CmaCh14G013230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G013230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPpabcg17
LocationCma_Chr14 : 10372507 .. 10374129 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCACACGACAGTTCTTCCAGTATCGACCGTGTTTCGAACGGTTCGCATGACGATCGCTGCAGCTCTTGCATCAAGCCCTGAGGTTGGCTCATCCATGAATATTATGGATGGATTTGCTACAAGCTCCACTGCTATTGTGAGTCGCTTACGCTGCTCGGACGACAGACCGTTTTCGCCTGGCAATCCAACTAGAGCATCCCTCAATGTCTTCAATTCCACAAGCTCCATCACTTCTTCAATGAACATCTGTTTTGTTCACAACAAGTTGCATACATTTGATGAACAACACAGTTAAGAAAGTATGTAATAGTTTAAGTTCAATCACCTTTCTAGTTTCGGTATCGACTTCACGAGGTAAACGGAGCCATGCCGAGTAGAGCAAGGATTCGTAGACGGTAACATGAGGAGAATGGATGTCATTTTGTTCACAATAACCTGAGATTCTAGCAAATGTTTCTTGCTTCTTTGGATAACCAGATATTTTGATGCTTCCTTCAATGTAACCGCCTGTTTTTCTACCAGCCAAGACATCCATTAGTGTTGTCTTACCAGCACCACTCACTCCCATAAGAGCTGTTAAAACACCTGGCCTGAATGCCCCACTTATACCCTTCAGTAGCACCAATTTTTCTTCTACAATACCTTGATTTTTCATCCCCTGGAAAACCCCATTTCAGATCATTAGGATGAACATATTATAAGCTTAATATAGTCGCTAAATGGGCCCGTTGTTAGTAGATATGGTCCGTTTTAGCCCGTTACAAATAACATCAGAGTCAGGCACCGAGCGGTGTGCTAGTTAGGATGCTGGCCTCAAGGGGTGGATTGTGAGATCCCATATCGGTTGGAGAGAGGAACAAAACATTCCTTATAAAGATGTGGAAACCTCTTCCTAGCAGACGTGTTTTAAAACCCCGAGGGAAAGCCCAGAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCACTGAGCTTGGAGTGTTACAAATGGTATCAGAGCCAGACACGGGGCGGTGTGCTAGCGAGGACGTTGGGCTCCCAAGGGGGGTAGATTGTGAGATCTCACATCGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAAACTCTTCCTAGTAGATGCGTTTTAAAGTCGTGAGGCTGACAACGTTACGTAACGGGCTAAAGCGGACAATATCTGTAGCGGTGAGCTTAGACTTGGGCTGTTATACTAAAATTACCTGGGGCATGTCAACAGAGTATGTGATATTTTCAAATGCGATTGAATGTTGCTCAAATGGAAGAATCATTCCTGTTCTACTTTGGGCATTGGCTTGTAAACCCATTTCAGTATTGGAAACTGAGGCCCCTGAATTAGCAGGACGCCGAGCAATTGAGTATCAGCACAAACTTCCTATTGAACTATTACAACTTTTTTAGTACCTCTTTTGTCAATGTCTTCTGGTTCCCCTGATTTAACAGCTTGGCCCTTCCCAAATGCTGCAAAACCAATTCTAAGATGTTAATCTGAAGCTCTTAGATATACATTTGATAAAGCTGTATTGAGGTCGAGATCGTTACGGTCGAGCAACGACAATGCGACAGTGAACAAGAAGTTGAACAAAAACGTATAG

mRNA sequence

ATGGTGCACACGACAGTTCTTCCAGTATCGACCGTGTTTCGAACGGTTCGCATGACGATCGCTGCAGCTCTTGCATCAAGCCCTGAGGTTGGCTCATCCATGAATATTATGGATGGATTTGCTACAAGCTCCACTGCTATTGTGAGTCGCTTACGCTGCTCGGACGACAGACCGTTTTCGCCTGGCAATCCAACTAGAGCATCCCTCAATTTTCGGTATCGACTTCACGAGGTAAACGGAGCCATGCCGAGTAGAGCAAGGATTCGTAGACGATATACATTTGATAAAGCTGTATTGAGGTCGAGATCGTTACGGTCGAGCAACGACAATGCGACAGTGAACAAGAAGTTGAACAAAAACGTATAG

Coding sequence (CDS)

ATGGTGCACACGACAGTTCTTCCAGTATCGACCGTGTTTCGAACGGTTCGCATGACGATCGCTGCAGCTCTTGCATCAAGCCCTGAGGTTGGCTCATCCATGAATATTATGGATGGATTTGCTACAAGCTCCACTGCTATTGTGAGTCGCTTACGCTGCTCGGACGACAGACCGTTTTCGCCTGGCAATCCAACTAGAGCATCCCTCAATTTTCGGTATCGACTTCACGAGGTAAACGGAGCCATGCCGAGTAGAGCAAGGATTCGTAGACGATATACATTTGATAAAGCTGTATTGAGGTCGAGATCGTTACGGTCGAGCAACGACAATGCGACAGTGAACAAGAAGTTGAACAAAAACGTATAG

Protein sequence

MVHTTVLPVSTVFRTVRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFSPGNPTRASLNFRYRLHEVNGAMPSRARIRRRYTFDKAVLRSRSLRSSNDNATVNKKLNKNV
Homology
[Close]
BLAST of CmaCh14G013230 vs. TrEMBL
Match: A0A0A9GSN4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-16
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 1 

Query: 1  MVHTTVLPVSTVFRTVRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFS 60
          MV TTVLPV TVF TV +TIAAA AS PEVGSS+ +++G ATSSTAIVS LRCS DRPF+
Sbjct: 1  MVQTTVLPVLTVFLTVLITIAAARASRPEVGSSIKMIEGLATSSTAIVSLLRCSVDRPFT 60

Query: 61 PGNPTRASLN 71
          PG+PT A LN
Sbjct: 61 PGSPTSAPLN 70

[Close]
BLAST of CmaCh14G013230 vs. TrEMBL
Match: A0A0A9CPM7_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 1 

Query: 1  MVHTTVLPVSTVFRTVRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFS 60
          MVHTTVLP ST FRTV +TIAAA ASSPEVGSSM +M G ATSSTA+VS LRCS +RPF+
Sbjct: 1  MVHTTVLPASTRFRTVLITIAAARASSPEVGSSMKMMVGLATSSTAMVSLLRCSLERPFT 60

Query: 61 PGNPTRASLN 71
          P  PT A  N
Sbjct: 61 PACPTSAPCN 70

[Close]
BLAST of CmaCh14G013230 vs. TrEMBL
Match: A0A0A9C7A4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 1  MVHTTVLPVSTVFRTVRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFS 60
          MV TTVLPVSTVF    MT+AAA ASSP+VGSSM +M+G ATSSTAIVS   CS D P +
Sbjct: 1  MVQTTVLPVSTVFLIALMTMAAARASSPDVGSSMKMMEGLATSSTAIVSLFLCSVDNPLT 60

Query: 61 PGNPTRAS 69
          PGNPT AS
Sbjct: 61 PGNPTNAS 68

[Close]
BLAST of CmaCh14G013230 vs. TrEMBL
Match: A0A0A9JC22_ARUDO (Similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 1  MVHTTVLPVSTVFRTVRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFS 60
          +V TTV PVSTVFRTV MTIAAALAS P+VGSSM +++G ATSSTAIVS   CS D P  
Sbjct: 8  IVQTTVRPVSTVFRTVLMTIAAALASRPDVGSSMKMIEGLATSSTAIVSLFLCSVDSPVI 67

Query: 61 PGNPTRAS 69
          PG PT+AS
Sbjct: 68 PGRPTKAS 75

[Close]
BLAST of CmaCh14G013230 vs. TrEMBL
Match: A0A0A9IW72_ARUDO (PDR8 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-14
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1 

Query: 1  MVHTTVLPVSTVFRTVRMTIAAALASSPEVGSSMNIMDGFATSSTAIVSRLRCSDDRPFS 60
          +V TTV PVSTVFRTV MTIAAALAS P+VGSSM ++DG ATSSTAIV+   CS + P  
Sbjct: 8  IVQTTVRPVSTVFRTVLMTIAAALASRPDVGSSMKMIDGLATSSTAIVNLFLCSVESPVI 67

Query: 61 PGNPTRAS 69
          PG+PT+AS
Sbjct: 68 PGSPTKAS 75

The following BLAST results are available for this feature:
BLAST of CmaCh14G013230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G013230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9GSN4_ARUDO5.2e-1672.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9CPM7_ARUDO2.0e-1572.86Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9C7A4_ARUDO2.2e-1470.59Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9JC22_ARUDO3.7e-1470.59Similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) OS=Arundo donax PE=4 SV=1[more]
A0A0A9IW72_ARUDO6.3e-1469.12PDR8 OS=Arundo donax PE=4 SV=1[more]
BLAST of CmaCh14G013230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G013230 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G013230.1CmaCh14G013230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G013230Wax gourdcmawgoB0316
CmaCh14G013230Cucurbita maxima (Rimu)cmacmaB095
CmaCh14G013230Cucurbita maxima (Rimu)cmacmaB254
CmaCh14G013230Cucurbita maxima (Rimu)cmacmaB277
CmaCh14G013230Cucurbita moschata (Rifu)cmacmoB245
CmaCh14G013230Cucurbita moschata (Rifu)cmacmoB249
CmaCh14G013230Cucurbita moschata (Rifu)cmacmoB256
CmaCh14G013230Cucurbita moschata (Rifu)cmacmoB280
CmaCh14G013230Wild cucumber (PI 183967)cmacpiB279
CmaCh14G013230Cucumber (Chinese Long) v2cmacuB275
CmaCh14G013230Melon (DHL92) v3.5.1cmameB221
CmaCh14G013230Melon (DHL92) v3.5.1cmameB230
CmaCh14G013230Watermelon (Charleston Gray)cmawcgB216
CmaCh14G013230Watermelon (Charleston Gray)cmawcgB242
CmaCh14G013230Watermelon (97103) v1cmawmB220
CmaCh14G013230Watermelon (97103) v1cmawmB232
CmaCh14G013230Cucurbita pepo (Zucchini)cmacpeB267
CmaCh14G013230Cucurbita pepo (Zucchini)cmacpeB282
CmaCh14G013230Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G013230Bottle gourd (USVL1VR-Ls)cmalsiB238
CmaCh14G013230Bottle gourd (USVL1VR-Ls)cmalsiB256
CmaCh14G013230Cucumber (Gy14) v2cgybcmaB915
CmaCh14G013230Melon (DHL92) v3.6.1cmamedB250
CmaCh14G013230Melon (DHL92) v3.6.1cmamedB261
CmaCh14G013230Silver-seed gourdcarcmaB0154
CmaCh14G013230Silver-seed gourdcarcmaB0276
CmaCh14G013230Silver-seed gourdcarcmaB1043
CmaCh14G013230Silver-seed gourdcarcmaB1418
CmaCh14G013230Cucumber (Chinese Long) v3cmacucB0322
CmaCh14G013230Watermelon (97103) v2cmawmbB275
CmaCh14G013230Watermelon (97103) v2cmawmbB281