CmaCh14G018680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G018680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Gag-pol polyprotein
Location	Cma_Chr14 : 13245485 .. 13247218 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATAGCTATGGAAAAGTTGGTTGGCAATAACTATAGTTATTTGAAGTTATGCATGGAAGCTTATCTACCAGGGCAAGATTTGTGGGATTTAATTGAAGGTGATGACATAGAAATTCCAGCCGATACTCCACAGAATGCAGAATTACGCCGACAATGGAAGATCAAATGTGGAAAAGCCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCATTAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGATAACTCAAGGCAATTTTTCTGTTGAAGAATATTTTTTGAAAGTGAAGAATTTGTGTTCTCAAATTTCAGAATTAGATGCTGAGGAGCCAGTGAGTGATGCTCGATTACGGCGTTATCTTATTCGTGGATTACGGAAAGAGTTTATGCCATTTGTTTCCTCAATACAAGGGTGGACAAATCAACCTACAGTAATTGAACTGGAGAATCTTCTTTCCAATCAGGAAGCCTTGATTAACCAAATGACTAGCAGCAACGAGTTTTCCCGAAAGTCAAAAGATGTGTTGTACGTCAAAGATCAAAGGAGACAAAATTTTCATTCAAAGCCTTCATCTAGCAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAATAAGTCATTTAAAGCTTGTTACAGGTGTGGAAAACCAGGCCATTTTAAACGAGATTGTCAGGTGAAAGTGGTGTGTGATCGTTGTGGAAAGCCAGACCATATTAAGCCAAATTGCCGAGTCAAAATCGAGGAATTAGAAGCAAATGCGGTACATGAAAGTAAAAATTCTTCAGATCCAATTTGGGAATACTGCTTAATCACTGAGGTTCTTGATCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTCTCTACAGGTGATCAAAATTCTAATTCCACTACTTACACTTCTGAATTTGATTCTCTCCAAATTTCGCCTCTGGACTCTCTTTTTTTCCAATGCCAATTTTGTTGCTCCTGATGACCCTTCTATTTATTTCACGGCTTTGGATTTGGGATTCGACGAAAATGAAGTACTAACCTTTGACGATCTTGACAGTCTTTACCTCCCCTCTGAGGATAATAATTTCCTCATCAGGGAGAATTTGGATCAAACTACCAATTTGCAGAATTCGGCTACTGATGCTCAGCCCCAGCCTAACCCAGAAATAGCGGCACGGCTTGATGATGATGATTTACCACAATTTGTTTTGATGTTGAGGACTTGAAGGAAGATTTTGTAGTTCAGACAAATTTATGTGAAGAAGGGGAGGATGGTTCAATGGATAATAAGTTTAGTGTGACTAAGAATTCTGAGAAGGCGACAGGAAGCTAGAATATTGTTAATAACAAATCTTTTGGCGACGACATTTTTGAGGATGCAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACGAACTCGGCGGCTTTTGGATGATCTATTTGACACCCTCTTAAGTCAGGACTATGCATCTAGTGACAATGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTACCTTCCTCAGAAGCTCAAGCACCCTTGGTGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTCCTGCGTAGATATTGAGTGGTAAAAAAGA

mRNA sequence

ATGAGTATAGCTATGGAAAAGTTGGTTGGCAATAACTATAGTTATTTGAAGTTATGCATGGAAGCTTATCTACCAGGGCAAGATTTGTGGGATTTAATTGAAGGTGATGACATAGAAATTCCAGCCGATACTCCACAGAATGCAGAATTACGCCGACAATGGAAGATCAAATGTGGAAAAGCCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCATTAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGATAACTCAAGGCAATTTTTCTGTTGAAGAATATTTTTTGAAAGTGAAGAATTTGTGTTCTCAAATTTCAGAATTAGATGCTGAGGAGCCAGTGAGTGATGCTCGATTACGGCGTTATCTTATTCGTGGATTACGGAAAGAGTTTATGCCATTTGTTTCCTCAATACAAGGGTGGACAAATCAACCTACAGTAATTGAACTGGAGAATCTTCTTTCCAATCAGGAAGCCTTGATTAACCAAATGACTAGCAGCAACGAGTTTTCCCGAAAGTCAAAAGATGTGTTGTACGTCAAAGATCAAAGGAGACAAAATTTTCATTCAAAGCCTTCATCTAGCAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAATAAGTCATTTAAAGCTTGTTACAGGTGTGGAAAACCAGGCCATTTTAAACGAGATTGTCAGGTGAAAGTGGTGTGTGATCGTTGTGGAAAGCCAGACCATATTAAGCCAAATTGCCGAGTCAAAATCGAGGAATTAGAAGCAAATGCGGTACATGAAAGTAAAAATTCTTCAGATCCAATTTGGGAATACTGCTTAATCACTGAGGTTCTTGATCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTCTCTACAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACGAACTCGGCGGCTTTTGGATGATCTATTTGACACCCTCTTAAGTCAGGACTATGCATCTAGTGACAATGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTACCTTCCTCAGAAGCTCAAGCACCCTTGA

Coding sequence (CDS)

ATGAGTATAGCTATGGAAAAGTTGGTTGGCAATAACTATAGTTATTTGAAGTTATGCATGGAAGCTTATCTACCAGGGCAAGATTTGTGGGATTTAATTGAAGGTGATGACATAGAAATTCCAGCCGATACTCCACAGAATGCAGAATTACGCCGACAATGGAAGATCAAATGTGGAAAAGCCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCATTAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGATAACTCAAGGCAATTTTTCTGTTGAAGAATATTTTTTGAAAGTGAAGAATTTGTGTTCTCAAATTTCAGAATTAGATGCTGAGGAGCCAGTGAGTGATGCTCGATTACGGCGTTATCTTATTCGTGGATTACGGAAAGAGTTTATGCCATTTGTTTCCTCAATACAAGGGTGGACAAATCAACCTACAGTAATTGAACTGGAGAATCTTCTTTCCAATCAGGAAGCCTTGATTAACCAAATGACTAGCAGCAACGAGTTTTCCCGAAAGTCAAAAGATGTGTTGTACGTCAAAGATCAAAGGAGACAAAATTTTCATTCAAAGCCTTCATCTAGCAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAATAAGTCATTTAAAGCTTGTTACAGGTGTGGAAAACCAGGCCATTTTAAACGAGATTGTCAGGTGAAAGTGGTGTGTGATCGTTGTGGAAAGCCAGACCATATTAAGCCAAATTGCCGAGTCAAAATCGAGGAATTAGAAGCAAATGCGGTACATGAAAGTAAAAATTCTTCAGATCCAATTTGGGAATACTGCTTAATCACTGAGGTTCTTGATCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTCTCTACAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACGAACTCGGCGGCTTTTGGATGATCTATTTGACACCCTCTTAAGTCAGGACTATGCATCTAGTGACAATGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGATGAGTACCTTCCTCAGAAGCTCAAGCACCCTTGA

Protein sequence

MSIAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKALFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEEYFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENLLSNQEALINQMTSSNEFSRKSKDVLYVKDQRRQNFHSKPSSSNGNQFRSEESSNKSFKACYRCGKPGHFKRDCQVKVVCDRCGKPDHIKPNCRVKIEELEANAVHESKNSSDPIWEYCLITEVLDQPTNVTSAVYQDDVSTDVDHVEDDVDKPRTRRLLDDLFDTLLSQDYASSDNGDSACDEHDGWVAEEDEYLPQKLKHP

Homology

[Close]

BLAST of CmaCh14G018680 vs. TrEMBL
Match: I1J3P8_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.9e-60
Identity = 143/390 (36.67%), Postives = 212/390 (54.36%), Query Frame = 1


Query: 2   SIAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKA 61
           S  + KL  +NY Y + CME+YL GQDLW+++ G +    A  P+NA+  R+WKIK GKA
Sbjct: 8   SSGIRKLNSHNYGYWQTCMESYLQGQDLWEVVAGTE----AFPPENADALRKWKIKSGKA 67

Query: 62  LFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEE 121
           +F L+T I ++ ++H+RD K+PK+ W+TL KLF +KN ARLQ LENELA I+QGN S+ +
Sbjct: 68  MFVLKTTIEEDLLEHIRDEKTPKEAWETLAKLFSRKNEARLQLLENELAGISQGNLSISQ 127

Query: 122 YFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENL 181
           YF KVK +C +IS+L  +E VS+ R++R +I GLR E+  F++++ GW   P+V+ELENL
Sbjct: 128 YFSKVKFICREISQLAPDEKVSETRMKRIIIHGLRPEYNGFMAAVMGWPTPPSVVELENL 187

Query: 182 LSNQEALINQMTSSNEFSRKSKDVLYVKDQ--RRQNFHSKPSSSNGNQFRSEESSNKS-- 241
           L NQE L  +M S     ++ ++ L+ K +   ++ +  KP  + G +   +E SN S  
Sbjct: 188 LVNQEELAKKMGSIT--IKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGG 247

Query: 242 ------------------FKACYRCGKPGHFKRDCQV----KVVCDRCGKPDHIKPNCRV 301
                                C+ CGK GHF R+C+        C  CGK  H+   CR 
Sbjct: 248 DQRERQGPKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDGCSNCGKKGHLTRECRY 307

Query: 302 KIEELEANAVHESKNSSDPIWEYCLITEVLDQPTNVTSAVYQDDVSTDVDHVEDDVDKPR 361
                E N V  +K   +   E  +  E  D       A Y  +V  D++ +E+D++ P 
Sbjct: 308 PRRRYEGN-VATTKEKEEITLEASMSEEEWD-----AEAGYSQEV--DIEDLEEDMEAPA 367

Query: 362 TRRLLDDLFDTLLSQDYASSDNGDSACDEH 366
              + D         +Y      DS C  H
Sbjct: 368 LAAIKDPKI------NYKDDWIVDSGCSNH 377

[Close]

BLAST of CmaCh14G018680 vs. TrEMBL
Match: I1IHF9_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.4e-60
Identity = 145/408 (35.54%), Postives = 224/408 (54.90%), Query Frame = 1


Query: 2   SIAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKA 61
           S  + KL  +NY Y + CME+YL GQDLW+++ G +    A  P+NA+  R+WKIK GKA
Sbjct: 8   SSGIRKLNSHNYGYWQTCMESYLQGQDLWEVVAGTE----AFPPENADALRKWKIKSGKA 67

Query: 62  LFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEE 121
           +F L+T I ++ ++H+RD K+PK+ W+TL KLF +KN ARLQ LENELA I+QGN S+ +
Sbjct: 68  MFVLKTTIEEDLLEHIRDEKTPKEAWETLAKLFSRKNEARLQLLENELAGISQGNLSISQ 127

Query: 122 YFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENL 181
           YF KVK +C +IS+L  +E VS+ R++R +I GLR E+  F++++ GW   P+V+ELENL
Sbjct: 128 YFSKVKFICREISQLAPDEKVSETRMKRIIIHGLRPEYNGFMAAVMGWPTPPSVVELENL 187

Query: 182 LSNQEALINQMTSSNEFSRKSKDVLYVKDQ--RRQNFHSKPSSSNGNQFRSEESSNKS-- 241
           L NQE L  +M S     ++ ++ L+ K +   ++ +  KP  + G +   +E SN S  
Sbjct: 188 LVNQEELAKKMESIT--IKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGG 247

Query: 242 ------------------FKACYRCGKPGHFKRDCQV----KVVCDRCGKPDHIKPNCRV 301
                                C+ CGK GHF R+C+        C  CGK  H+   CR 
Sbjct: 248 DQRERQGPKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDGCSNCGKKGHLTRECRY 307

Query: 302 KIEELEANAVHESKNSSDPIWEYCLITEVLDQPTNVTSAVYQDDVSTDVDHVEDDVDKPR 361
                E N V  +K   +   E  +  E  D       A Y  +V  D++ +E+D++ P 
Sbjct: 308 PRRRYEGN-VATTKEKEEITLEASMSEEEWD-----AEAGYSQEV--DIEDLEEDMEVPA 367

Query: 362 TRRLLDDLFDTLLSQDYASSDNGDSACDEHDGWVAEEDEYLPQKLKHP 384
                ++L + + +  +A  D  +   D      A ++E L + ++ P
Sbjct: 368 LAMDEEELEEDMEAPAFA-MDEEELEEDMKPPVFATDEEELEEDMEAP 400

[Close]

BLAST of CmaCh14G018680 vs. TrEMBL
Match: I1H466_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 137/359 (38.16%), Postives = 204/359 (56.82%), Query Frame = 1


Query: 2   SIAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKA 61
           S  + KL  +NY Y + CME+YL GQDLW+++ G +    A  P+NA+  R+WKIK GKA
Sbjct: 8   SSGIRKLNSHNYGYWQTCMESYLQGQDLWEVVAGTE----AFPPENADALRKWKIKSGKA 67

Query: 62  LFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEE 121
           +F L+T I ++ ++H+RD K+PK+ W+TL KLF +KN ARLQ LENELA I+QGN S+ +
Sbjct: 68  MFVLKTTIEEDLLEHIRDEKTPKEAWETLAKLFSRKNEARLQLLENELAGISQGNLSISQ 127

Query: 122 YFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENL 181
           YF KVK +C +IS+L  +E VS+AR++R +I GLR E+  F++++ GW   P+V+ELENL
Sbjct: 128 YFSKVKFICREISQLAPDEKVSEARMKRIIIHGLRPEYNGFMAAVMGWPTPPSVVELENL 187

Query: 182 LSNQEALINQMTSSNEFSRKSKDVLYVKDQ--RRQNFHSKPSSSNGNQFRSEESSNKS-- 241
           L NQE L  +M S     ++ ++ L+ K +   ++ +  KP  + G +   +E SN S  
Sbjct: 188 LVNQEELAKKMGSIT--IKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGG 247

Query: 242 ------------------FKACYRCGKPGHFKRDCQV----KVVCDRCGKPDHIKPNCRV 301
                                C+ CGK GHF R+C+        C  C K  H+   CR 
Sbjct: 248 DQRERQGPKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDGCSNCDKKGHLTRECRY 307

Query: 302 KIEELEANAVHESKNSSDPIWEYCLITEVLDQPTNVTSAVYQDDVSTDVDHVEDDVDKP 335
                E N V  +K   +   E  +  E  D       A Y  +V  D++ +E+D++ P
Sbjct: 308 PRRRYEGN-VATTKEKEEITLEVSMSEEEWD-----AEAGYSQEV--DIEDLEEDMEVP 352

[Close]

BLAST of CmaCh14G018680 vs. TrEMBL
Match: I1IDK1_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.4e-59
Identity = 136/359 (37.88%), Postives = 204/359 (56.82%), Query Frame = 1


Query: 2   SIAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKA 61
           S  + KL  +NY Y + CME+YL GQDLW+++ G +    A  P+NA+  R+WKIK GKA
Sbjct: 8   SSGIRKLNSHNYGYWQTCMESYLQGQDLWEVVAGTE----AFPPENADALRKWKIKSGKA 67

Query: 62  LFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEE 121
           +F L+T I ++ ++H+RD K+PK+ W+TL KLF +KN ARLQ LENELA I+QGN S+ +
Sbjct: 68  MFVLKTTIEEDLLEHIRDEKTPKEAWETLAKLFSRKNEARLQLLENELAGISQGNLSISQ 127

Query: 122 YFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENL 181
           YF KVK +C +IS+L  +E VS+ R++R +I GLR E+  F++++ GW   P+V+ELENL
Sbjct: 128 YFSKVKFICREISQLAPDEKVSETRMKRIIIHGLRPEYNGFMAAVMGWPTPPSVVELENL 187

Query: 182 LSNQEALINQMTSSNEFSRKSKDVLYVKDQ--RRQNFHSKPSSSNGNQFRSEESSNKSFK 241
           L NQE L  +M S     ++ ++ L+ K +   ++ +  KP  + G +   +E SN S +
Sbjct: 188 LVNQEQLAKKMGSIT--IKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGR 247

Query: 242 --------------------ACYRCGKPGHFKRDCQV----KVVCDRCGKPDHIKPNCRV 301
                                C+ CGK GHF R+C+        C  C K  H+   CR 
Sbjct: 248 DQRERQGPKWYEKNARRPSDGCFNCGKAGHFVRECRFPRRSNDGCSNCDKKGHLTRECRY 307

Query: 302 KIEELEANAVHESKNSSDPIWEYCLITEVLDQPTNVTSAVYQDDVSTDVDHVEDDVDKP 335
                E N V  +K   +   E  +  E  D       A Y  +V  D++ +E+D++ P
Sbjct: 308 PRRRYEGN-VATTKEKEEITLEASMSEEEWD-----AEAGYSQEV--DIEDLEEDMEAP 352

[Close]

BLAST of CmaCh14G018680 vs. TrEMBL
Match: I1IA27_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.4e-59
Identity = 141/405 (34.81%), Postives = 219/405 (54.07%), Query Frame = 1


Query: 2   SIAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKA 61
           S  + KL  +NY Y + CME+YL GQDLW+++ G +    A  P+NA+  R+WKIK GKA
Sbjct: 8   SSGIRKLNSHNYGYWQTCMESYLQGQDLWEVVAGTE----AFPPENADALRKWKIKSGKA 67

Query: 62  LFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEE 121
           +F L+T I ++ ++H+RD K+PK+ W+TL KLF +KN ARLQ LENEL  I+QGN S+ +
Sbjct: 68  MFVLKTTIGEDLLEHIRDEKTPKEAWETLAKLFSRKNEARLQLLENELVGISQGNLSISQ 127

Query: 122 YFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENL 181
           YF KVK +C +IS+L  +E VS+ R++R +I GLR E+  F++++ GW   P+V+ELENL
Sbjct: 128 YFSKVKFICREISQLAPDEKVSETRMKRIIIHGLRPEYNGFMAAVMGWPTPPSVVELENL 187

Query: 182 LSNQEALINQMTSSNEFSRKSKDVLYVKDQ--RRQNFHSKPSSSNGNQFRSEESSNKS-- 241
           L NQE L  +M S     ++ ++ L+ K +   ++ +  KP  + G +   +E SN S  
Sbjct: 188 LVNQEELAKKMGSIT--IKEEEEALFTKKKSPHQKQWKPKPKWTEGGKEHPKERSNSSGG 247

Query: 242 ------------------FKACYRCGKPGHFKRDCQV----KVVCDRCGKPDHIKPNCRV 301
                                C+ CGK GHF R+C+        C  CGK  H+   CR 
Sbjct: 248 DQRERQGPKWYEKNARRPSDGCFNCGKAGHFARECRFPRRSNDGCSNCGKKGHLTRECRY 307

Query: 302 KIEELEANAVHESKNSSDPIWEYCLITEVLDQPTNVTSAVYQDDVSTDV---------DH 361
                E N V  +K   +   E  +  E  D     +  V  +D+  D+         + 
Sbjct: 308 PRRRYEGN-VATTKEKEEITLEASMSEEEWDAEAGYSQEVDIEDLEEDMEAPAFAMDEEE 367

Query: 362 VEDDVDKPRTRRLLDDLFDTLLSQDYASSDNGDSACDEHDGWVAE 372
           +E+D++ P   R  ++L + + +   A+    D   +  D W+ +
Sbjct: 368 LEEDMEPPVFARDEEELEEDMEAPALAAIK--DPKINYKDDWIVD 403

[Close]

BLAST of CmaCh14G018680 vs. TAIR10
Match: AT5G48050.1 (AT5G48050.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-07
Identity = 45/182 (24.73%), Postives = 92/182 (50.55%), Query Frame = 1


Query: 52  RQWKIKCGKALFTLRTLISKEYIDHVRDLK-SPKQVWDTLQKLFIKKNTARLQFLENELA 111
           ++WK + G     +   I+   +D +  +  + + +W +L+ LF     AR    ENEL 
Sbjct: 65  KRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELR 124

Query: 112 MITQGNFSVEEYFLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWT 171
             T  + SV EY  K+K+L   ++ +D+  P+SD  L  +L+ GL +++   ++ I+  +
Sbjct: 125 TTTIDDLSVHEYCQKLKSLSDLLTNVDS--PISDRVLVMHLLNGLTEKYDYILNVIKHKS 184

Query: 172 NQPTVIELENLLSNQEA-LINQMTSSNEFSR--KSKDVLYVKDQRRQNFHSKPSSSNGNQ 230
             P+  E  ++L  +E+ L N+  SS   +      +VL+   ++++ +  +  ++N N 
Sbjct: 185 PFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNM 244

[Close]

BLAST of CmaCh14G018680 vs. NCBI nr
Match: gi|971551376|ref|XP_015164455.1| (PREDICTED: uncharacterized protein LOC107060739 [Solanum tuberosum])

HSP 1 Score: 218.0 bits (554), Expect = 2.8e-53
Identity = 134/339 (39.53%), Postives = 187/339 (55.16%), Query Frame = 1


Query: 3   IAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKAL 62
           + +E L  +NY     CM++YL G+DLWD++ G+D   P D P+N+   ++WK    KA 
Sbjct: 10  LGIELLNQSNYKVWNTCMKSYLVGEDLWDVVNGNDTSPPTDGPKNSCAYKKWKQINAKAE 69

Query: 63  FTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEEY 122
           F L+  IS    DH+   KS  ++W TL +LF KKN ARLQ LENELA  TQ N S+ EY
Sbjct: 70  FILKRTISSGLFDHIIKCKSTHEIWRTLDRLFNKKNEARLQKLENELANTTQSNLSISEY 129

Query: 123 FLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENLL 182
            LK+KNLCS+I   ++EE +S+A++R  +IRGL+ E++PFV+SIQGW  QP++ E ENLL
Sbjct: 130 SLKIKNLCSEIGLFNSEEAISEAQMRSIVIRGLKLEYIPFVTSIQGWAQQPSLEEFENLL 189

Query: 183 SNQEALINQMTSSNEFSRKSKDVLYVKDQRRQNF------HSKPSSSNGNQFRSEESSN- 242
           S+QE L NQ+ S   F ++ ++   V ++R  N       HS+ SS   +  + EE SN 
Sbjct: 190 SSQELLANQLAS--VFVKEGEENARVANKRNFNGKTRDMPHSRSSSGLSSPGKKEEPSNY 249

Query: 243 --KSFKACYRCGKPGHFKRDCQVKVVCDRCGKPDHIKPNCRVKIEELEANAVHESKNSSD 302
             K+   CYRCG  GH KR C+              + N   K+ E E            
Sbjct: 250 YGKNTPRCYRCGNVGHIKRYCRAN------------ESNMAQKVTEEEEK---------- 309

Query: 303 PIWEYCLITE--VLDQ--PTNVTSAVYQDDVSTDVDHVE 329
             W  CL+ E   +D     N+     +D     VDHVE
Sbjct: 310 --WGMCLVAEAPAIDAMVSLNLERDWIEDSEYNAVDHVE 322

[Close]

BLAST of CmaCh14G018680 vs. NCBI nr
Match: gi|661881274|emb|CDP15021.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 216.9 bits (551), Expect = 6.3e-53
Identity = 119/304 (39.14%), Postives = 177/304 (58.22%), Query Frame = 1


Query: 3   IAMEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKAL 62
           + ME L  +NY   + CME+YL G+DLWD++ GD  +      QNAE  ++W+   GKA 
Sbjct: 10  LGMELLNQSNYKIWRSCMESYLVGEDLWDVVSGDKTKPLESIEQNAEAVKKWRSLNGKAE 69

Query: 63  FTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEEY 122
           F L+  IS    +H+   KS  ++W+TL +L+ KK+ +RLQ L+NELA  TQG  S+ ++
Sbjct: 70  FALKRSISHGLFEHIIKCKSANEIWETLDRLYNKKDVSRLQMLKNELANATQGELSISQF 129

Query: 123 FLKVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENLL 182
           F+K+KNLCS+IS LD +EP+S+ARLRR+++        PF++SIQGW  QP++ ELENLL
Sbjct: 130 FVKIKNLCSEISLLDPDEPISEARLRRHIVH------TPFITSIQGWAQQPSLEELENLL 189

Query: 183 SNQEALINQMTSSNEFSRKSKDVLYVKDQRRQNFHSKPSSSNGNQFRSEESSNKSFKACY 242
           ++QE+L  QM +  + S    +VL       +NF  K    + ++ R+E S         
Sbjct: 190 TSQESLAKQM-AGIQVSEGEGEVLLAAG---KNFKRKEKKFDSSRGRAESS--------- 249

Query: 243 RCGKPGHFKRDCQVKVVCDRCGKPDHIKPNCRVKIEELEANAVHESKNSSDPIWEYCLIT 302
                   ++D +  ++C RC KP HI  NC+V I+E    A  E  + SD  W  C + 
Sbjct: 250 --------EKDGRKPIICYRCHKPGHIMKNCKVSIQETNV-AAAEKDDQSDEDWGKCFVA 285

Query: 303 EVLD 307
           E  D
Sbjct: 310 ETKD 285

[Close]

BLAST of CmaCh14G018680 vs. NCBI nr
Match: gi|658026120|ref|XP_008348476.1| (PREDICTED: uncharacterized protein LOC103411625 [Malus domestica])

HSP 1 Score: 213.4 bits (542), Expect = 7.0e-52
Identity = 113/296 (38.18%), Postives = 175/296 (59.12%), Query Frame = 1


Query: 5   MEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKALFT 64
           ++KL   NY+    CME+YL GQDLW+++ G ++  PA    N  LR+ WKIK GKA+F 
Sbjct: 10  IKKLNNKNYNTWATCMESYLQGQDLWEVVGGGEVTQPATEDANGILRK-WKIKAGKAMFA 69

Query: 65  LRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEEYFL 124
           L+T I +E ++H+RD K+PK+ WDT   LF KKN  RLQ LENEL  + Q + ++ +YF 
Sbjct: 70  LKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENELLSMAQRDMTIAQYFH 129

Query: 125 KVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENLLSN 184
           KVK++C +ISELD   P+ + R++R +I  LR E+  FV++IQGW  QP+++E ENLL+ 
Sbjct: 130 KVKSICREISELDPTAPIGETRMKRIIIHSLRPEYRGFVAAIQGWPTQPSLVEFENLLAG 189

Query: 185 QEALINQMTSSNEFSRKSKDVLYVKDQRR--QNFHSKPSSSNGNQFRSEESSNKSFKACY 244
           QEA+  QM   +   +  ++ LY   ++   + +    S  +G++ +S +    S     
Sbjct: 190 QEAMAKQMGGVS--LKGEEEALYTSKRKSTFKRYTGNGSKKDGDKLKSHQGKGSSRPGGA 249

Query: 245 RCGKPGHFKRDCQVKVVCDRCGKPDHIKPNCRVKIEELEAN-AVHESKNSSDPIWE 298
              +    K D +    C  CGK  H+  +C  K + +E+N A   SK +S+  W+
Sbjct: 250 SKNRGNSIKFDGE----CYNCGKKGHMAKDCWTKKKPVESNTATSSSKENSENGWD 298

[Close]

BLAST of CmaCh14G018680 vs. NCBI nr
Match: gi|658001027|ref|XP_008392978.1| (PREDICTED: uncharacterized protein LOC103455160 [Malus domestica])

HSP 1 Score: 213.4 bits (542), Expect = 7.0e-52
Identity = 108/270 (40.00%), Postives = 165/270 (61.11%), Query Frame = 1


Query: 5   MEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKALFT 64
           ++KL   NY+    CME+YL GQDLW+++ G ++  P     N  LR+ WKIK GKA+F 
Sbjct: 10  IKKLNNKNYNMWATCMESYLQGQDLWEVVGGGEVTQPVAKDANGILRK-WKIKAGKAMFA 69

Query: 65  LRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEEYFL 124
           L+T I +E ++H+RD K+PK+ WDT   LF KKN  RLQ LENEL ++ Q + ++ +YF 
Sbjct: 70  LKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENELLLMVQHDMTIAQYFH 129

Query: 125 KVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENLLSN 184
           KVK++C +ISELD   P+ + R++R +I GLR E+  FV++IQGW  QP+++E ENLL+ 
Sbjct: 130 KVKSICREISELDPTAPIGETRMKRIIIHGLRLEYQGFVAAIQGWPTQPSLVEFENLLAG 189

Query: 185 QEALINQMTSSNEFSRKSKDVLYVKDQRR--QNFHSKPSSSNGNQFRSEE---------- 244
           Q+A+  Q+  ++   +  ++VLY    +   + +    S  +G++ +S +          
Sbjct: 190 QKAMAKQVGGAS--LKGEEEVLYTSKSKGTFKRYTGSGSKKDGDKVKSHQGKGGSRPGGA 249

Query: 245 ----SSNKSF-KACYRCGKPGHFKRDCQVK 258
                +NK F   CY CGK GH  +DC  K
Sbjct: 250 SKNRGNNKKFDDKCYNCGKMGHMAKDCWTK 276

[Close]

BLAST of CmaCh14G018680 vs. NCBI nr
Match: gi|658043399|ref|XP_008357335.1| (PREDICTED: uncharacterized protein LOC103421076 [Malus domestica])

HSP 1 Score: 211.5 bits (537), Expect = 2.7e-51
Identity = 107/268 (39.93%), Postives = 157/268 (58.58%), Query Frame = 1


Query: 5   MEKLVGNNYSYLKLCMEAYLPGQDLWDLIEGDDIEIPADTPQNAELRRQWKIKCGKALFT 64
           ++KL   NY+    C+E+YL GQDLW++I G ++  PA    N  LR+ WKIK GK++F 
Sbjct: 10  IKKLNNQNYNTWATCIESYLQGQDLWEVIGGSEVTQPAAEDANGVLRK-WKIKAGKSMFA 69

Query: 65  LRTLISKEYIDHVRDLKSPKQVWDTLQKLFIKKNTARLQFLENELAMITQGNFSVEEYFL 124
           L+T I +E ++H+RD K+PK+ WDT   LF K+N  +LQ LENEL  + Q +  + +YF 
Sbjct: 70  LKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKRNDTKLQLLENELLSMAQRDMMIAQYFH 129

Query: 125 KVKNLCSQISELDAEEPVSDARLRRYLIRGLRKEFMPFVSSIQGWTNQPTVIELENLLSN 184
           KVK +C +ISELD   P+ + R++R +I GLR E+  FV++IQGW  QP+++E ENLL+ 
Sbjct: 130 KVKLICRKISELDPTAPIGETRMKRIIIHGLRPEYRGFVAAIQGWPTQPSLVEFENLLAG 189

Query: 185 QEALINQM---------------TSSNEFSRKSKDVLYVKDQRRQNFHSKPSSSNGNQFR 244
           QEA+  QM                S   F R +        ++ Q+      S +G  ++
Sbjct: 190 QEAMAKQMGGVSLKSEEEALYTNKSKGTFKRYTGSESKKDGEKVQSHQGNGGSHSGGAWK 249

Query: 245 SEESSNKSFKACYRCGKPGHFKRDCQVK 258
           +  +S K    CY CGK GH  +DC  K
Sbjct: 250 NRGNSKKFSGKCYNCGKMGHMAKDCWAK 276

The following BLAST results are available for this feature:

BLAST of CmaCh14G018680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G018680 vs. TrEMBL


Match Name	E-value	Identity	Description
I1J3P8_BRADI	2.9e-60	36.67	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1IHF9_BRADI	6.4e-60	35.54	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1H466_BRADI	1.1e-59	38.16	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1IDK1_BRADI	2.4e-59	37.88	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1IA27_BRADI	2.4e-59	34.81	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]

BLAST of CmaCh14G018680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48050.1	1.5e-07	24.73	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CmaCh14G018680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|971551376\|ref\|XP_015164455.1\|	2.8e-53	39.53	PREDICTED: uncharacterized protein LOC107060739 [Solanum tuberosum]	[more]
gi\|661881274\|emb\|CDP15021.1\|	6.3e-53	39.14	unnamed protein product [Coffea canephora]	[more]
gi\|658026120\|ref\|XP_008348476.1\|	7.0e-52	38.18	PREDICTED: uncharacterized protein LOC103411625 [Malus domestica]	[more]
gi\|658001027\|ref\|XP_008392978.1\|	7.0e-52	40.00	PREDICTED: uncharacterized protein LOC103455160 [Malus domestica]	[more]
gi\|658043399\|ref\|XP_008357335.1\|	2.7e-51	39.93	PREDICTED: uncharacterized protein LOC103421076 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G018680.1	CmaCh14G018680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 235..274 score: 5.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 240..255 score: 4.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 240..256 score: 7.9E-5coord: 259..275 score: 0
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 241..254 score: 1
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 233..275 score: 3.84
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..257 score: 6.6
None	No IPR available	PANTHER	PTHR11439:SF164	SUBFAMILY NOT NAMED	coord: 2..257 score: 6.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 54..183 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G018680	Cucumber (Chinese Long) v3	cmacucB0277
CmaCh14G018680	Cucumber (Chinese Long) v3	cmacucB0287
CmaCh14G018680	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G018680	Watermelon (97103) v2	cmawmbB263
CmaCh14G018680	Watermelon (97103) v2	cmawmbB266
CmaCh14G018680	Watermelon (97103) v2	cmawmbB273
CmaCh14G018680	Wax gourd	cmawgoB0311
CmaCh14G018680	Wax gourd	cmawgoB0342
CmaCh14G018680	Wax gourd	cmawgoB0344
CmaCh14G018680	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G018680	Cucurbita maxima (Rimu)	cmacmaB259
CmaCh14G018680	Cucurbita maxima (Rimu)	cmacmaB265
CmaCh14G018680	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh14G018680	Cucurbita maxima (Rimu)	cmacmaB296
CmaCh14G018680	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G018680	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G018680	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G018680	Cucurbita moschata (Rifu)	cmacmoB261
CmaCh14G018680	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G018680	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G018680	Wild cucumber (PI 183967)	cmacpiB240
CmaCh14G018680	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G018680	Cucumber (Chinese Long) v2	cmacuB238
CmaCh14G018680	Cucumber (Chinese Long) v2	cmacuB251
CmaCh14G018680	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G018680	Melon (DHL92) v3.5.1	cmameB234
CmaCh14G018680	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G018680	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G018680	Watermelon (Charleston Gray)	cmawcgB235
CmaCh14G018680	Watermelon (Charleston Gray)	cmawcgB240
CmaCh14G018680	Watermelon (97103) v1	cmawmB242
CmaCh14G018680	Watermelon (97103) v1	cmawmB250
CmaCh14G018680	Cucurbita pepo (Zucchini)	cmacpeB259
CmaCh14G018680	Cucurbita pepo (Zucchini)	cmacpeB266
CmaCh14G018680	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G018680	Cucurbita pepo (Zucchini)	cmacpeB290
CmaCh14G018680	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G018680	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G018680	Bottle gourd (USVL1VR-Ls)	cmalsiB245
CmaCh14G018680	Bottle gourd (USVL1VR-Ls)	cmalsiB247
CmaCh14G018680	Cucumber (Gy14) v2	cgybcmaB188
CmaCh14G018680	Cucumber (Gy14) v2	cgybcmaB314
CmaCh14G018680	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G018680	Melon (DHL92) v3.6.1	cmamedB266
CmaCh14G018680	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G018680	Silver-seed gourd	carcmaB0313
CmaCh14G018680	Silver-seed gourd	carcmaB0325
CmaCh14G018680	Silver-seed gourd	carcmaB1075
CmaCh14G018680	Silver-seed gourd	carcmaB1320
CmaCh14G018680	Silver-seed gourd	carcmaB1485