CmaCh14G015890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G015890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr14 : 11920947 .. 11924375 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAACTTACATACAAGGTTGGAGCCTTGGCTCTTGTTCTGGCATTTCTGATTGTGGGATTTGCTGAAAGCCGGAAGTTGGAGAAGGAGACGCTTGGTGGTGGTCTTGGCGGTGGTGCTGGTGGTGGGTTTGGAGGTGGAGCTGGAGGTGGAGCTGGAGGTGGCCTTGGTGGTGGTTTCGGAGGTGGGCATGGCGGTGGATTAGGAGGCGGAGCTGGAGGAGGAGCTGGAGGCGGATTCGGAGGTGGCCATGGCGGCGGAATTGGAGGGGGAGGTGGATTAGGAGGCGGAGCTGGAGGTGGATTTGGTGGCGGTAAAGGAGGTGGATTTGGAGGTGGAGCTGGTGGCGGAGCGGGAGGTGGTTTTGGAGGCGGAGCTGGCGGGGGAGCGGGAGGTGGAGCTGGAGGCGGAGCAGGAGGTGGGTTCGGAGGTGGTAAAGGAGGTGGATTTGGAGGCGGAGCAGGAGGTGGCCATGGAGGCGGAGCGGGAGGTGGATTTGGAGGCGGAGCTGGTGGAGGAGCGGGAGGGGGCTTTGGAGGCGGAGCTGGCGGGGGAGCGGGAGGTGGTTTCGGAGGAGGCCATGGGGGCGGAGCAGGAGGAGGTTTTGGAGGTGGTAAAGGAGGTGGATTTGGAGGCGGAGCAGGTGGAGGCTTTGGTGGCGGTTCAGGTGGAGGAGGAGGCTTTGGTGGCGGTTCAGGTGGAGGATTCGGCGGCAGAGTCTAAAATCAGACTACATCAAATATGATGTTAAAAAGGGAGTAGATATAGATTACTCCTAAAGTCCTGGAAATTTTCCCAATATATTTACAAAAACTAATATGCATGCACCCACCAGAAACATGCTCATGCAAAGACTACTACTTATTTGTACTTCCAATTCTACGTAATAAGATAACCAGAAAAAGATTTAAAAAAGAAAAAAAAGAAGAATTTGAATTCAATATTTCGTCTCATTGGACAAATAGTTTTAAGAATCTTTGCGAAATAGCTTGCAAAAAGAACCCGAATAGACCGTAAATTTATAAAAATAAAGTGGGGAAGGACTAGCGAGAGGAGTGAATTAGCTTAGCCTTTTTTTGTTTTGCTTATAGCCACGCAGGAAGCCAATCGGCCCCTTCAATAAAGCTGATGTCCATGAACTGGGCAGCTTCCTTTTCCGTTAGCTGTTTGGCCCATGGTGCTCGGTTTCCCTTTTCTGCTCCTGGTCCATGGCAATCATATTCTGAATGATACAGATTCCTGTAATGACAAAAACGTTTAGTTCAAGTAATTATGGACCTTTTAAAAACTAGTTCAAGTTGAAAATTGTTGGGAGAGAGTTTTACGTTGACTAATTTAGAAGAGTATGATCATGAATTTATAAATAAGAAATATATCTTAATTGGCATGAGGCCGTTTGGAAAAACAAATAACAAAGTCAGAGAGTGTATGTTCAAAGAGGAAAATATCATACTATTATGCAAGTTCGTGATTCTTAATAGTTCAGTAAACGGCTAAATCAAACATAATTCAACTAGTTAAAGACTAGTTCATGTTGAGAATTGTTGAGAGGGAGTCTCGCATTGGCTAATTTAGAGGATCGATCATGGGTTTAAGTAAGGAATATATCTAGTAAACGGCTAAATCAAAAATAATTAAACTAGTTAAAGACTAGTTCATGTTGAGAATTGTTGAGAGGGGAGTCTCACATTGGCTAATTTAGTGGATCGATCATGGGTTTAAGTAAGAAATATATCTCCTTTTAAGAAAACAAACCCTGAGAAATTATGTTCAAAGTGGACCATATCATAGCATGGAAAAGGTCCTTGATTCCTAACCATTTAGTTTTAGTAATTATAAACGCGGGGGAGGGAGTGCTTACTCTGTGCCACCAGCATAGCTCCAATTGGTCCAACCAGCAGGAAGAACAGTCATGGAGAAGTAAGTCTTAGCAAAAACGACTCTGGAAAATGCACCTTTTGCTCTCCCCAAATACACACCGCCTATTCCGTAAACCTTTCCTCTGATGAAAACAAACCCGCTGTTCTCATCTGCACTTTTTCTGTTTTGTGCTGTGACTGAACCACGGACCGTCAATCTCTTGTCATCAATCACAAATATCTCACAATTCTGCATCCACAGCAACAATATAACATCGTTTTTCATGGAAAATCATCACATCCCACCAAGAAAAATGAAAGAAAGATTAGACTATAATGAAATTACTTGGTTACATGAGCTTCTAAATTCTTAAGTTTACCTGTTTTTAACATACTATATTTTTCCTGAAGTAAATAAGAATCGGAGATCTCTATTAACATGTATACGGTTAGAAATGAAATTAAGGATCTCTACAATGGTACGATATTGTCCACTTTAAGCATATAAGTTTTCATGACTTTGCTTTAAGCTTTCCAAAAGACCTTATACTAATGGAGATGTATTCCTTACTTATAAACTCATGATCCCCAACCATCCTCCCCTCAAACAAAGTACACTGTAGAGCCTCCCCTAAGGCCTTGGAGCCCTCGAACAGCCTCCTCTTAATCGAGACTCGACTCCTTTTTTAGAGTCCTCGAACAAAGTACACCCTTTGTTCAACACTCACTTTTGACTACACCTTCAAGGCTCATAACTTTTCCACATTTTAGGATTCTATTGACATGACTAAGTTAAGGACGTGGCTCATAACTTCTTTGTTCGACATTTTAGGATTCTATTGACATGACTAAGTTAAGGACGTGATTCATATATCATGTTAGGAATCACGGATCTCCACAATGGTATGATATTGTCTACTTTGAGCATAAGCTCTCATGACTTTGCTTTAGGCTTCCCAAAATACCTCATACCAATGAAAATGTATTCCTTGCTTATAAACTATGATCATTCCCTAAACTAGTCAACGTAGGACTCCCTCTCAACAATTCTCGTCATGCTTCAATTTTTATCTTCTAACTTAACCAAAAAAATTTAGTTGTCTAAAATTGATGTTTGAAAACTATTTATAAGTTTAAGTTTTGAAAACATTACAAGAAAGTGAAGAACAAACATGGAAAGAGCAAGAATAACGTTTATAAATTTAGCTTTAAGAAACTAAAAACCAAAATTCAAAAATGAAATATGAAACGGTTATTAAGAAAACTGTAAATGTTCCATGCATAAAACACAAAGGTATTCTAAATTCTTCAGAGAGCAAGCAACAGTAGAGAAAGGAAGGGAAAAGAATTACATGGAAAACGGATTTGCCGCGGCCAAAGATGAAATCAATTGAGCCTTGAATGTAGCAACCGTCATAATAATGTCTGCCTTTGTAATCGAACAGCGTATTGTGAGTGCTGTAGAATCCACAATGGTAAAATGCGACATTATCTGCGGCAACGAATGCCGCTACCGACTGATTTTGCGATGTGTAAGCCACACCAGTCGGAGCCTCATTCTGTATAG

mRNA sequence

ATGGCCAAACTTACATACAAGGTTGGAGCCTTGGCTCTTGTTCTGGCATTTCTGATTGTGGGATTTGCTGAAAGCCGGAAGTTGGAGAAGGAGACGCTTGGTGGTGGTCTTGGCGGTGGTGCTGGTGGTGGGTTTGGAGGTGGAGCTGGAGGTGGAGCTGGAGGTGGCCTTGGTGGTGGTTTCGGAGGTGGGCATGGCGGTGGATTAGGAGGCGGAGCTGGAGGAGGAGCTGGAGGCGGATTCGGAGGTGGCCATGGCGGCGGAATTGGAGGGGGAGGTGGATTAGGAGGCGGAGCTGGAGGTGGATTTGGTGGCGGTAAAGGAGGTGGATTTGGAGGTGGAGCTGGTGGCGGAGCGGGAGGTGGTTTTGGAGGCGGAGCTGGCGGGGGAGCGGGAGGTGGAGCTGGAGGCGGAGCAGGAGGTGGGTTCGGAGGTGGTAAAGGAGGTGGATTTGGAGGCGGAGCAGGAGGTGGCCATGGAGGCGGAGCGGGAGGTGGATTTGGAGGCGGAGCTGGTGGAGGAGCGGGAGGGGGCTTTGGAGGCGGAGCTGGCGGGGGAGCGGGAGGTGGTTTCGGAGGAGGCCATGGGGGCGGAGCAGGAGGAGGTTTTGGAGGTGGTAAAGGAGGTGGATTTGGAGGCGGAGCAGGTGGAGGCTTTGGTGGCGGTTCAGGTGGAGGAGGAGGCTTTGGTGGCGGTTCAGGTGGAGGATTCGGCGGCAGACCACGCAGGAAGCCAATCGGCCCCTTCAATAAAGCTGATGTCCATGAACTGGGCAGCTTCCTTTTCCCGTATTGTGAGTGCTGTAGAATCCACAATGGTAAAATGCGACATTATCTGCGGCAACGAATGCCGCTACCGACTGATTTTGCGATGTGTAAGCCACACCAGTCGGAGCCTCATTCTGTATAG

Coding sequence (CDS)

ATGGCCAAACTTACATACAAGGTTGGAGCCTTGGCTCTTGTTCTGGCATTTCTGATTGTGGGATTTGCTGAAAGCCGGAAGTTGGAGAAGGAGACGCTTGGTGGTGGTCTTGGCGGTGGTGCTGGTGGTGGGTTTGGAGGTGGAGCTGGAGGTGGAGCTGGAGGTGGCCTTGGTGGTGGTTTCGGAGGTGGGCATGGCGGTGGATTAGGAGGCGGAGCTGGAGGAGGAGCTGGAGGCGGATTCGGAGGTGGCCATGGCGGCGGAATTGGAGGGGGAGGTGGATTAGGAGGCGGAGCTGGAGGTGGATTTGGTGGCGGTAAAGGAGGTGGATTTGGAGGTGGAGCTGGTGGCGGAGCGGGAGGTGGTTTTGGAGGCGGAGCTGGCGGGGGAGCGGGAGGTGGAGCTGGAGGCGGAGCAGGAGGTGGGTTCGGAGGTGGTAAAGGAGGTGGATTTGGAGGCGGAGCAGGAGGTGGCCATGGAGGCGGAGCGGGAGGTGGATTTGGAGGCGGAGCTGGTGGAGGAGCGGGAGGGGGCTTTGGAGGCGGAGCTGGCGGGGGAGCGGGAGGTGGTTTCGGAGGAGGCCATGGGGGCGGAGCAGGAGGAGGTTTTGGAGGTGGTAAAGGAGGTGGATTTGGAGGCGGAGCAGGTGGAGGCTTTGGTGGCGGTTCAGGTGGAGGAGGAGGCTTTGGTGGCGGTTCAGGTGGAGGATTCGGCGGCAGACCACGCAGGAAGCCAATCGGCCCCTTCAATAAAGCTGATGTCCATGAACTGGGCAGCTTCCTTTTCCCGTATTGTGAGTGCTGTAGAATCCACAATGGTAAAATGCGACATTATCTGCGGCAACGAATGCCGCTACCGACTGATTTTGCGATGTGTAAGCCACACCAGTCGGAGCCTCATTCTGTATAG

Protein sequence

MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGGGAGGGFGGGAGGGAGGGLGGGFGGGHGGGLGGGAGGGAGGGFGGGHGGGIGGGGGLGGGAGGGFGGGKGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGGGHGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGGSGGGGGFGGGSGGGFGGRPRRKPIGPFNKADVHELGSFLFPYCECCRIHNGKMRHYLRQRMPLPTDFAMCKPHQSEPHSV

Homology

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BLAST of CmaCh14G015890 vs. Swiss-Prot
Match: GRP1_ARATH (Glycine-rich cell wall structural protein OS=Arabidopsis thaliana GN=At3g17050 PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 173/211 (81.99%), Postives = 179/211 (84.83%), Query Frame = 1


Query: 33  LGGGLGGGAGGGFGGGAGGGAGGGLGGG--FGGGHGGGLGGGAGGGAGGGFGGGHGGGIG 92
           +GGG GGG+GGG GGG GGGAGGG GGG   GGGHGGG+GGGAGGGAGGG GGGHGGGIG
Sbjct: 129 IGGGAGGGSGGGLGGGIGGGAGGGAGGGGGLGGGHGGGIGGGAGGGAGGGLGGGHGGGIG 188

Query: 93  GG--GGLGGGAGGGFGGGKGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKG 152
           GG  GG GGG GGG GGG GGG GGG G G GGG GGG GGG GGGAGGG GGG GGG G
Sbjct: 189 GGAGGGSGGGLGGGIGGGAGGGAGGGGGAGGGGGLGGGHGGGFGGGAGGGLGGGAGGGTG 248

Query: 153 GGFGGGAGGGHGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKG 212
           GGFGGGAGGG GGGAGGGFGGGAGGGAGGGFGGGAGGGAGGG GGG GGGAGGG GGG G
Sbjct: 249 GGFGGGAGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGFGGGAGGGHGGGVG 308

Query: 213 GGFGGGAGGGFGGGSGGGGGFGGGSGGGFGG 240
           GGFGGG+GGGFGGG+GGG   GGG+GGGFGG
Sbjct: 309 GGFGGGSGGGFGGGAGGGA--GGGAGGGFGG 337

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BLAST of CmaCh14G015890 vs. TrEMBL
Match: A0A0A0L5D7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G166350 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 196/263 (74.52%), Postives = 201/263 (76.43%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGGGAG----GGFGGGAGGGAGGG 60
           MAKLT++ GALALV+A L+VG AESRKLEKETLGGGLGGG G    GG GGG G G GGG
Sbjct: 1   MAKLTFRNGALALVVALLVVGLAESRKLEKETLGGGLGGGGGLGGGGGLGGGGGLGGGGG 60

Query: 61  LGGGFGGGHGGGLGGGAGGGAGGGFGGGHG----------GGIGGGGGLGGGAGGGFGGG 120
           LGGG G G GGGLGGG G G GGG GGG G          GG+GGGGGLGGGAGGGFGGG
Sbjct: 61  LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGAGGGFGGG 120

Query: 121 KGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGGGHGGGAGGG 180
            GGG  GGAGGG GGG GGG GGG GGG GGG GGGFGGGKGGGFGGG GGG GGG GGG
Sbjct: 121 AGGG--GGAGGGVGGGSGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGG 180

Query: 181 FGGGAGGG----AGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGG 240
           FGGG GGG     GGGFGGG GGG GGG GGG GGG GGGFGGGKGGGFGGG GGGFGGG
Sbjct: 181 FGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGG 240

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BLAST of CmaCh14G015890 vs. TrEMBL
Match: M4E096_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-12
Identity = 185/244 (75.82%), Postives = 193/244 (79.10%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGGGAGGGFGGGAGGGAGGGLGGG 60
           M K+++  G LAL+L  + +G  E R+ EKETLGGG GGG GGGFGGG G          
Sbjct: 1   MGKVSF--GFLALMLVVVAIGVVECRRFEKETLGGG-GGGLGGGFGGGKG---------- 60

Query: 61  FGGGHGGGLGGGAGGGAGGGFGGGHGGGIGGG-GGLGGGAGGGFGGGKG--GGFGGGAGG 120
           FGGG GGG G GAGGG GGG GGGHGGGIGGG GG GGG GGGFGGGKG  GG GGG GG
Sbjct: 61  FGGGIGGGGGAGAGGGFGGGVGGGHGGGIGGGAGGGGGGLGGGFGGGKGFGGGIGGGGGG 120

Query: 121 GAGGGFGGGAGGGAGGGAGGGAGGGFGGGKG----GGFGGGAGGGHGGGAGGGFGGGAGG 180
           GAGGGFGGGAGGG GGGAGGGAGGGFGGG G    GGFGGGAGGGHGGGAGGGFGGG+GG
Sbjct: 121 GAGGGFGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGHGGGAGGGFGGGSGG 180

Query: 181 GAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGGSGGGGGFGGGS 238
           G GGG GGGAGGG GGG GGGHGGGAGGGFGGG GGGFGGGAGGG GGG GGGGG GGG 
Sbjct: 181 GFGGGAGGGAGGGFGGGAGGGHGGGAGGGFGGGSGGGFGGGAGGGAGGGFGGGGGAGGGF 231

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BLAST of CmaCh14G015890 vs. TrEMBL
Match: A0A0D3BBQ2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.6e-11
Identity = 188/262 (71.76%), Postives = 198/262 (75.57%), Query Frame = 1


Query: 11  LALVLAFLIVGFAESRKLEKETLGG-------------------GLGGGAGGGFGGGAGG 70
           L+L+   +++G  E R+LEKETLGG                   G GGGAGGGFGGG GG
Sbjct: 9   LSLMFVVVVIGVVECRRLEKETLGGSGGGIGGGFGGGKGFGGGIGGGGGAGGGFGGGVGG 68

Query: 71  GAGGGLGGGFGGGHGGGLGGGAGG--GAGGGFGGGHGGGIGG----------GGGLGGGA 130
           G GGGLGGG GGGHGG +GGG+GG  G GGG GGGHGGGIGG          GGGLGGG 
Sbjct: 69  GHGGGLGGGIGGGHGGDIGGGSGGGLGGGGGLGGGHGGGIGGGAGGGAGGGAGGGLGGGH 128

Query: 131 GGGFGGGKGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGGGH 190
           GGG GGG GGG GGG GGGAGGG GGGAGGGAGGG GGGAGGG GGG GGG GGGAGGG 
Sbjct: 129 GGGIGGGAGGGAGGGLGGGAGGGIGGGAGGGAGGGLGGGAGGGLGGGHGGGIGGGAGGGA 188

Query: 191 GGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGF 240
           GGGAGGG GGGAGGG GGG GGGAGGGAGGGFGGGHGGGAGGG GGG GGG GGGAGGGF
Sbjct: 189 GGGAGGGAGGGAGGGLGGGHGGGAGGGAGGGFGGGHGGGAGGGAGGGLGGGAGGGAGGGF 248

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BLAST of CmaCh14G015890 vs. TrEMBL
Match: A0A0D3CJF7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 187/264 (70.83%), Postives = 196/264 (74.24%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGG--------------------- 60
           M K+++  G LAL+L  + +G  E R+ EKETLGGG GG                     
Sbjct: 1   MGKVSF--GFLALMLVVVAIGVVECRRFEKETLGGGGGGLGGGFGGGKGFGGGIGGGGGA 60

Query: 61  GAGGGFGGGAGGGAGGGLGGGFGGGHGGGLGGGAGGGAGGGFGGGHGGGIGGG--GGLGG 120
           GAGGGFGGG GGG GGGLGGG GGGHGGGLGGG GGG GGG GGG GGG GGG  GG GG
Sbjct: 61  GAGGGFGGGVGGGHGGGLGGGVGGGHGGGLGGGIGGGHGGGIGGGAGGGAGGGLGGGHGG 120

Query: 121 GAGGGFGGGKGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGG 180
           G GGG GGG GGG GGGAGGGAGGG GGG GGG GGG GGG GGG GGG GGG GGG GG
Sbjct: 121 GIGGGVGGGHGGGIGGGAGGGAGGGLGGGHGGGIGGGVGGGHGGGLGGGAGGGLGGGHGG 180

Query: 181 GHGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGG 240
           G GGG GGG GGG GGGAGGG GGG GGGAGGGFGGG GGGAGGGFGGG GGGFGGG+GG
Sbjct: 181 GIGGGVGGGHGGGIGGGAGGGAGGGFGGGAGGGFGGGAGGGAGGGFGGGTGGGFGGGSGG 240

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BLAST of CmaCh14G015890 vs. TrEMBL
Match: A0A0D3A7Q1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 164/220 (74.55%), Postives = 173/220 (78.64%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGGGAGGGFGGGAGGGAG--GGLG 60
           M K++ ++G L L+L  LI+G AE R+LEKETLGGG   GAGGGFGGG GGG G  GG G
Sbjct: 1   MGKVSKRLGLLVLMLVLLIIGVAECRRLEKETLGGG---GAGGGFGGGKGGGGGLGGGAG 60

Query: 61  GGFGGGHGGGLGGGAGGGAGGGFGGGHGGGIGGG--GGLGGGAGGGFGGGKGGGFGGGAG 120
           GGFGGG GGG GGG GGG GGG GGG GGG+GGG  GG+GGG GGG GGGKGGG GGG G
Sbjct: 61  GGFGGGAGGGHGGGVGGGFGGGAGGGKGGGLGGGHGGGVGGGFGGGAGGGKGGGVGGGHG 120

Query: 121 GGAGGGFGGGAGG---GAGGGAGGGAGGGFGGGKGGGFGGGAGGGHGGGAGGGFGGGAGG 180
           GGAGGGFGGG GG   GAGGG GGGAGGG GGG GGGFGGGAGGGHGGGAGGGFGGGAGG
Sbjct: 121 GGAGGGFGGGVGGHGGGAGGGFGGGAGGGHGGGAGGGFGGGAGGGHGGGAGGGFGGGAGG 180

Query: 181 G----AGGGFGGGA------GGGAGGGFGGGHGGGAGGGF 204
           G    AGGGFGGGA      GGGAGGGFGGG GGG GGGF
Sbjct: 181 GHGGGAGGGFGGGAGGGHAGGGGAGGGFGGGAGGGGGGGF 217

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BLAST of CmaCh14G015890 vs. NCBI nr
Match: gi|727636183|ref|XP_010489199.1| (PREDICTED: glycine-rich cell wall structural protein-like isoform X2 [Camelina sativa])

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 194/264 (73.48%), Postives = 203/264 (76.89%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGL-------------------GGGA 60
           M K+++  G + L+L  L++G  E R+ EKETLGGG                    GGGA
Sbjct: 55  MGKVSF--GLVGLMLVVLVIGVVECRRFEKETLGGGGGGLGGGFGGGKGFGGGIGGGGGA 114

Query: 61  GGGFGGGAGGGAGGGLGGGFGGGHGGGLGGGAGGGAGGGFGGGHGGGIGG------GGGL 120
           GGGFGGG GGG GGGLGGG GGGHGGGLGGGAGGGAGGG GGGHGGGIGG      GGGL
Sbjct: 115 GGGFGGGIGGGHGGGLGGGIGGGHGGGLGGGAGGGAGGGLGGGHGGGIGGGAGGGSGGGL 174

Query: 121 GGGAGGGFGGGKGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGK--GGGFGG 180
           GGGAGGG GGG GGG GGGAGGGAGGG GGG GGG GGGAGGGAGGGFGGG   GGG GG
Sbjct: 175 GGGAGGGLGGGHGGGIGGGAGGGAGGGLGGGHGGGIGGGAGGGAGGGFGGGAGGGGGLGG 234

Query: 181 GAGGGHGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGG 238
           G GGG GGGAGGG GGG GGGAGGGFGGGAGGGAGGGFGGG GGG+GGGFGGG GGGFGG
Sbjct: 235 GHGGGFGGGAGGGSGGGLGGGAGGGFGGGAGGGAGGGFGGGAGGGSGGGFGGGSGGGFGG 294

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BLAST of CmaCh14G015890 vs. NCBI nr
Match: gi|727555329|ref|XP_010449832.1| (PREDICTED: glycine-rich cell wall structural protein-like [Camelina sativa])

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 184/242 (76.03%), Postives = 193/242 (79.75%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGG-LGGGAGGGFGGG--AGGGAGGGL 60
           M K++ ++G L L+L  LI+G AE R+LEKETLGGG  GGGAGGGFGGG   GGGAGGG 
Sbjct: 1   MGKVSRRLGFLGLMLVVLIIGVAECRRLEKETLGGGGFGGGAGGGFGGGKGGGGGAGGGA 60

Query: 61  GGGFGGGHGGGLGGGAGGGAGGGFGGGHGGGIGGGGGLGGGAGGGFGGGKGGGFGGGAGG 120
           GGGFGGGHGGG GGGAGGG G G           GGGLGGGAGGG GGG GGGFGGGAGG
Sbjct: 61  GGGFGGGHGGGFGGGAGGGHGAG----------AGGGLGGGAGGGHGGGAGGGFGGGAGG 120

Query: 121 GAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGGGHGGGAGGGFGGGAGGGAGG 180
           G G G GGG GGG  GG GGGAGGGFGGG GGG GGGAGGG GGGAGGG GGGAGGG GG
Sbjct: 121 GHGSGAGGGLGGG--GGHGGGAGGGFGGGAGGGHGGGAGGGFGGGAGGGHGGGAGGGFGG 180

Query: 181 GFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGGSGGGGGFGGGSGGGF 240
           G GGG GGGAGGGFGGG GGG GGGFGGG GGG GGGAGGGFGGG+GGGGG GGG+GGGF
Sbjct: 181 GAGGGHGGGAGGGFGGGAGGGHGGGFGGGAGGGHGGGAGGGFGGGAGGGGGHGGGAGGGF 230

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BLAST of CmaCh14G015890 vs. NCBI nr
Match: gi|778688510|ref|XP_011652766.1| (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 8.6e-13
Identity = 194/257 (75.49%), Postives = 199/257 (77.43%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGGGAG----GGFGGGAGGGAGGG 60
           MAKLT++ GALALV+A L+VG AESRKLEKETLGGGLGGG G    GG GGG G G GGG
Sbjct: 1   MAKLTFRNGALALVVALLVVGLAESRKLEKETLGGGLGGGGGLGGGGGLGGGGGLGGGGG 60

Query: 61  LGGGFGGGHGGGLGGGAGGGAGGGFGGGHG----------GGIGGGGGLGGGAGGGFGGG 120
           LGGG G G GGGLGGG G G GGG GGG G          GG+GGGGGLGGGAGGGFGGG
Sbjct: 61  LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGAGGGFGGG 120

Query: 121 KGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGGGHGGGAGGG 180
            GGG  GGAGGG GGG GGG GGG GGG GGG GGGFGGGKGGGFGGG GGG GGG GGG
Sbjct: 121 AGGG--GGAGGGVGGGSGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGG 180

Query: 181 FGGGAGGG----AGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGG 240
           FGGG GGG     GGGFGGG GGG GGG GGG GGG GGGFGGGKGGGFGGG GGGFGGG
Sbjct: 181 FGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGG 240

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BLAST of CmaCh14G015890 vs. NCBI nr
Match: gi|700202037|gb|KGN57170.1| (hypothetical protein Csa_3G166350 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 196/263 (74.52%), Postives = 201/263 (76.43%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGGGAG----GGFGGGAGGGAGGG 60
           MAKLT++ GALALV+A L+VG AESRKLEKETLGGGLGGG G    GG GGG G G GGG
Sbjct: 1   MAKLTFRNGALALVVALLVVGLAESRKLEKETLGGGLGGGGGLGGGGGLGGGGGLGGGGG 60

Query: 61  LGGGFGGGHGGGLGGGAGGGAGGGFGGGHG----------GGIGGGGGLGGGAGGGFGGG 120
           LGGG G G GGGLGGG G G GGG GGG G          GG+GGGGGLGGGAGGGFGGG
Sbjct: 61  LGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGAGGGFGGG 120

Query: 121 KGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGFGGGKGGGFGGGAGGGHGGGAGGG 180
            GGG  GGAGGG GGG GGG GGG GGG GGG GGGFGGGKGGGFGGG GGG GGG GGG
Sbjct: 121 AGGG--GGAGGGVGGGSGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGG 180

Query: 181 FGGGAGGG----AGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGAGGGFGGG 240
           FGGG GGG     GGGFGGG GGG GGG GGG GGG GGGFGGGKGGGFGGG GGGFGGG
Sbjct: 181 FGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGGKGGGFGGG 240

[Close]

BLAST of CmaCh14G015890 vs. NCBI nr
Match: gi|727636181|ref|XP_010489198.1| (PREDICTED: glycine-rich cell wall structural protein-like isoform X1 [Camelina sativa])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 194/276 (70.29%), Postives = 203/276 (73.55%), Query Frame = 1


Query: 1   MAKLTYKVGALALVLAFLIVGFAESRKLEKETLGGGLGG-------------------GA 60
           M K+++  G + L+L  L++G  E R+ EKETLGGG GG                   GA
Sbjct: 55  MGKVSF--GLVGLMLVVLVIGVVECRRFEKETLGGGGGGLGGGFGGGKGFGGGIGGGGGA 114

Query: 61  GGGFGGGAGGGAGGGLGGGFGGGHGGG------------LGGGAGGGAGGGFGGGHGGGI 120
           GGGFGGG GGG GGGLGGG GGGHGGG            LGGGAGGGAGGG GGGHGGGI
Sbjct: 115 GGGFGGGIGGGHGGGLGGGIGGGHGGGLGGGAGGGAGGGLGGGAGGGAGGGLGGGHGGGI 174

Query: 121 GGG------GGLGGGAGGGFGGGKGGGFGGGAGGGAGGGFGGGAGGGAGGGAGGGAGGGF 180
           GGG      GGLGGGAGGG GGG GGG GGGAGGGAGGG GGG GGG GGGAGGGAGGGF
Sbjct: 175 GGGAGGGSGGGLGGGAGGGLGGGHGGGIGGGAGGGAGGGLGGGHGGGIGGGAGGGAGGGF 234

Query: 181 GGGKGGG--FGGGAGGGHGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGHGGGAGG 238
           GGG GGG   GGG GGG GGGAGGG GGG GGGAGGGFGGGAGGGAGGGFGGG GGG+GG
Sbjct: 235 GGGAGGGGGLGGGHGGGFGGGAGGGSGGGLGGGAGGGFGGGAGGGAGGGFGGGAGGGSGG 294

The following BLAST results are available for this feature:

BLAST of CmaCh14G015890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP1_ARATH	2.0e-09	81.99	Glycine-rich cell wall structural protein OS=Arabidopsis thaliana GN=At3g17050 P...	[more]

BLAST of CmaCh14G015890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D7_CUCSA	7.9e-13	74.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G166350 PE=4 SV=1	[more]
M4E096_BRARP	3.9e-12	75.82	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A0D3BBQ2_BRAOL	5.6e-11	71.76	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D3CJF7_BRAOL	1.8e-09	70.83	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D3A7Q1_BRAOL	1.5e-08	74.55	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CmaCh14G015890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G015890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|727636183\|ref\|XP_010489199.1\|	3.2e-15	73.48	PREDICTED: glycine-rich cell wall structural protein-like isoform X2 [Camelina s...	[more]
gi\|727555329\|ref\|XP_010449832.1\|	3.9e-13	76.03	PREDICTED: glycine-rich cell wall structural protein-like [Camelina sativa]	[more]
gi\|778688510\|ref\|XP_011652766.1\|	8.6e-13	75.49	PREDICTED: glycine-rich cell wall structural protein-like [Cucumis sativus]	[more]
gi\|700202037\|gb\|KGN57170.1\|	1.1e-12	74.52	hypothetical protein Csa_3G166350 [Cucumis sativus]	[more]
gi\|727636181\|ref\|XP_010489198.1\|	1.5e-12	70.29	PREDICTED: glycine-rich cell wall structural protein-like isoform X1 [Camelina s...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G015890.1	CmaCh14G015890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G015890	Melon (DHL92) v3.6.1	cmamedB244
CmaCh14G015890	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G015890	Silver-seed gourd	carcmaB0391
CmaCh14G015890	Silver-seed gourd	carcmaB0984
CmaCh14G015890	Silver-seed gourd	carcmaB1304
CmaCh14G015890	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G015890	Watermelon (97103) v2	cmawmbB263
CmaCh14G015890	Watermelon (97103) v2	cmawmbB266
CmaCh14G015890	Wax gourd	cmawgoB0328
CmaCh14G015890	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G015890	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh14G015890	Cucurbita maxima (Rimu)	cmacmaB298
CmaCh14G015890	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G015890	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G015890	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G015890	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G015890	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G015890	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G015890	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G015890	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G015890	Watermelon (Charleston Gray)	cmawcgB236
CmaCh14G015890	Watermelon (97103) v1	cmawmB242
CmaCh14G015890	Watermelon (97103) v1	cmawmB250
CmaCh14G015890	Cucurbita pepo (Zucchini)	cmacpeB270
CmaCh14G015890	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G015890	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G015890	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G015890	Bottle gourd (USVL1VR-Ls)	cmalsiB246
CmaCh14G015890	Cucumber (Gy14) v2	cgybcmaB318