CmaCh14G010850 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G010850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase subunit beta'
Location	Cma_Chr14 : 7274522 .. 7275080 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCGGATATTAATGAACTCTATAGAAGGATTATCTATTGGAACAATACTCTTATTGATTTAGAGAAACTCTCCTTGGAAAACGGGTCGATTGTCATTATATGGGAAATACTTCAGTCCCTCACTTTCATTATATCGATGTGGATTGACTCGTGAAATCGCTATAGAGCTTTTCCAGACATTTTTAATTTGTGGTCTAATTCGACAACATTTTGTTTCGAACATAGGAGTTGCGAAGAGTAAAATTCGGGAATAAGAACCCAGTATATGGGAAAATTCAAGAAAAAGAACCCCATTATATGGGAAATACTTCAGTCCCTCACTTTCATTATATCGATGTGGATTGACTCGTGAAATCGCTATAGAGCTTTTCCAGACATTTTTAATTTGTGGTCTAATTCGACAACATTTTGTTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGATAAAGAACCCATTATATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCACCCATTTTGCAAGGGCATTCAGATAGATGGGGGTAA

mRNA sequence

ATGAGCTCGGATATTAATGAACTCTATAGAAGGATTATCTATTGGAACAATACTCTTATTGATTTAGAGAAACTCTCCTTGGAAAACGGGTCGATTGTCATTATATGGGAAATACTTCAGTCCCTCACTTTCATTATATCGATGTGGATTGACTCTATATGGGAAAATTCAAGAAAAAGAACCCCATTATATGGGAAATACTTCAGTCCCTCACTTTCATTATATCGATGTGGATTGACTCGTGAAATCGCTATAGAGCTTTTCCAGACATTTTTAATTTGTGGTCTAATTCGACAACATTTTGTTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGATAAAGAACCCATTATATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCACCCATTTTGCAAGGGCATTCAGATAGATGGGGGTAA

Coding sequence (CDS)

ATGAGCTCGGATATTAATGAACTCTATAGAAGGATTATCTATTGGAACAATACTCTTATTGATTTAGAGAAACTCTCCTTGGAAAACGGGTCGATTGTCATTATATGGGAAATACTTCAGTCCCTCACTTTCATTATATCGATGTGGATTGACTCTATATGGGAAAATTCAAGAAAAAGAACCCCATTATATGGGAAATACTTCAGTCCCTCACTTTCATTATATCGATGTGGATTGACTCGTGAAATCGCTATAGAGCTTTTCCAGACATTTTTAATTTGTGGTCTAATTCGACAACATTTTGTTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGATAAAGAACCCATTATATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCACCCATTTTGCAAGGGCATTCAGATAGATGGGGGTAA

Protein sequence

MSSDINELYRRIIYWNNTLIDLEKLSLENGSIVIIWEILQSLTFIISMWIDSIWENSRKRTPLYGKYFSPSLSLYRCGLTREIAIELFQTFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPILQGHSDRWG

Homology

[Close]

BLAST of CmaCh14G010850 vs. Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 9.3e-37
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. Swiss-Prot
Match: RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-36
Identity = 93/171 (54.39%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 290 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 349

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 350 GHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 409

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIR+HF SNIG+AKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 410 TFLIRGLIRKHFASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 460

[Close]

BLAST of CmaCh14G010850 vs. Swiss-Prot
Match: RPOC1_CITSI (DNA-directed RNA polymerase subunit beta' OS=Citrus sinensis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-36
Identity = 94/171 (54.97%), Postives = 110/171 (64.33%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + I+++          R R  L GK             PSLSL++CGL REIAIELFQ
Sbjct: 348 GHNKIYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TF+ICGLIRQH  SNIGVAKSKIR+K PIIWEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFVICGLIRQHLASNIGVAKSKIREKGPIIWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. Swiss-Prot
Match: RPOC1_MORIN (DNA-directed RNA polymerase subunit beta' OS=Morus indica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.1e-36
Identity = 93/171 (54.39%), Postives = 108/171 (63.16%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIV-----IIWEILQSL------------ 60
           MSSDINELYRR+IY NNTLIDL   S    G +V     ++ E + +L            
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRD 347

Query: 61  --TFIISMWIDSI-WENSRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
               +   + D I  +  R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TF+I GLIRQHF SNIGVAKSKIR+KEP++WEILQ+VMQGHPVLLNRAP L
Sbjct: 408 TFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQDVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. Swiss-Prot
Match: RPOC1_ACOCL (DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-35
Identity = 92/171 (53.80%), Postives = 110/171 (64.33%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTL DL K S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLTDLLKTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TF+I GLIRQH  SNIG+AKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFVIRGLIRQHLASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. TrEMBL
Match: X2FAC8_LAGSI (DNA-directed RNA polymerase subunit (Fragment) OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 286 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 345

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 346 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 405

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 406 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 456

[Close]

BLAST of CmaCh14G010850 vs. TrEMBL
Match: X2F3X8_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. TrEMBL
Match: X2F0N3_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. TrEMBL
Match: X2F7V3_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. TrEMBL
Match: W8E6U8_9ROSI (DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 289 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 348

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 349 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 408

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 409 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 459

[Close]

BLAST of CmaCh14G010850 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-35
Identity = 90/171 (52.63%), Postives = 109/171 (63.74%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTL DL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TF+I GLIRQH  SNIGVAKS+IR+K+PI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. NCBI nr
Match: gi|74027092|gb|AAZ94642.1| (RNA polymerase beta I subunit [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 295 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 354

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 355 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 414

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 415 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 465

[Close]

BLAST of CmaCh14G010850 vs. NCBI nr
Match: gi|590000406|ref|YP_009004035.1| (RNA polymerase beta [Cucumis hystrix])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 289 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 348

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 349 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 408

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 409 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 459

[Close]

BLAST of CmaCh14G010850 vs. NCBI nr
Match: gi|595645395|gb|AHM88855.1| (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

[Close]

BLAST of CmaCh14G010850 vs. NCBI nr
Match: gi|67511389|emb|CAJ00749.1| (RNA polymerase beta chain (chloroplast) [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 295 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 354

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 355 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 414

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 415 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 465

[Close]

BLAST of CmaCh14G010850 vs. NCBI nr
Match: gi|346578182|ref|YP_004841774.1| (RNA polymerase beta [Cucumis melo subsp. melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1


Query: 1   MSSDINELYRRIIYWNNTLIDLEKLSLEN-GSIVIIWEIL--QSLTFIISMWI------- 60
           MSSDINELYRR+IY NNTLIDL   S    G +V+  E L  +++  ++   I       
Sbjct: 288 MSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRD 347

Query: 61  --DSIWEN---------SRKRTPLYGK----------YFSPSLSLYRCGLTREIAIELFQ 120
             + ++++          R R  L GK             PSLSL+RCGL REIAIELFQ
Sbjct: 348 GHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ 407

Query: 121 TFLICGLIRQHFVSNIGVAKSKIRDKEPIIWEILQEVMQGHPVLLNRAPIL 141
           TFLI GLIRQHF SNIGVAKSKIR+KEPI+WEILQEVMQGHPVLLNRAP L
Sbjct: 408 TFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 458

The following BLAST results are available for this feature:

BLAST of CmaCh14G010850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC1_CUCSA	9.3e-37	55.56	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3	[more]
RPOC1_SOYBN	3.6e-36	54.39	DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2	[more]
RPOC1_CITSI	4.6e-36	54.97	DNA-directed RNA polymerase subunit beta' OS=Citrus sinensis GN=rpoC1 PE=3 SV=1	[more]
RPOC1_MORIN	6.1e-36	54.39	DNA-directed RNA polymerase subunit beta' OS=Morus indica GN=rpoC1 PE=3 SV=1	[more]
RPOC1_ACOCL	1.0e-35	53.80	DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1	[more]

BLAST of CmaCh14G010850 vs. TrEMBL


Match Name	E-value	Identity	Description
X2FAC8_LAGSI	1.0e-34	55.56	DNA-directed RNA polymerase subunit (Fragment) OS=Lagenaria siceraria GN=rpoC1 P...	[more]
X2F3X8_LAGSI	1.0e-34	55.56	DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1	[more]
X2F0N3_LAGSI	1.0e-34	55.56	DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1	[more]
X2F7V3_LAGSI	1.0e-34	55.56	DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1	[more]
W8E6U8_9ROSI	1.0e-34	55.56	DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC1 PE=3 SV=1	[more]

BLAST of CmaCh14G010850 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00180.1	1.9e-35	52.63	ATCG00180.1 DNA-directed RNA polymerase family protein	[more]

BLAST of CmaCh14G010850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|74027092\|gb\|AAZ94642.1\|	1.5e-34	55.56	RNA polymerase beta I subunit [Cucumis sativus]	[more]
gi\|590000406\|ref\|YP_009004035.1\|	1.5e-34	55.56	RNA polymerase beta [Cucumis hystrix]	[more]
gi\|595645395\|gb\|AHM88855.1\|	1.5e-34	55.56	RNA polymerase beta (chloroplast) [Lagenaria siceraria]	[more]
gi\|67511389\|emb\|CAJ00749.1\|	1.5e-34	55.56	RNA polymerase beta chain (chloroplast) [Cucumis sativus]	[more]
gi\|346578182\|ref\|YP_004841774.1\|	1.5e-34	55.56	RNA polymerase beta [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006592	RNA_pol_N

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010850.1	CmaCh14G010850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 2..142 score: 3.
None	No IPR available	GENE3D	G3DSA:2.40.40.20		coord: 69..87 score: 3.6E-4coord: 128..144 score: 3.
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 2..140 score: 2.75

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G010850	Cucumber (Chinese Long) v3	cmacucB0293
CmaCh14G010850	Watermelon (97103) v2	cmawmbB248
CmaCh14G010850	Wax gourd	cmawgoB0289
CmaCh14G010850	Cucurbita maxima (Rimu)	cmacmaB288
CmaCh14G010850	Cucumber (Gy14) v1	cgycmaB0930
CmaCh14G010850	Cucurbita moschata (Rifu)	cmacmoB273
CmaCh14G010850	Wild cucumber (PI 183967)	cmacpiB257
CmaCh14G010850	Cucumber (Chinese Long) v2	cmacuB255
CmaCh14G010850	Melon (DHL92) v3.5.1	cmameB226
CmaCh14G010850	Watermelon (Charleston Gray)	cmawcgB221
CmaCh14G010850	Watermelon (97103) v1	cmawmB227
CmaCh14G010850	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G010850	Cucurbita pepo (Zucchini)	cmacpeB293
CmaCh14G010850	Bottle gourd (USVL1VR-Ls)	cmalsiB240
CmaCh14G010850	Cucumber (Gy14) v2	cgybcmaB320
CmaCh14G010850	Melon (DHL92) v3.6.1	cmamedB257
CmaCh14G010850	Silver-seed gourd	carcmaB0383