CmaCh14G008460 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G008460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Major latex-like protein
Location	Cma_Chr14 : 4330195 .. 4330614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAAACTGATAGCATTTGGGCAAAGGTTGACCTAAAATCTTCCCATGAGAAGTTATATGGGTTCTTCAGGAACCATTTGGGAGATTTGGTGAACTTGTTTCCTGAGAATTTCAATAGCATTCAACTTGTGGAAGGGCAACATTTCGAAAGGGGCAGTCTATTTCTAAGTAAATACGAATTGGGTGAGAGATTCTCTTCGTCTAAATTGGTTGGCACATTTCATTTCAATTGCGTTTCGATAATTATTTTGGTATTCGACATTTTAACTTATATTTTACCTTTAGAGATAAACGATATGGTCATCTAATTACATTCTGGTCGACTACTTTTTTATTATTTAATATTTTTTATAGCAAATTCTATTCTCAATTTGTTTTTAATGTTTGGATTGGTTGATTGGTGTCCAAATATATAA

mRNA sequence

ATGAGCAAAACTGATAGCATTTGGGCAAAGGTTGACCTAAAATCTTCCCATGAGAAGTTATATGGGTTCTTCAGGAACCATTTGGGAGATTTGGTGAACTTGTTTCCTGAGAATTTCAATAGCATTCAACTTGTGGAAGGGCAACATTTCGAAAGGGGCAGTCTATTTCTAACAAATTCTATTCTCAATTTGTTTTTAATGTTTGGATTGGTTGATTGGTGTCCAAATATATAA

Coding sequence (CDS)

ATGAGCAAAACTGATAGCATTTGGGCAAAGGTTGACCTAAAATCTTCCCATGAGAAGTTATATGGGTTCTTCAGGAACCATTTGGGAGATTTGGTGAACTTGTTTCCTGAGAATTTCAATAGCATTCAACTTGTGGAAGGGCAACATTTCGAAAGGGGCAGTCTATTTCTAACAAATTCTATTCTCAATTTGTTTTTAATGTTTGGATTGGTTGATTGGTGTCCAAATATATAA

Protein sequence

MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSLFLTNSILNLFLMFGLVDWCPNI

Homology

[Close]

BLAST of CmaCh14G008460 vs. TrEMBL
Match: N0DK07_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR3 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSLFLT 59
          M +TDSIW KVDLKSS EK+YGFFRNHLGDLV+LFPENFNSIQLVEGQHF+RGSL L+
Sbjct: 1  MVQTDSIWVKVDLKSSPEKVYGFFRNHLGDLVDLFPENFNSIQLVEGQHFDRGSLVLS 58

[Close]

BLAST of CmaCh14G008460 vs. TrEMBL
Match: N0DKL1_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-17
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          M +TDSIW KVDLKSS EK+YGFFRNHLGDLV+LFPE + SIQLVEGQHF  GS+
Sbjct: 1  MVQTDSIWVKVDLKSSPEKVYGFFRNHLGDLVDLFPETYQSIQLVEGQHFSSGSV 55

[Close]

BLAST of CmaCh14G008460 vs. TrEMBL
Match: N0DK19_CUCPE (Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-17
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          M +TDSIW KVDLKSS EK+YGFFRNHLGDLV+LFPE + SIQLVEGQHF  GS+
Sbjct: 1  MVQTDSIWVKVDLKSSPEKVYGFFRNHLGDLVDLFPETYQSIQLVEGQHFSSGSV 55

[Close]

BLAST of CmaCh14G008460 vs. TrEMBL
Match: A0A0A0LA34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.0e-14
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          MS+T+SIWAKV LKS  EK YGFFRNH+GDLV++FP+NF S Q +EG+ F  GS+
Sbjct: 1  MSQTESIWAKVPLKSPPEKFYGFFRNHMGDLVHMFPDNFQSFQFLEGESFTTGSV 55

[Close]

BLAST of CmaCh14G008460 vs. TrEMBL
Match: A0A0A0LAY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342350 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSLFL 58
          MS++DSI AKV+LKS+ EK YGFFRNH+ DL+NLFP+ +  I LVEGQ+   GS+ L
Sbjct: 1  MSRSDSIVAKVELKSNIEKFYGFFRNHVEDLMNLFPDLYQGIDLVEGQYLSAGSVIL 57

[Close]

BLAST of CmaCh14G008460 vs. NCBI nr
Match: gi|477504346|dbj|BAN14690.1| (major latex-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSLFLT 59
          M +TDSIW KVDLKSS EK+YGFFRNHLGDLV+LFPENFNSIQLVEGQHF+RGSL L+
Sbjct: 1  MVQTDSIWVKVDLKSSPEKVYGFFRNHLGDLVDLFPENFNSIQLVEGQHFDRGSLVLS 58

[Close]

BLAST of CmaCh14G008460 vs. NCBI nr
Match: gi|477504344|dbj|BAN14689.1| (major latex-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-17
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          M +TDSIW KVDLKSS EK+YGFFRNHLGDLV+LFPE + SIQLVEGQHF  GS+
Sbjct: 1  MVQTDSIWVKVDLKSSPEKVYGFFRNHLGDLVDLFPETYQSIQLVEGQHFSSGSV 55

[Close]

BLAST of CmaCh14G008460 vs. NCBI nr
Match: gi|477504342|dbj|BAN14688.1| (major latex-like protein [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-17
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          M +TDSIW KVDLKSS EK+YGFFRNHLGDLV+LFPE + SIQLVEGQHF  GS+
Sbjct: 1  MVQTDSIWVKVDLKSSPEKVYGFFRNHLGDLVDLFPETYQSIQLVEGQHFSSGSV 55

[Close]

BLAST of CmaCh14G008460 vs. NCBI nr
Match: gi|659114461|ref|XP_008457062.1| (PREDICTED: MLP-like protein 423 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 9.9e-14
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          MS+T+SIWAKV LKS  EK YGFFRNH+GDLV++FP+NF S Q +EG+ F  GS+
Sbjct: 1  MSQTESIWAKVQLKSPPEKFYGFFRNHMGDLVHMFPDNFQSFQFLEGESFTTGSV 55

[Close]

BLAST of CmaCh14G008460 vs. NCBI nr
Match: gi|449464144|ref|XP_004149789.1| (PREDICTED: MLP-like protein 34 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MSKTDSIWAKVDLKSSHEKLYGFFRNHLGDLVNLFPENFNSIQLVEGQHFERGSL 56
          MS+T+SIWAKV LKS  EK YGFFRNH+GDLV++FP+NF S Q +EG+ F  GS+
Sbjct: 1  MSQTESIWAKVPLKSPPEKFYGFFRNHMGDLVHMFPDNFQSFQFLEGESFTTGSV 55

The following BLAST results are available for this feature:

BLAST of CmaCh14G008460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G008460 vs. TrEMBL


Match Name	E-value	Identity	Description
N0DK07_CUCPE	1.3e-20	84.48	Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR3 PE=2 SV=1	[more]
N0DKL1_CUCPE	3.9e-17	78.18	Major latex-like protein OS=Cucurbita pepo subsp. ovifera GN=MLP-PG1 PE=2 SV=1	[more]
N0DK19_CUCPE	3.9e-17	78.18	Major latex-like protein OS=Cucurbita pepo subsp. pepo GN=MLP-GR1 PE=2 SV=1	[more]
A0A0A0LA34_CUCSA	9.0e-14	65.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1	[more]
A0A0A0LAY7_CUCSA	1.9e-11	61.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342350 PE=4 SV=1	[more]

BLAST of CmaCh14G008460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G008460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|477504346\|dbj\|BAN14690.1\|	1.9e-20	84.48	major latex-like protein [Cucurbita pepo subsp. pepo]	[more]
gi\|477504344\|dbj\|BAN14689.1\|	5.6e-17	78.18	major latex-like protein [Cucurbita pepo subsp. pepo]	[more]
gi\|477504342\|dbj\|BAN14688.1\|	5.6e-17	78.18	major latex-like protein [Cucurbita pepo subsp. ovifera]	[more]
gi\|659114461\|ref\|XP_008457062.1\|	9.9e-14	65.45	PREDICTED: MLP-like protein 423 [Cucumis melo]	[more]
gi\|449464144\|ref\|XP_004149789.1\|	1.3e-13	65.45	PREDICTED: MLP-like protein 34 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G008460.1	CmaCh14G008460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G008460	Cp4.1LG03g05890	Cucurbita pepo (Zucchini)	cmacpeB283

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G008460	Wax gourd	cmawgoB0319
CmaCh14G008460	Wax gourd	cmawgoB0333
CmaCh14G008460	Cucurbita maxima (Rimu)	cmacmaB255
CmaCh14G008460	Cucumber (Gy14) v1	cgycmaB0548
CmaCh14G008460	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G008460	Cucurbita moschata (Rifu)	cmacmoB257
CmaCh14G008460	Wild cucumber (PI 183967)	cmacpiB244
CmaCh14G008460	Cucumber (Chinese Long) v2	cmacuB242
CmaCh14G008460	Melon (DHL92) v3.5.1	cmameB243
CmaCh14G008460	Watermelon (Charleston Gray)	cmawcgB234
CmaCh14G008460	Watermelon (97103) v1	cmawmB243
CmaCh14G008460	Cucurbita pepo (Zucchini)	cmacpeB279
CmaCh14G008460	Bottle gourd (USVL1VR-Ls)	cmalsiB249
CmaCh14G008460	Cucumber (Gy14) v2	cgybcmaB308
CmaCh14G008460	Melon (DHL92) v3.6.1	cmamedB274
CmaCh14G008460	Silver-seed gourd	carcmaB1057
CmaCh14G008460	Cucumber (Chinese Long) v3	cmacucB0281
CmaCh14G008460	Watermelon (97103) v2	cmawmbB264