CmaCh14G011550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G011550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr14 : 9136554 .. 9137067 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTGAGCGCATCCATAGTGAAGTTAGCATTTGGATTCATTGTCTGCATAGTCATTTTAGCACAATCAATAATGGCGGCAGCACCTGGTCCATCTTTTCCTTCCGATTTATATCTTTCTGATTGTAAATCTTTTATTATAGAGGCGGCAACATGTATGGTAAATGTGATCAAGCTTCAAACTGGTGATCATCCTCCTTGTTGCAAAGCTATTTCTCATTTGAACGAATGTTCACCGGAAGTTTTCAAACATATTCCCCCGGATGACTTAGCTGCCATTAAAAAAACTTGTGATTTGAACCATTTCTTAAATATTTTCAACTCCTTACTCAAGGCGCTAAAAATGTCTAAGAGAGGAAAAGAGGTAAATTTTGATTTATGAAAACAAAAACAATACTTTGTCAATTTTTCTTTTACAGGTTTATTATTGGTGTCTATTTATTCTCTTCCTTCTCTACTTGGAGTTCAAGAAATTTCCAGCAACTTACTTACCTCTACCAATAATAATATAA

mRNA sequence

ATGGCATTGAGCGCATCCATAGTGAAGTTAGCATTTGGATTCATTGTCTGCATAGTCATTTTAGCACAATCAATAATGGCGGCAGCACCTGAGGCGGCAACATGTATGGTAAATGTGATCAAGCTTCAAACTGGTGATCATCCTCCTTGTTGCAAAGCTATTTCTCATTTGAACGAATGTTCACCGGAAGTTTTCAAACATATTCCCCCGGATGACTTAGCTGCCATTAAAAAAACTTGTGATTTGAACCATTTCTTAAATATTTTCAACTCCTTACTCAAGGCGCTAAAAATGTCTAAGAGAGGAAAAGAGGTTTATTATTGGTGTCTATTTATTCTCTTCCTTCTCTACTTGGAGTTCAAGAAATTTCCAGCAACTTACTTACCTCTACCAATAATAATATAA

Coding sequence (CDS)

ATGGCATTGAGCGCATCCATAGTGAAGTTAGCATTTGGATTCATTGTCTGCATAGTCATTTTAGCACAATCAATAATGGCGGCAGCACCTGAGGCGGCAACATGTATGGTAAATGTGATCAAGCTTCAAACTGGTGATCATCCTCCTTGTTGCAAAGCTATTTCTCATTTGAACGAATGTTCACCGGAAGTTTTCAAACATATTCCCCCGGATGACTTAGCTGCCATTAAAAAAACTTGTGATTTGAACCATTTCTTAAATATTTTCAACTCCTTACTCAAGGCGCTAAAAATGTCTAAGAGAGGAAAAGAGGTTTATTATTGGTGTCTATTTATTCTCTTCCTTCTCTACTTGGAGTTCAAGAAATTTCCAGCAACTTACTTACCTCTACCAATAATAATATAA

Protein sequence

MALSASIVKLAFGFIVCIVILAQSIMAAAPEAATCMVNVIKLQTGDHPPCCKAISHLNECSPEVFKHIPPDDLAAIKKTCDLNHFLNIFNSLLKALKMSKRGKEVYYWCLFILFLLYLEFKKFPATYLPLPIII

Homology

[Close]

BLAST of CmaCh14G011550 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 4   SASIVKLAFGFIVCIVILAQSI----MAAAP----------------------EAATCMV 63
           SAS ++LA  F+VCIVILA S+    MA AP                      EA  C+V
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 67

Query: 64  NVIKLQTGDHPPCCKAISHLNECSPEVFKHIPPDDLAAIKKTCDL 83
           +VIKL    HP CCKAIS LN+C+P++++HIP  D+  IKK C L
Sbjct: 68  DVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]

BLAST of CmaCh14G011550 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1


Query: 8   VKLAFGFIVCIVILAQSIMAAAP---------------------EAATCMVNVIKLQTGD 67
           +KL   F+VCI ILA  +M                         EA  CM++V+K     
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPP 64

Query: 68  HPPCCKAISHLNECSPEVFKHIPPDDLAAIKKTCDL 83
           HP CC+AI  LN+C+PEV+K +P  D   IKK C+L
Sbjct: 65  HPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

[Close]

BLAST of CmaCh14G011550 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 4   SASIVKLAFGFIVCIVILAQSI----MAAAP----------------------EAATCMV 63
           SAS ++LA  F+VCIVILA S+    MA AP                      EA  C+V
Sbjct: 8   SASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVV 67

Query: 64  NVIKLQTGDHPPCCKAISHLNECSPEVFKHIPPDDLAAIKKTCDL 83
           +VIKL    HP CCKAIS LN+C+P++++HIP  D+  IKK C L
Sbjct: 68  DVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]

BLAST of CmaCh14G011550 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1


Query: 8   VKLAFGFIVCIVILAQSIMAAAP---------------------EAATCMVNVIKLQTGD 67
           +KL   F+VCI ILA  +M                         EA  CM++V+K     
Sbjct: 5   LKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPP 64

Query: 68  HPPCCKAISHLNECSPEVFKHIPPDDLAAIKKTCDL 83
           HP CC+AI  LN+C+PEV+K +P  D   IKK C+L
Sbjct: 65  HPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:

BLAST of CmaCh14G011550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G011550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTD6_CUCSA	1.9e-11	44.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1	[more]
A0A0A0LTE1_CUCSA	2.2e-07	37.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1	[more]

BLAST of CmaCh14G011550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G011550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210094\|gb\|KGN65190.1\|	2.7e-11	44.76	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]
gi\|700210099\|gb\|KGN65195.1\|	3.1e-07	37.50	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G011550.1	CmaCh14G011550.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G011550	Bottle gourd (USVL1VR-Ls)	cmalsiB257
CmaCh14G011550	Cucumber (Gy14) v2	cgybcmaB487
CmaCh14G011550	Melon (DHL92) v3.6.1	cmamedB245
CmaCh14G011550	Melon (DHL92) v3.6.1	cmamedB280
CmaCh14G011550	Silver-seed gourd	carcmaB0980
CmaCh14G011550	Cucumber (Chinese Long) v3	cmacucB0300
CmaCh14G011550	Watermelon (97103) v2	cmawmbB276
CmaCh14G011550	Wax gourd	cmawgoB0321
CmaCh14G011550	Wax gourd	cmawgoB0357
CmaCh14G011550	Cucurbita maxima (Rimu)	cmacmaB256
CmaCh14G011550	Cucumber (Gy14) v1	cgycmaB0494
CmaCh14G011550	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G011550	Cucurbita moschata (Rifu)	cmacmoB258
CmaCh14G011550	Wild cucumber (PI 183967)	cmacpiB265
CmaCh14G011550	Cucumber (Chinese Long) v2	cmacuB262
CmaCh14G011550	Melon (DHL92) v3.5.1	cmameB246
CmaCh14G011550	Watermelon (Charleston Gray)	cmawcgB243
CmaCh14G011550	Watermelon (97103) v1	cmawmB233
CmaCh14G011550	Cucurbita pepo (Zucchini)	cmacpeB280
CmaCh14G011550	Cucurbita pepo (Zucchini)	cmacpeB283