CmaCh14G007980 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G007980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ROTUNDIFOLIA like 21
Location	Cma_Chr14 : 4042000 .. 4042357 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATAGAAAGAACAAGAACAAGAACAAGAACAAGAAGGTTTTGTGGAGATCACGATCGTCTTTCGGAAGCTATATTAGAGAACAAAAAGGAAGACTTTACATTATTCGAAGCTGCATCGTAATGCTCCTCTGTTGGCACGACTGACTCCAATGTTCATGTTGATTTGTTTTTAAATTTAGTGAAAAGGGTTCGTACCACTAGAGTTGTTGCAAACGCCACCATGGAAGACAGGAAGAACAAGAAGGTTTCGTGGAGATCCCGATCATCTTTCAAAAGATATATTAGAGAGCAAAAAGAAAGGCTTTACATTATTCGAAGCTGCATCGTAATGCTCCTCTGTTGGCATGACTAA

mRNA sequence

ATGGGAGATAGAAAGAACAAGAACAAGAACAAGAACAAGAAGAGAACAAAAAGGAAGACTTTACATTATTCGAAGCTGCATCGTAATGCTCCTCTGTTGGCACGACTGACTCCAATGGTTCGTACCACTAGAGTTGTTGCAAACGCCACCATGGAAGACAGGAAGAACAAGAAGGTTTCGTGGAGATCCCGATCATCTTTCAAAAGATATATTAGAGAGCAAAAAGAAAGGCTTTACATTATTCGAAGCTGCATCGTAATGCTCCTCTGTTGGCATGACTAA

Coding sequence (CDS)

ATGGGAGATAGAAAGAACAAGAACAAGAACAAGAACAAGAAGAGAACAAAAAGGAAGACTTTACATTATTCGAAGCTGCATCGTAATGCTCCTCTGTTGGCACGACTGACTCCAATGGTTCGTACCACTAGAGTTGTTGCAAACGCCACCATGGAAGACAGGAAGAACAAGAAGGTTTCGTGGAGATCCCGATCATCTTTCAAAAGATATATTAGAGAGCAAAAAGAAAGGCTTTACATTATTCGAAGCTGCATCGTAATGCTCCTCTGTTGGCATGACTAA

Protein sequence

MGDRKNKNKNKNKKRTKRKTLHYSKLHRNAPLLARLTPMVRTTRVVANATMEDRKNKKVSWRSRSSFKRYIREQKERLYIIRSCIVMLLCWHD

Homology

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BLAST of CmaCh14G007980 vs. TAIR10
Match: AT1G67265.1 (AT1G67265.1 ROTUNDIFOLIA like 21)

HSP 1 Score: 47.4 bits (111), Expect = 5.7e-06
Identity = 18/24 (75.00%), Postives = 22/24 (91.67%), Query Frame = 1


Query: 70 YIREQKERLYIIRSCIVMLLCWHD 94
          Y++EQK RLYIIR C+VML+CWHD
Sbjct: 17 YLKEQKGRLYIIRRCVVMLICWHD 40

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BLAST of CmaCh14G007980 vs. NCBI nr
Match: gi|659123270|ref|XP_008461574.1| (PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 54 RKNKKVSWRSRSSFKRYIREQKERLYIIRSCIVMLLCWHD 94
          +K KKVSWRSRSS   YIREQK RLYIIRSCIVMLLCWHD
Sbjct: 15 KKEKKVSWRSRSSLGGYIREQKGRLYIIRSCIVMLLCWHD 54

[Close]

BLAST of CmaCh14G007980 vs. NCBI nr
Match: gi|778680631|ref|XP_011651363.1| (PREDICTED: uncharacterized protein LOC105434872 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-09
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 54 RKNKKVSWRSRSSFKRYIREQKERLYIIRSCIVMLLCWHD 94
          +K+KKVSWRSRSS   YI+EQK RLYIIRSCIVMLLCWHD
Sbjct: 15 KKDKKVSWRSRSSLGGYIKEQKGRLYIIRSCIVMLLCWHD 54

The following BLAST results are available for this feature:

BLAST of CmaCh14G007980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G007980 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmaCh14G007980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67265.1	5.7e-06	75.00	ROTUNDIFOLIA like 21	[more]

BLAST of CmaCh14G007980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123270\|ref\|XP_008461574.1\|	1.8e-09	85.00	PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo]	[more]
gi\|778680631\|ref\|XP_011651363.1\|	3.0e-09	82.50	PREDICTED: uncharacterized protein LOC105434872 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G007980.1	CmaCh14G007980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 72..90 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G007980	Cucsa.031610	Cucumber (Gy14) v1	cgycmaB0005

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G007980	Cucurbita maxima (Rimu)	cmacmaB255
CmaCh14G007980	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G007980	Cucurbita moschata (Rifu)	cmacmoB257
CmaCh14G007980	Wild cucumber (PI 183967)	cmacpiB244
CmaCh14G007980	Cucumber (Chinese Long) v2	cmacuB242
CmaCh14G007980	Melon (DHL92) v3.5.1	cmameB243
CmaCh14G007980	Watermelon (Charleston Gray)	cmawcgB234
CmaCh14G007980	Watermelon (97103) v1	cmawmB244
CmaCh14G007980	Cucurbita pepo (Zucchini)	cmacpeB279
CmaCh14G007980	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G007980	Bottle gourd (USVL1VR-Ls)	cmalsiB249
CmaCh14G007980	Cucumber (Gy14) v2	cgybcmaB308
CmaCh14G007980	Melon (DHL92) v3.6.1	cmamedB270
CmaCh14G007980	Melon (DHL92) v3.6.1	cmamedB274
CmaCh14G007980	Silver-seed gourd	carcmaB0668
CmaCh14G007980	Silver-seed gourd	carcmaB1057
CmaCh14G007980	Cucumber (Chinese Long) v3	cmacucB0281
CmaCh14G007980	Watermelon (97103) v2	cmawmbB264
CmaCh14G007980	Wax gourd	cmawgoB0319