CmaCh14G019340 (gene) Cucurbita maxima (Rimu)

NameCmaCh14G019340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChaperonin 10 family protein
LocationCma_Chr14 : 13618342 .. 13620074 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGCCTCTACATTCGTCACAGTGCCAAAGCCCTTTATCAACGCGGCTAATTCACCTCCGTATCTGCACGGCGACGAGTAATCGGTACGCTGATAAGTAAATCCGTTGATAGACTGTCGCATTTTCTTTTCTCGATCAATTTCTGTCGCGCTATCCGTCTTCTGAATTTCTGGATGTTTTTTCTTCTTGATTTTTGGATAGGAGGACTGCGAAGAAGCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGGTAGTCCTCCCCTGCGATTTGAGTTTTTTTTTTTTTTCTTTCTTTTGTGTTATTGAACTCATGAACTTGATTTTTAATGCTTATTATTGACATTTTATGATGCTTTTGGATTTAAGGTGTTTCCTCAAGCTGATAGAGTATACTCGTCCGTCTTGAGCAGCGCCCTGAGGTAATCTCACGCTCAACAAAAATTGCGAATGAATTTGTAAAATTTGTAGAATTTGTTTGATGTATTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTAAGTCGTTTGGTTTGGTGGAGTCATCATATTGGCTTGAATATTCTCTCAATTATTTATGGTCCAGCTTTGCTTTTCAATTATTGGGTATCATACCACAAATGTGCTGCAATCAAGAATGCGGATGGATGTTGCTTTTTAACCATATCTTTGATTGTTAAAAGTGGAAAAAAAAAAAAAAAAAAACTTGTTCTCAGAAATCTGATCATAGGTTTAGTATGGATTATAAATTTGTTTGAATTGAGTTTGTCTATGCACCATTCCTCTTAGAATTGGATGTCGAAAAGGTCTTGGCTCAAAAAATCTGGTCATAGGGTTGGTTGGTTTACATTATAAGTCTTACATCAATCACCGTATGGGACTGTTACTAGAGATGCTTTTGTAGGAAATATGAATGGTTTGGCGATGCATCCTTGGAAGTCTTAGCTTCTAAGTTGTATCTTGCGTGTTAGCTGACCCTCTTATTCATGTCATAAAGTCTATTCATGTTCATCTTTCTGCTTTCCCTACACATTATTTTTCCTTCTGCTTCTCTCCATTTCGGATTTCGAAATGAAAGCAATGAGCTATACTCGGGGACCAAGATGCAGCCGTAGTAGCCTCTTAGTCGTACTTTAGTTAGTTCAAACTCTTACAAACTAAAGTTAGAACTTTCTTATATTTGTTGTTAATATGGCAAACAAATGCGAATGAACTATATTTGAATGAGTGTAATTATTATTTTATCTATTGAGCTATATTCAATCAACGAACACTAACACATTATTTTTTTAAGATTGATTTTGAATGTTGGTGGTGGTTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCCTCCAACACTACAATCAGATCAACATCAGATATTTTCACTCAGATTAGTTCTCTTCCCTGATTCTCATTTGCTTGTTGCTTCTGCAATATCTGATCTTTGTTTTTGTCTTTATTGCTTTGTGTGATCCGTATAAAGATATCAGTTCTTCTCATTAGGAAGAATACCTTACCTTAAATTATATTTTAAAAATTACTCAACCTTCAAAACAAAACTGAAGAAAAACAAGAATAAATGATTTTTTTTAATACTTTTTCCCCCTAGAGAATGTAAAACCCTTTTCAAATAAATGATTTTT

mRNA sequence

ATGGCGATGCCTCTACATTCGTCACAGTGCCAAAGCCCTTTATCAACGCGGCTAATTCACCTCCGTATCTGCACGGCGACGAGAGGACTGCGAAGAAGCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGAGTATACTCGTCCGTCTTGAGCAGCGCCCTGAGAATTTGTTTGATGTATTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCCTCCAACACTACAATCAGATCAACATCAGATATTTTCACTCAGATTAGTTCTCTTCCCTGATTCTCATTTGCTTGTTGCTTCTGCAATATCTGATCTTTGTTTTTGTCTTTATTGCTTTGTGTGATCCGTATAAAGATATCAGTTCTTCTCATTAGGAAGAATACCTTACCTTAAATTATATTTTAAAAATTACTCAACCTTCAAAACAAAACTGAAGAAAAACAAGAATAAATGATTTTTTTTAATACTTTTTCCCCCTAGAGAATGTAAAACCCTTTTCAAATAAATGATTTTT

Coding sequence (CDS)

ATGGCGATGCCTCTACATTCGTCACAGTGCCAAAGCCCTTTATCAACGCGGCTAATTCACCTCCGTATCTGCACGGCGACGAGAGGACTGCGAAGAAGCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGAGTATACTCGTCCGTCTTGAGCAGCGCCCTGAGAATTTGTTTGATGTATTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAG

Protein sequence

MAMPLHSSQCQSPLSTRLIHLRICTATRGLRRSAFKVRAVSKKREPAKSILVRLEQRPENLFDVLLSITFRVIISDINACQVDLGTDSKHCFCKAGDLLAVVE
BLAST of CmaCh14G019340 vs. TrEMBL
Match: A0A0A0L6L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128890 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 52/111 (46.85%), Postives = 63/111 (56.76%), Query Frame = 1

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFD 86
           T GLR S  KV A+SKK EPAK       +LVRLE+ PE                  L  
Sbjct: 31  TGGLRSSNLKVSAISKKWEPAKVVPQADRVLVRLEELPEKSVGGVLLPKSAVKFERYLVG 90

Query: 87  VLLSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           V+LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLA+VE
Sbjct: 91  VILSVGTEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAIVE 141

BLAST of CmaCh14G019340 vs. TrEMBL
Match: A9P8A5_POPTR (Chaperonin 10 family protein OS=Populus trichocarpa GN=POPTR_0014s04380g PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GL+R++ ++ A+SKK EP K       +L+RLE  PE                  L   +
Sbjct: 32  GLKRNSLRINAISKKWEPTKVVPQADRVLIRLEDLPEKSSGGVLLPKSAVKFERYLMGEV 91

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA ++DLGTD+KHCFCKAGDLLAVVE
Sbjct: 92  LSVGAEVGEVEAGKKVLFSDINAYEIDLGTDAKHCFCKAGDLLAVVE 138

BLAST of CmaCh14G019340 vs. TrEMBL
Match: B9SKH0_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_0658800 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-10
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           G RR++ ++ A++KK +P K       +L+RL++ PE                  L   +
Sbjct: 31  GFRRNSLRINAIAKKWDPTKVVPQADRVLIRLDELPEKSSGGVLLPKSAVKFERYLMGEI 90

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA +VDLGTD+KHCFCKAGDLLAVVE
Sbjct: 91  LSVGTEVGEVEAGKKVLFSDINAYEVDLGTDAKHCFCKAGDLLAVVE 137

BLAST of CmaCh14G019340 vs. TrEMBL
Match: A0A103XUM2_CYNCS (Chaperonin Cpn10 OS=Cynara cardunculus var. scolymus GN=Ccrd_000672 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-09
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFD 86
           T GLRR++FKV A++ K EP K       +L+RLE+ P+                  L  
Sbjct: 31  TLGLRRNSFKVNAIAAKYEPTKVKPQADRVLIRLEELPQKSAGGVLLPKSAVKFERYLMG 90

Query: 87  VLLSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
            +L++           +V+ SDINA +VDLG + +HCFCKA DLLAVVE
Sbjct: 91  EILAVGSEAGELEAGKKVLFSDINAYEVDLGAEGRHCFCKAADLLAVVE 139

BLAST of CmaCh14G019340 vs. TrEMBL
Match: W9QU16_9ROSA (10 kDa chaperonin OS=Morus notabilis GN=L484_008030 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-09
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           G+++++ +V A+SKK EP K       +LVRLEQ PE                  L   +
Sbjct: 30  GMQQNSLRVCAISKKWEPTKVVPQADRVLVRLEQLPEKSAGGVLLPKSAVKFERYLTGEI 89

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA +VDLGTD+KHCFCK  DLLAVVE
Sbjct: 90  LSVGADVGGVKAGTKVLFSDINAYEVDLGTDTKHCFCKESDLLAVVE 136

BLAST of CmaCh14G019340 vs. TAIR10
Match: AT2G44650.1 (AT2G44650.1 chloroplast chaperonin 10)

HSP 1 Score: 60.1 bits (144), Expect = 9.4e-10
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRP-ENLFDVLL---SITF-------- 88
           G RR   +++A+S K EP K       +LVRLE  P ++   VLL   ++ F        
Sbjct: 32  GSRRGCLRIKAISTKWEPTKVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEI 91

Query: 89  ---------------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
                          RV+ SD++A +VDLGTD++HCFCK  DLLA+VE
Sbjct: 92  ISVGSEVGQQVGPGKRVLFSDVSAYEVDLGTDARHCFCKESDLLALVE 139

BLAST of CmaCh14G019340 vs. TAIR10
Match: AT3G60210.1 (AT3G60210.1 GroES-like family protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.4e-10
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPENLFDVLL----SITF-------- 88
           G+RR++F++ AVS K EPAK       +LVRLE  PE     +L    ++ F        
Sbjct: 31  GIRRNSFRINAVSTKWEPAKVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEV 90

Query: 89  --------------RVIISDINACQVDLGT-DSKHCFCKAGDLLAVVE 104
                         +V+ SD++A +VD GT D+KHCFCK  DLLA+V+
Sbjct: 91  VSVGSEVGEVEPGKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138

BLAST of CmaCh14G019340 vs. NCBI nr
Match: gi|449432354|ref|XP_004133964.1| (PREDICTED: 20 kDa chaperonin, chloroplastic [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 52/111 (46.85%), Postives = 63/111 (56.76%), Query Frame = 1

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFD 86
           T GLR S  KV A+SKK EPAK       +LVRLE+ PE                  L  
Sbjct: 31  TGGLRSSNLKVSAISKKWEPAKVVPQADRVLVRLEELPEKSVGGVLLPKSAVKFERYLVG 90

Query: 87  VLLSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           V+LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLA+VE
Sbjct: 91  VILSVGTEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAIVE 141

BLAST of CmaCh14G019340 vs. NCBI nr
Match: gi|659075686|ref|XP_008438275.1| (PREDICTED: 20 kDa chaperonin, chloroplastic [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GLR S  KV A+S+K EPAK       +LVRLE+ PE                  L   +
Sbjct: 33  GLRSSTLKVSAISRKWEPAKVVPQADRVLVRLEELPEKSAGGVLLPKSAVKFERYLVGEI 92

Query: 89  LSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLAVVE
Sbjct: 93  LSVGAEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAVVE 141

BLAST of CmaCh14G019340 vs. NCBI nr
Match: gi|743787748|ref|XP_011031730.1| (PREDICTED: 20 kDa chaperonin, chloroplastic-like [Populus euphratica])

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GL+R++ ++ A+SKK EP K       +L+RLE  PE                  L   +
Sbjct: 32  GLKRNSLRINAISKKWEPTKVVPQADRVLIRLEDLPEKSSGGVLLPKSAVKFERYLMGEV 91

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA ++DLGTD+KHCFCKAGDLLAVVE
Sbjct: 92  LSVGAEVGEVEAGKKVLFSDINAYEIDLGTDAKHCFCKAGDLLAVVE 138

BLAST of CmaCh14G019340 vs. NCBI nr
Match: gi|566202457|ref|XP_006375101.1| (chaperonin 10 family protein [Populus trichocarpa])

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GL+R++ ++ A+SKK EP K       +L+RLE  PE                  L   +
Sbjct: 32  GLKRNSLRINAISKKWEPTKVVPQADRVLIRLEDLPEKSSGGVLLPKSAVKFERYLMGEV 91

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA ++DLGTD+KHCFCKAGDLLAVVE
Sbjct: 92  LSVGAEVGEVEAGKKVLFSDINAYEIDLGTDAKHCFCKAGDLLAVVE 138

BLAST of CmaCh14G019340 vs. NCBI nr
Match: gi|255571099|ref|XP_002526500.1| (PREDICTED: 10 kDa chaperonin [Ricinus communis])

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-10
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           G RR++ ++ A++KK +P K       +L+RL++ PE                  L   +
Sbjct: 31  GFRRNSLRINAIAKKWDPTKVVPQADRVLIRLDELPEKSSGGVLLPKSAVKFERYLMGEI 90

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA +VDLGTD+KHCFCKAGDLLAVVE
Sbjct: 91  LSVGTEVGEVEAGKKVLFSDINAYEVDLGTDAKHCFCKAGDLLAVVE 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6L9_CUCSA2.3e-1246.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128890 PE=4 SV=1[more]
A9P8A5_POPTR1.2e-1042.06Chaperonin 10 family protein OS=Populus trichocarpa GN=POPTR_0014s04380g PE=2 SV... [more]
B9SKH0_RICCO6.2e-1040.19ATP binding protein, putative OS=Ricinus communis GN=RCOM_0658800 PE=4 SV=1[more]
A0A103XUM2_CYNCS5.2e-0939.45Chaperonin Cpn10 OS=Cynara cardunculus var. scolymus GN=Ccrd_000672 PE=3 SV=1[more]
W9QU16_9ROSA5.2e-0942.0610 kDa chaperonin OS=Morus notabilis GN=L484_008030 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44650.19.4e-1037.96 chloroplast chaperonin 10[more]
AT3G60210.19.4e-1037.96 GroES-like family protein[more]
Match NameE-valueIdentityDescription
gi|449432354|ref|XP_004133964.1|3.3e-1246.85PREDICTED: 20 kDa chaperonin, chloroplastic [Cucumis sativus][more]
gi|659075686|ref|XP_008438275.1|2.8e-1145.87PREDICTED: 20 kDa chaperonin, chloroplastic [Cucumis melo][more]
gi|743787748|ref|XP_011031730.1|1.8e-1042.06PREDICTED: 20 kDa chaperonin, chloroplastic-like [Populus euphratica][more]
gi|566202457|ref|XP_006375101.1|1.8e-1042.06chaperonin 10 family protein [Populus trichocarpa][more]
gi|255571099|ref|XP_002526500.1|8.9e-1040.19PREDICTED: 10 kDa chaperonin [Ricinus communis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006457 protein folding
biological_process GO:0051085 chaperone mediated protein folding requiring cofactor
biological_process GO:0006986 response to unfolded protein
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009507 chloroplast
cellular_component GO:0005759 mitochondrial matrix
molecular_function GO:0003674 molecular_function
molecular_function GO:0051087 chaperone binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051082 unfolded protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G019340.1CmaCh14G019340.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh14G019340CmaCh06G011760Cucurbita maxima (Rimu)cmacmaB285