cucumber (Gy14) v1	cgycmaB0369
CmaCh15G001080	Cucumber (Gy14) v1	cgycmaB0467
CmaCh15G001080	Cucumber (Gy14) v1	cgycmaB0498
CmaCh15G001080	Cucurbita moschata (Rifu)	cmacmoB286
CmaCh15G001080	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G001080	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G001080	Cucurbita moschata (Rifu)	cmacmoB313
CmaCh15G001080	Wild cucumber (PI 183967)	cmacpiB302
CmaCh15G001080	Wild cucumber (PI 183967)	cmacpiB291
CmaCh15G001080	Wild cucumber (PI 183967)	cmacpiB314
CmaCh15G001080	Cucumber (Chinese Long) v2	cmacuB287
CmaCh15G001080	Cucumber (Chinese Long) v2	cmacuB309
CmaCh15G001080	Melon (DHL92) v3.5.1	cmameB267
CmaCh15G001080	Melon (DHL92) v3.5.1	cmameB274
CmaCh15G001080	Watermelon (Charleston Gray)	cmawcgB247
CmaCh15G001080	Watermelon (Charleston Gray)	cmawcgB270
CmaCh15G001080	Watermelon (97103) v1	cmawmB255
CmaCh15G001080	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G001080	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G001080	Cucurbita pepo (Zucchini)	cmacpeB320
CmaCh15G001080	Cucurbita pepo (Zucchini)	cmacpeB322
CmaCh15G001080	Cucurbita pepo (Zucchini)	cmacpeB328
CmaCh15G001080	Bottle gourd (USVL1VR-Ls)	cmalsiB275
CmaCh15G001080	Cucumber (Gy14) v2	cgybcmaB329
CmaCh15G001080	Cucumber (Gy14) v2	cgybcmaB741
CmaCh15G001080	Melon (DHL92) v3.6.1	cmamedB306
CmaCh15G001080	Melon (DHL92) v3.6.1	cmamedB314
CmaCh15G001080	Silver-seed gourd	carcmaB0030
CmaCh15G001080	Silver-seed gourd	carcmaB0204
CmaCh15G001080	Silver-seed gourd	carcmaB0945