CmaCh14G017580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G017580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr14 : 12817461 .. 12818084 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGAAGAAAAAATGGTGATCTAATAGAGCCAAGGCCATGCCATGAATATACAATGCCAGATGCCAAAAAAGTTGATACTAAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCAACAGAAGAATCTATGCAAGTTCCTGAGAGTGAAGACAGATTCACGGATCCCAATTAAGAGAAAACATTTGGGACCTGAAACAGTCGTTGAAGACAATATTGCAACTCAATTTAAGATTTAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGGAACAATGCAGAAGAAATTGAAATTTCTCCTGGGTTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTCATATTTATCTATTGGAGATTGCAAGCATAAGAACGTGGAGATGGGAAAGACGACGGGAATTTCAACAAACAATGGACATGAAGCGGAACGACAAGAACCAGATGAAAGCCTATTTGAATCACCAGTTCCATTCCCCACATTCGGAGGAGAAAATCAAGAATCACCACGAAGAACGAGCAAGGAATGA

mRNA sequence

ATGTGGAGAAGAAAAAATGGTGATCTAATAGAGCCAAGGCCATGCCATGAATATACAATGCCAGATGCCAAAAAAGTTGATACTAAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCAACAGAAGAATCTATGCAAGTTCCTGAGAATTTAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGGAACAATGCAGAAGAAATTGAAATTTCTCCTGGGTTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTCATATTTATCTATTGGAGATTGCAAGCATAAGAACGTGGAGATGGGAAAGACGACGGGAATTTCAACAAACAATGGACATGAAGCGGAACGACAAGAACCAGATGAAAGCCTATTTGAATCACCAGTTCCATTCCCCACATTCGGAGGAGAAAATCAAGAATCACCACGAAGAACGAGCAAGGAATGA

Coding sequence (CDS)

ATGTGGAGAAGAAAAAATGGTGATCTAATAGAGCCAAGGCCATGCCATGAATATACAATGCCAGATGCCAAAAAAGTTGATACTAAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCAACAGAAGAATCTATGCAAGTTCCTGAGAATTTAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGGAACAATGCAGAAGAAATTGAAATTTCTCCTGGGTTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTCATATTTATCTATTGGAGATTGCAAGCATAAGAACGTGGAGATGGGAAAGACGACGGGAATTTCAACAAACAATGGACATGAAGCGGAACGACAAGAACCAGATGAAAGCCTATTTGAATCACCAGTTCCATTCCCCACATTCGGAGGAGAAAATCAAGAATCACCACGAAGAACGAGCAAGGAATGA

Protein sequence

MWRRKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSSCLPTEESMQVPENLNAIQVEFNTIGSHSRNNAEEIEISPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAERQEPDESLFESPVPFPTFGGENQESPRRTSKE

Homology

[Close]

BLAST of CmaCh14G017580 vs. TrEMBL
Match: A0A0A0L8I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144220 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 104/210 (49.52%), Postives = 123/210 (58.57%), Query Frame = 1


Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDK----------------EPATELIRHNSSC--- 63
           +K GDL+EPR CH YT+P AK VDTKDK                E    +   NSS    
Sbjct: 383 KKKGDLVEPRQCHGYTVPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIP 442

Query: 64  -LPTEESMQVPENL-----------------NAIQVEFNTIGSHSRNNAEEIEISPGFVA 123
            +  +E  Q+ E+L                 N ++ EFNT  SHS NNAEE E+SP FV 
Sbjct: 443 EVENKEEFQLREHLGTETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVT 502

Query: 124 KNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAE 177
           +N+  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +STNN HE E
Sbjct: 503 ENR--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVE 562

[Close]

BLAST of CmaCh14G017580 vs. NCBI nr
Match: gi|778678361|ref|XP_011650954.1| (PREDICTED: myb-like protein X [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 104/210 (49.52%), Postives = 123/210 (58.57%), Query Frame = 1


Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDK----------------EPATELIRHNSSC--- 63
           +K GDL+EPR CH YT+P AK VDTKDK                E    +   NSS    
Sbjct: 383 KKKGDLVEPRQCHGYTVPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIP 442

Query: 64  -LPTEESMQVPENL-----------------NAIQVEFNTIGSHSRNNAEEIEISPGFVA 123
            +  +E  Q+ E+L                 N ++ EFNT  SHS NNAEE E+SP FV 
Sbjct: 443 EVENKEEFQLREHLGTETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVT 502

Query: 124 KNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAE 177
           +N+  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +STNN HE E
Sbjct: 503 ENR--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVE 562

[Close]

BLAST of CmaCh14G017580 vs. NCBI nr
Match: gi|659076299|ref|XP_008438605.1| (PREDICTED: myb-like protein X isoform X2 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 105/211 (49.76%), Postives = 124/211 (58.77%), Query Frame = 1


Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 358 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 417

Query: 64  ------------ENLNAIQVEFNTIGSHSR-----------------NNAEEIEISPGFV 123
                       E L    V+ + I + S+                  NAEE E+SP FV
Sbjct: 418 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 477

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +ST+N HEA
Sbjct: 478 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEA 537

[Close]

BLAST of CmaCh14G017580 vs. NCBI nr
Match: gi|659076301|ref|XP_008438606.1| (PREDICTED: dentin sialophosphoprotein-like isoform X3 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 105/211 (49.76%), Postives = 124/211 (58.77%), Query Frame = 1


Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 276 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 335

Query: 64  ------------ENLNAIQVEFNTIGSHSR-----------------NNAEEIEISPGFV 123
                       E L    V+ + I + S+                  NAEE E+SP FV
Sbjct: 336 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 395

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +ST+N HEA
Sbjct: 396 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEA 455

[Close]

BLAST of CmaCh14G017580 vs. NCBI nr
Match: gi|659076297|ref|XP_008438604.1| (PREDICTED: myb-like protein X isoform X1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-37
Identity = 105/211 (49.76%), Postives = 124/211 (58.77%), Query Frame = 1


Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 383 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 442

Query: 64  ------------ENLNAIQVEFNTIGSHSR-----------------NNAEEIEISPGFV 123
                       E L    V+ + I + S+                  NAEE E+SP FV
Sbjct: 443 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 502

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +ST+N HEA
Sbjct: 503 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEA 562

The following BLAST results are available for this feature:

BLAST of CmaCh14G017580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G017580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I8_CUCSA	1.7e-39	49.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144220 PE=4 SV=1	[more]

BLAST of CmaCh14G017580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G017580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778678361\|ref\|XP_011650954.1\|	2.4e-39	49.52	PREDICTED: myb-like protein X [Cucumis sativus]	[more]
gi\|659076299\|ref\|XP_008438605.1\|	1.3e-37	49.76	PREDICTED: myb-like protein X isoform X2 [Cucumis melo]	[more]
gi\|659076301\|ref\|XP_008438606.1\|	1.3e-37	49.76	PREDICTED: dentin sialophosphoprotein-like isoform X3 [Cucumis melo]	[more]
gi\|659076297\|ref\|XP_008438604.1\|	1.3e-37	49.76	PREDICTED: myb-like protein X isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G017580.1	CmaCh14G017580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G017580	Cucsa.254720	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G017580	Cla021583	Watermelon (97103) v1	cmawmB242
CmaCh14G017580	Csa3G144220	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G017580	MELO3C006492	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G017580	ClCG05G004780	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G017580	CSPI03G12680	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G017580	CmoCh06G013710	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G017580	CmoCh14G017990	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G017580	Cp4.1LG08g03780	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G017580	MELO3C006492.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G017580	CsaV3_3G012810	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G017580	Cla97C05G085850	Watermelon (97103) v2	cmawmbB263
CmaCh14G017580	Bhi01G000543	Wax gourd	cmawgoB0328
CmaCh14G017580	Carg16603	Silver-seed gourd	carcmaB0325
CmaCh14G017580	Carg06180	Silver-seed gourd	carcmaB1320

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G017580	CmaCh06G013560	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G017580	Cucumber (Chinese Long) v3	cmacucB0277
CmaCh14G017580	Cucumber (Chinese Long) v3	cmacucB0278
CmaCh14G017580	Watermelon (97103) v2	cmawmbB266
CmaCh14G017580	Watermelon (97103) v2	cmawmbB273
CmaCh14G017580	Wax gourd	cmawgoB0310
CmaCh14G017580	Wax gourd	cmawgoB0344
CmaCh14G017580	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G017580	Cucurbita maxima (Rimu)	cmacmaB260
CmaCh14G017580	Cucurbita maxima (Rimu)	cmacmaB267
CmaCh14G017580	Cucurbita maxima (Rimu)	cmacmaB296
CmaCh14G017580	Cucumber (Gy14) v1	cgycmaB1073
CmaCh14G017580	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G017580	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G017580	Wild cucumber (PI 183967)	cmacpiB240
CmaCh14G017580	Cucumber (Chinese Long) v2	cmacuB238
CmaCh14G017580	Melon (DHL92) v3.5.1	cmameB235
CmaCh14G017580	Watermelon (Charleston Gray)	cmawcgB235
CmaCh14G017580	Watermelon (Charleston Gray)	cmawcgB240
CmaCh14G017580	Watermelon (97103) v1	cmawmB236
CmaCh14G017580	Watermelon (97103) v1	cmawmB250
CmaCh14G017580	Cucurbita pepo (Zucchini)	cmacpeB259
CmaCh14G017580	Cucurbita pepo (Zucchini)	cmacpeB266
CmaCh14G017580	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G017580	Cucurbita pepo (Zucchini)	cmacpeB290
CmaCh14G017580	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G017580	Bottle gourd (USVL1VR-Ls)	cmalsiB245
CmaCh14G017580	Bottle gourd (USVL1VR-Ls)	cmalsiB247
CmaCh14G017580	Cucumber (Gy14) v2	cgybcmaB188
CmaCh14G017580	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G017580	Melon (DHL92) v3.6.1	cmamedB267
CmaCh14G017580	Silver-seed gourd	carcmaB0313
CmaCh14G017580	Silver-seed gourd	carcmaB0453
CmaCh14G017580	Silver-seed gourd	carcmaB1075