CmaCh14G017980 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G017980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 12949568 .. 12951234 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATGGTTGGCATAGGAAGGGAAAGGAGTTGGGCTACGAGGGGCTTGAAGATCTGGATTATGTGGTTTAAGCGGTCACGGGCACCAGAAATGGAGCCGGCGGCAAGAGCCCAGGGGAGATCGAAGCCGTTTGAGAAGAATTTGCCATGGGAAGTTGTGATGAGAACTGAACCAGGGGTGGCTTGTGCCTTAACCTGTGAAAGGGCTTTAAGAATGGAGTTGATTAAGGATGGACCGAGGCGGTGATCGTCGTCGCCGGTCAGAGTTAGGATGAAGAAATTGCCTCGCTTCTCAAGTGTGCACATTTTCCACTGCTAAATTAATTGGCCTCCACTCTTGACTCAACTCAACTCAAAATCTTCCTCAATTTATCTTCAACTTTAATGCATGTGACAAAATATCTTTCGTCCATTCATCATCAAGAAAAAGTAGCTTTTTGCCCACAAAAAAAAAAACCCTTCAAATACTATACAAATTTGGTTCATTTTAATCTTGGTATTATCAAAATTTTGATCCCTATTAACAAAAATTACGGTGCTAAAAAGTGGTAAATAAATCTATTCACTTGATGTTAGGCAGGTAGCCCAAGCCTAATCATGTGCTTTAAATGAGTATGTCGATTAATGTTAAATGTTCAATTATATAAACTCATTGGTTTCAACTGTGCTATCAATAGACATGCTTAAGGCTATGGTGATTGCATACTAAAAAAAGAACTCAAACTTCAGGCCGAACAAATAGACACCTATAGGACCGGCAACATAGCTATTGTCACAGACGGTTGCCGGCTGTTGGCGTCCCGACAAACAATTATCCGGTCATCCCTCAATGTAAATTCTTCATCACAGCTTTCAGATTACGAGAAAACACGATGGATTTAAAATAAAGACGGCACAGGAAATTTATTACTAATCATGATATTCGCATCATAAATTAGCACAATTGCCAATTGAGATGAACAATTACTTTTTCGATTCTCAGAGCTTAGAAATCGAGAAGAACTTTTCCGGCAATCCAAGCAGCCGAGAGATCTCAGGGTAAAGACTTTTCCTGATTTCCGCGTAGGGTTCACCGTTCCAGTTTCTCTCCGCCAACTGTTCCCCGAGCCTTACGGCAGCCTTCATGACGCCGTCCGCGCCTTCGTGCGCCGATTCGACGATCCCCATCCTTACCGCCGATTCGCCTTTCACTTTCATTCCCGTCAGTAACAAATCGCGGCGGACAGAGCTCGAGCCGATCTTCGATTTAAACAGCGCCGAGAAATAATCGGGCAGAGTTAGCCCTAGATCTACTTCACTCATGTACAGAACGCCTCGATCGCTCCGCATGATCATATAATCATGGCTGAGAGCTAATAAGAAGCCGGCCGCGGCGGCGTGACCGGCGATGGCGGCGATTGTGGGCATAGGGAGGGAAAGGAGTTCGGCGACAACAGGCTTGAAGATCTGGACCATGTAGTGGAGGCGTTCGGCGGCGGCAGAAACAGAGCCGGCGGCTTGAGCCCAGGAGAGATCGAAACCGTTAGAGAAGAATTTTCCATGGGAAGTAGTGATGAGAACGGAGCCTGGGGAGGCTTCGGACTTGACTTTGGAAAGAGCTTTGAGTATGGAGGCGATGAAGGAGGGGCTGAGGCGGTGCTCGTCATCGCCGGTGATGGTTAG

mRNA sequence

ATGGCAGCAATGGTTGGCATAGGAAGGGAAAGGAGTTGGGCTACGAGGGGCTTGAAGATCTGGATTATGTGGTTTAAGCGGTCACGGGCACCAGAAATGGAGCCGGCGGCAAGAGCCCAGGGGAGATCGAAGCCGTTTGAGAAGAATTTGCCATGGGAAGTTGTGATGAGAACTGAACCAGGGGTGGCTTGTGCCTTAACCTGTGAAAGGGCTTTAAGAATGGAGTTGATTAAGGATGGACCGAGGCGGACCGGCAACATAGCTATTGTCACAGACGGTTGCCGGCTGTTGGCGTCCCGACAAACAATTATCCGGTCATCCCTCAATGGTTCACCGTTCCAGTTTCTCTCCGCCAACTGTTCCCCGAGCCTTACGGCAGCCTTCATGACGCCGTCCGCGCCTTCGTGCGCCGATTCGACGATCCCCATCCTTACCGCCGATTCGCCTTTCACTTTCATTCCCGTCAAAGCCGGCCGCGGCGGCGTGACCGGCGATGGCGGCGATTGTGGGCATAGGGAGGGAAAGGAGTTCGGCGACAACAGGCTTGAAGATCTGGACCATGTAGTGGAGGCGTTCGGCGGCGGCAGAAACAGAGCCGGCGGCTTGAGCCCAGGAGAGATCGAAACCGTTAGAGAAGAATTTTCCATGGGAAGTAGTGATGAGAACGGAGCCTGGGGAGGCTTCGGACTTGACTTTGGAAAGAGCTTTGAGTATGGAGGCGATGAAGGAGGGGCTGAGGCGGTGCTCGTCATCGCCGGTGATGGTTAG

Coding sequence (CDS)

ATGGCAGCAATGGTTGGCATAGGAAGGGAAAGGAGTTGGGCTACGAGGGGCTTGAAGATCTGGATTATGTGGTTTAAGCGGTCACGGGCACCAGAAATGGAGCCGGCGGCAAGAGCCCAGGGGAGATCGAAGCCGTTTGAGAAGAATTTGCCATGGGAAGTTGTGATGAGAACTGAACCAGGGGTGGCTTGTGCCTTAACCTGTGAAAGGGCTTTAAGAATGGAGTTGATTAAGGATGGACCGAGGCGGACCGGCAACATAGCTATTGTCACAGACGGTTGCCGGCTGTTGGCGTCCCGACAAACAATTATCCGGTCATCCCTCAATGGTTCACCGTTCCAGTTTCTCTCCGCCAACTGTTCCCCGAGCCTTACGGCAGCCTTCATGACGCCGTCCGCGCCTTCGTGCGCCGATTCGACGATCCCCATCCTTACCGCCGATTCGCCTTTCACTTTCATTCCCGTCAAAGCCGGCCGCGGCGGCGTGACCGGCGATGGCGGCGATTGTGGGCATAGGGAGGGAAAGGAGTTCGGCGACAACAGGCTTGAAGATCTGGACCATGTAGTGGAGGCGTTCGGCGGCGGCAGAAACAGAGCCGGCGGCTTGAGCCCAGGAGAGATCGAAACCGTTAGAGAAGAATTTTCCATGGGAAGTAGTGATGAGAACGGAGCCTGGGGAGGCTTCGGACTTGACTTTGGAAAGAGCTTTGAGTATGGAGGCGATGAAGGAGGGGCTGAGGCGGTGCTCGTCATCGCCGGTGATGGTTAG

Protein sequence

MAAMVGIGRERSWATRGLKIWIMWFKRSRAPEMEPAARAQGRSKPFEKNLPWEVVMRTEPGVACALTCERALRMELIKDGPRRTGNIAIVTDGCRLLASRQTIIRSSLNGSPFQFLSANCSPSLTAAFMTPSAPSCADSTIPILTADSPFTFIPVKAGRGGVTGDGGDCGHREGKEFGDNRLEDLDHVVEAFGGGRNRAGGLSPGEIETVREEFSMGSSDENGAWGGFGLDFGKSFEYGGDEGGAEAVLVIAGDG
Homology
[Close]
BLAST of CmaCh14G017980 vs. TrEMBL
Match: A0A0S3SUR8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G357900 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 159 RGGVTGDGGDCGHREGKEFGDNRLEDLDHVVEAFGGGRNRAGGLSPGEIETVREEFSMGS 218
           RG VTGD GD G  +G+E G++  + + H  EA  G         P E+E + EE ++G 
Sbjct: 127 RGSVTGDSGDGGDGKGEECGEDGAKGVRHSAEADAGSLRVGSCTRPAEVEPIAEESALGG 186

Query: 219 SDENGAWGGFGLDFGKSFEYGGDEGGAEAVLVIAGDG 256
            DE G  G  G+D G+S E GG+E G E VL +A  G
Sbjct: 187 GDEGGGGGCLGVDLGESGEEGGEECGVETVLFVAFTG 223

[Close]
BLAST of CmaCh14G017980 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.9e-09
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 33 MEPAARAQGRSKPFEKNLPWEVVMRTEPG--VACALTCERALRMELIKDG 81
          ME A R  GRS+P EKNLPW+VV+RTEPG  +A ALT +RAL ME IKDG
Sbjct: 1  MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDG 50

[Close]
BLAST of CmaCh14G017980 vs. NCBI nr
Match: gi|965610121|dbj|BAT96612.1| (hypothetical protein VIGAN_08357900 [Vigna angularis var. angularis])

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 159 RGGVTGDGGDCGHREGKEFGDNRLEDLDHVVEAFGGGRNRAGGLSPGEIETVREEFSMGS 218
           RG VTGD GD G  +G+E G++  + + H  EA  G         P E+E + EE ++G 
Sbjct: 127 RGSVTGDSGDGGDGKGEECGEDGAKGVRHSAEADAGSLRVGSCTRPAEVEPIAEESALGG 186

Query: 219 SDENGAWGGFGLDFGKSFEYGGDEGGAEAVLVIAGDG 256
            DE G  G  G+D G+S E GG+E G E VL +A  G
Sbjct: 187 GDEGGGGGCLGVDLGESGEEGGEECGVETVLFVAFTG 223

[Close]
BLAST of CmaCh14G017980 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 33 MEPAARAQGRSKPFEKNLPWEVVMRTEPG--VACALTCERALRMELIKDG 81
          ME A R  GRS+P EKNLPW+VV+RTEPG  +A ALT +RAL ME IKDG
Sbjct: 1  MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDG 50

The following BLAST results are available for this feature:
BLAST of CmaCh14G017980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S3SUR8_PHAAN3.4e-0941.24Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G357900 PE=... [more]
A0A0A0L773_CUCSA9.9e-0968.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of CmaCh14G017980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|965610121|dbj|BAT96612.1|4.9e-0941.24hypothetical protein VIGAN_08357900 [Vigna angularis var. angularis][more]
gi|700201751|gb|KGN56884.1|1.4e-0868.00hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G017980.1CmaCh14G017980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G017980ClCG05G004440Watermelon (Charleston Gray)cmawcgB233
CmaCh14G017980CmoCh14G018370Cucurbita moschata (Rifu)cmacmoB245
CmaCh14G017980Lsi05G017000Bottle gourd (USVL1VR-Ls)cmalsiB245
CmaCh14G017980Cp4.1LG03g09990Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G017980Cp4.1LG08g03540Cucurbita pepo (Zucchini)cmacpeB292
CmaCh14G017980CsGy3G012320Cucumber (Gy14) v2cgybcmaB318
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G017980Melon (DHL92) v3.5.1cmameB234
CmaCh14G017980Melon (DHL92) v3.5.1cmameB242
CmaCh14G017980Watermelon (Charleston Gray)cmawcgB235
CmaCh14G017980Watermelon (Charleston Gray)cmawcgB240
CmaCh14G017980Watermelon (97103) v1cmawmB242
CmaCh14G017980Watermelon (97103) v1cmawmB236
CmaCh14G017980Watermelon (97103) v1cmawmB250
CmaCh14G017980Cucurbita pepo (Zucchini)cmacpeB259
CmaCh14G017980Cucurbita pepo (Zucchini)cmacpeB266
CmaCh14G017980Cucurbita pepo (Zucchini)cmacpeB290
CmaCh14G017980Bottle gourd (USVL1VR-Ls)cmalsiB225
CmaCh14G017980Bottle gourd (USVL1VR-Ls)cmalsiB247
CmaCh14G017980Cucumber (Gy14) v2cgybcmaB188
CmaCh14G017980Melon (DHL92) v3.6.1cmamedB266
CmaCh14G017980Melon (DHL92) v3.6.1cmamedB273
CmaCh14G017980Silver-seed gourdcarcmaB0313
CmaCh14G017980Silver-seed gourdcarcmaB0325
CmaCh14G017980Silver-seed gourdcarcmaB1075
CmaCh14G017980Silver-seed gourdcarcmaB1320
CmaCh14G017980Silver-seed gourdcarcmaB1485
CmaCh14G017980Cucumber (Chinese Long) v3cmacucB0277
CmaCh14G017980Cucumber (Chinese Long) v3cmacucB0291
CmaCh14G017980Watermelon (97103) v2cmawmbB263
CmaCh14G017980Watermelon (97103) v2cmawmbB266
CmaCh14G017980Watermelon (97103) v2cmawmbB273
CmaCh14G017980Wax gourdcmawgoB0311
CmaCh14G017980Wax gourdcmawgoB0344
CmaCh14G017980Wax gourdcmawgoB0346
CmaCh14G017980Cucurbita maxima (Rimu)cmacmaB249
CmaCh14G017980Cucurbita maxima (Rimu)cmacmaB259
CmaCh14G017980Cucurbita maxima (Rimu)cmacmaB284
CmaCh14G017980Cucurbita maxima (Rimu)cmacmaB296
CmaCh14G017980Cucumber (Gy14) v1cgycmaB0709
CmaCh14G017980Cucumber (Gy14) v1cgycmaB1054
CmaCh14G017980Cucurbita moschata (Rifu)cmacmoB251
CmaCh14G017980Cucurbita moschata (Rifu)cmacmoB271
CmaCh14G017980Cucurbita moschata (Rifu)cmacmoB279
CmaCh14G017980Wild cucumber (PI 183967)cmacpiB240
CmaCh14G017980Wild cucumber (PI 183967)cmacpiB255
CmaCh14G017980Cucumber (Chinese Long) v2cmacuB238
CmaCh14G017980Cucumber (Chinese Long) v2cmacuB253