CmaCh14G010950 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCATCTTCAAATCAAATGTCTATGGAAATATGTTACCAGTTCTATGTGGTTCAGTCCTTTAGCCTTTCATTCATGAAACTGAGTTTAACATGTTTCAATTTGTTTTTGGCGGGTCTGGTAATTCCTGAACTATCTTGTCCAGTTTGCCTTTTTTCGTATTACAACCCTATTCTTAAACGTGGCATTGAGAACTTCATGATGACAATTAGAGATGCTGGTGTACGAGGTAATTCCTAAATTTCCAGATTTGATATTTGGAACAATTCCTTGTTTCGTATGGGACGTTTAGTGTACGGGTTCAATGTCTTAAGCATGGAAGTGTAGTGGAGGGTCAAAACTTGTGTTTAGGTGCGGTTTTATAGGAAGCTAAAATTGAGGCAAACATGTGTGTAGGTTTCATGAGCCCAAGTCTAGGAAAACTATGTTTAGGGGTCAAGTTTTAGTAGTCTAGAAATTAGGACCATGAATTTAGGAAAATTGTGTTTGGGGTATATGTTTTAGAAGCTAGAGAATATGAAATGCAATGTGAGTTTTGGTTAGAGTTGTAACAGCCCAAGCTCAAGCCCACCGCTAGCAGATATTGTCCGCTTTGGCCCATTACGTATCGCTCCGTTAGCCTCACAGTTTTAAAACGTGTCTATTAGGGAGAGGTTTCCACACCCTTATTAGGAATTTTTCGTTCCCCTCTCTAACCGATGTGAGGTCTCACAATCCACCCTTCTTGATGGCCCAGCGGCCTCGTTGGCTAGCTCTGATACCATTTGTAACAGCTTAACCTCATCGCTAGTAGATATTTTCTGCTTTGGCCCGTTACGTATCGCTCTTAGCCTCACGGTTTTAAAATGCGTCTGTTAAGGAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTTCCCCTCTCTAACTGATGTGGGATCTTACAAGAGTACTAGTTGATTTAAGGATGGGAAAACAAAGGAAGAGAGAGAAAGAAGGGAAAATGAGGGGTTGGGGTTTGGGGGGACAAAAGGAGCGTTACGTTGAGGAAAGGAGGGAGAAGCGGGGATGGGTAACTATTTATGAAGTTTTGGGCATTCAAGTTTAGGGTCAGGTTACTGGTTGGGTTGCAGCGGCCTGAGCAAGAGGCTTCTACTCAAGCCTGTTCCCGTCAACATGTGTTGGACTTAAACTCATTCTAAGCTCAACCCCCTCTATGAGCAATAAATGGGCAAACACGTTGGAACATTATATGTGTCTATTTCGATTCACCATTAATCATTGAACTATAGTCAATCAGCTACATGATTGTTATTCAAGAGCCTATAATATAACGGTTGAAAAGAATATGTCAATACTCCTAATATTAGGTGGGTAGGGATGTTTGAATTCTTTATAAAATGGGAATATTGCATTTAAAGCTGTACAGAGTATTGCATGAGTTGTTAGTATATTATTACGTGTTGCCAAACAAGCATGACTCAATGGATAAATTATCATCCCAAAGGTCGATGGTTCAACCCCCACCCTAACAATCGTTGAACTTAAAATATATATTTATGTGTTAAGTATAGAATCTTAACTTAGATTTTCTTGGTTTACAAAGTTCTATGGAAAATGTGTAACCTTTCTCAACCTTGGGTTTTCTGAACATGTTTGTGGTCATATTGCACTTTCTTGCAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGCAGTTTTGAGAGAGGAAGCTGTGAACTGGTGATATTTTTTCTCATAATGGTTTTATAGATTTTGTAAATCATTTTCTAGGTTTTTTGGTTTTGATATTTATGTAGTAGGACTTAAACGAGCTTTCATAAAGCAATACTAAACAAAAGGTCCCTTGAGCGCCGAGCCAAGCCTTTTCCGCCCGCTTTCCATCTCGCGTTTCCCTGCTTGAGACCATTTTTTATTAGCCCAGTCATGAACCACCCTGGTTAGAGCCATGGTTAACTACTTTACTTACTTGGGGTTCTTTCTCGTAAGTGGTATACCTACACGCTTCATTGTTTTCCAAGAAGATTAGATCATTAAAAAAAGGAAGTTTGCTGGGGTGTACTTTTTGCTTCATTTCAAAGGATATTTTATCAAGCCAAGAGAGAGATGGGGACTCTCTTCTCTAGACCTCTGGAACATTGCCTAGCGTATGAAACATTCCCTGGTTCTTGATAACTGCTTCATTGGAGTGGTAAAGATTAATTTTATTATAGTTAAATTACAAATTTAGACTTTGACATTTATGTCTATTTGGTCCTCGAACTTTTACAATTACAAATTTAGTCCTTAAACTTCTGAATTTTTTAAAATTCTTGGATCTACTTGACACAAAATCAAAAGTTTACGGTTTCATTAGACATTAAATTGGAATATATATATAAATAGAGAGAGAGAGAGAATAGATGTGACACCCGAGTAAAGGAGGAATACATGAATGAACCGAGACCACATTTGAATGAGAGTGATCCTGATGATAGAATTCTTGAGAAAAATTTAAAAGAATAAAAGTTACTATCTATACGAGCAAGTAGCGGCTCAATCATAGGACCTCAAAGTGAAGCGTGCTTTACTTGAAACAATTCTAGTTGGGTGACCTCCTAGGAATTTTCCTAAGAAGCATGTGAATGAGAACAAAACATGCTTAAAGGACCCGTGTTGGTTTGTGGGAATAGTAGTATTCACTCTTTAAAACGACAAACAGGTAATGTGGTCATGTCGTAGGGGATATAGGGGGAATGCTAGAGCAATAAGGTATCGAATCCATATTTCAAGTCTTTATCTGAATCTTGGGCATAGGGCAATGAATTTTTAAAAATTTTGTATTTTCAAGGACTTATTGGGAGCGGAAATGAGAATAAGCTTTGTTAATCACATGAATGATTAGCTGCTAATGCAGAAAACAGTTGCCTTGAATGCTAGAAATTAATTATATGAATCGATCGTTCAACTATACTAACCTGCATCCTTTTTCTATTGTCTCTAGGAGTAGAACCAACTTAATAAGGAAACTTATAGCCAATCCCTTGACTCATTCTTGTTATATTCACTTTTTCTATAAGATAATCGCTCGTTTAACCTTGAGTTGATTGCTTGTTCTTATTTATTTTATGTTGTTCTTTTACATTGCTAAAGGTACTCTTAA ATGGCATCTTCAAATCAAATGTCTATGGAAATATGTTACCAGTTCTATGTGGTTCAGTCCTTTAGCCTTTCATTCATGAAACTGAGTTTAACATGTTTCAATTTGTTTTTGGCGGGTCTGGTAATTCCTGAACTATCTTGTCCAGTTTGCCTTTTTTCGTATTACAACCCTATTCTTAAACGTGGCATTGAGAACTTCATGATGACAATTAGAGATGCTGGTGTACGAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGCAGTTTTGAGAGAGGAAGCTGTGAACTGGTACTCTTAA ATGGCATCTTCAAATCAAATGTCTATGGAAATATGTTACCAGTTCTATGTGGTTCAGTCCTTTAGCCTTTCATTCATGAAACTGAGTTTAACATGTTTCAATTTGTTTTTGGCGGGTCTGGTAATTCCTGAACTATCTTGTCCAGTTTGCCTTTTTTCGTATTACAACCCTATTCTTAAACGTGGCATTGAGAACTTCATGATGACAATTAGAGATGCTGGTGTACGAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGCAGTTTTGAGAGAGGAAGCTGTGAACTGGTACTCTTAA MASSNQMSMEICYQFYVVQSFSLSFMKLSLTCFNLFLAGLVIPELSCPVCLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLEETAVLREEAVNWYS
BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA1_ARATH (Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2) HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17 Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA2_ARATH (Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 1.5e-17 Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1
BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 6.4e-13 Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11 Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
BLAST of CmaCh14G010950 vs. Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 4.6e-11 Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A0A0LKV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G225330 PE=3 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19 Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A068TWH9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032664001 PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18 Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A0A0LD81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843770 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18 Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TrEMBL
Match: A0A0K9QXB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137970 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 7.8e-18 Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TrEMBL
Match: Q1ERH3_9MAGN (Tryptophan synthase alpha subunit (Fragment) OS=Magnolia praecocissima GN=MpTSA PE=2 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 7.8e-18 Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TAIR10
Match: AT4G02610.1 (AT4G02610.1 Aldolase-type TIM barrel family protein) HSP 1 Score: 90.5 bits (223), Expect = 6.3e-19 Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
BLAST of CmaCh14G010950 vs. TAIR10
Match: AT3G54640.1 (AT3G54640.1 tryptophan synthase alpha chain) HSP 1 Score: 90.1 bits (222), Expect = 8.2e-19 Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1
BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|449455268|ref|XP_004145375.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis sativus]) HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19 Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1
BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|778669016|ref|XP_011649182.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X2 [Cucumis sativus]) HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19 Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1
BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|659130730|ref|XP_008465320.1| (PREDICTED: tryptophan synthase alpha chain-like [Cucumis melo]) HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19 Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1
BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|659096914|ref|XP_008449353.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X2 [Cucumis melo]) HSP 1 Score: 102.4 bits (254), Expect = 4.5e-19 Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 1
BLAST of CmaCh14G010950 vs. NCBI nr
Match: gi|659096912|ref|XP_008449352.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo]) HSP 1 Score: 102.4 bits (254), Expect = 4.5e-19 Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |