CmaCh14G007830 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G007830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 3905425 .. 3906747 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGAGCTCCTTCTCAGCACTTTCCCGGAATGCTGCATTCACCTCTTCAGCAAAGGTCTTCTTAGAAACCTGGACAACAAGGTCTACAACAGAAACATTTGGAGTGGGCACACGAAGTGCAATCCCATTGAGTTTTCCTTTAAGAGAAGGGAGGACTAGGGCAACAGCTTTGGCTGCTCCTGTGGAGGTAGGAACAATGTTGAGTGCAGCAGCTCTTGCCCTTCTGAGGTCACGGTGGCTGGCATCAAGTAGCCTCTGGTCACCAGTGTAGGAGTGAGTGGTAGTCATTGTTCCCTTGATGATACCTGCCATAGATTTATACCAAAACCTTCACAAACCTGAATTTTAGCACCTGAATTTGCAAGGGCCTAGAAATGTGAGTGCTATTGATGAATCTATGCTGGGATTCAGTATGTATTACCAAACTTCTGGTCAAGGACCTTGACAAAAGGAGCTAGGCAATTGGTAGTGCAAGAAGCATTGCTGATGATAGGCTCATCAGGGCTGTAAGCGTCGGCATTAACCCCAACGACGTAAGTCGGAATGTCACCCTTCCCAGGTGCTGTAATTAGGACCTTCTTTGCTCCAGCCTGAATGTGCTTCCCTGCACCCTCTCTATCAACAAACACTCCAGTTCCTTCAATCACCAAGTCTATTCCCAAGTCCCTGCATTGTCATTTATCTAATCATTCAATTTTTTTTTTATCTCATACAGATAACGAATGAAAAGTAGAAGCATAGAAGTTGAACACCCACTTCCAGGGAAGGTTGAGAGGGTTGCGGTTGGAGACCACCTGGATGATCTTGCCATCAACTGAAATAGCTTCATCTCCGGCAGGTTTGACATCGGCATCAAAGATGCCGAGGGTGGAGTCGTACTTGAGGAGGTGAGAAGCTTGCTTGACGCCGCCGGAATCGTTGATGGCAATGACATCAAGTGGGGAATCCTTGCGACCATGCCAGCACCTCAAGAAATTCCTGCCAATCCTTCCAAACCCATTGATGGCTACCTTAAGCTTTGCTTCCACAATCCCTTTCTTATACCCTCCGCTACTTCCCACCTTCAAGAATTTAATGGATGTAGGTATAAGGCACATGAAGAATCATTAGTGTAGTATGAATACTCACTTCTATATAACCCTCTCAGGCTATATCAGATATGAATCAAGAGACCATAGTACGTGCTTGAAGAAGTTTAGAGGAAAAATAAGATGAAGCGGAATATATTCAGGGGTCCAAATAGAGCTTTCCAAAGAAATAGCTTAGTATCTGGGATGATTTTAACGGTGGCGTATTCCCTCTGGCTATATAATCGTGT

mRNA sequence

ATGCCATTGAGCTCCTTCTCAGCACTTTCCCGGAATGCTGCATTCACCTCTTCAGCAAAGGTCTTCTTAGAAACCTGGACAACAAGGTCTACAACAGAAACATTTGGAGTGGGCACACGAAGTGCAATCCCATTGAGTTTTCCTTTAAGAGAAGGGAGGACTAGGGCAACAGCTTTGGCTGCTCCTGTGGAGATAACGAATGAAAAGTAGAAGCATAGAAGTTGAACACCCACTTCCAGGGAAGGTTGAGAGGGTTGCGGTTGGAGACCACCTGGATGATCTTGCCATCAACTGAAATAGCTTCATCTCCGGCAGGTTTGACATCGGCATCAAAGATGCCGAGGGTGGAGTCGTACTTGAGGAGGTGAGAAGCTTGCTTGACGCCGCCGGAATCGTTGATGGCAATGACATCAAGTGGGGAATCCTTGCGACCATGCCAGCACCTCAAGAAATTCCTGCCAATCCTTCCAAACCCATTGATGGCTACCTTAAGCTTTGCTTCCACAATCCCTTTCTTATACCCTCCGCTACTTCCCACCTTCAAGAATTTAATGGATGTAGGTATAAGGCACATGAAGAATCATTAGTGTAGTATGAATACTCACTTCTATATAACCCTCTCAGGCTATATCAGATATGAATCAAGAGACCATAGTACGTGCTTGAAGAAGTTTAGAGGAAAAATAAGATGAAGCGGAATATATTCAGGGGTCCAAATAGAGCTTTCCAAAGAAATAGCTTAGTATCTGGGATGATTTTAACGGTGGCGTATTCCCTCTGGCTATATAATCGTGT

Coding sequence (CDS)

ATGCCATTGAGCTCCTTCTCAGCACTTTCCCGGAATGCTGCATTCACCTCTTCAGCAAAGGTCTTCTTAGAAACCTGGACAACAAGGTCTACAACAGAAACATTTGGAGTGGGCACACGAAGTGCAATCCCATTGAGTTTTCCTTTAAGAGAAGGGAGGACTAGGGCAACAGCTTTGGCTGCTCCTGTGGAGATAACGAATGAAAAGTAG

Protein sequence

MPLSSFSALSRNAAFTSSAKVFLETWTTRSTTETFGVGTRSAIPLSFPLREGRTRATALAAPVEITNEK
Homology
[Close]
BLAST of CmaCh14G007830 vs. TrEMBL
Match: A5BUM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031969 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-13
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 1   MPLSSFSALSRNAAFTSSAKVFLE-TWTTRSTTETFGVGTRSAIPLSFPLREGRTRATAL 60
           +PLSSFSAL   AAFTSSAKV    T TTRSTTET  VGTR A+PLSFPLR GRTRATA 
Sbjct: 398 IPLSSFSALFLKAAFTSSAKVSPSLTRTTRSTTETLDVGTRRAMPLSFPLRLGRTRATAF 457

Query: 61  AAPVEI 66
           AAPVE+
Sbjct: 458 AAPVEV 463

[Close]
BLAST of CmaCh14G007830 vs. TrEMBL
Match: A0A0A9LVV8_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.2e-10
Identity = 44/64 (68.75%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 1  MPLSSFSALSRNAAFTSSAKV-FLETWTTRSTTETFGVGTRSAIPLSFPLREGRTRATAL 60
          MPLS  SA  RNA FTSSA +       TRSTTETFGVGTRSA+PLS P   G TRATAL
Sbjct: 1  MPLSGPSAAFRNAPFTSSAVMPVFSVLITRSTTETFGVGTRSAMPLSLPFSWGSTRATAL 60

Query: 61 AAPV 64
          AAPV
Sbjct: 61 AAPV 64

[Close]
BLAST of CmaCh14G007830 vs. NCBI nr
Match: gi|147862555|emb|CAN81495.1| (hypothetical protein VITISV_031969 [Vitis vinifera])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-13
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 1   MPLSSFSALSRNAAFTSSAKVFLE-TWTTRSTTETFGVGTRSAIPLSFPLREGRTRATAL 60
           +PLSSFSAL   AAFTSSAKV    T TTRSTTET  VGTR A+PLSFPLR GRTRATA 
Sbjct: 398 IPLSSFSALFLKAAFTSSAKVSPSLTRTTRSTTETLDVGTRRAMPLSFPLRLGRTRATAF 457

Query: 61  AAPVEI 66
           AAPVE+
Sbjct: 458 AAPVEV 463

The following BLAST results are available for this feature:
BLAST of CmaCh14G007830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G007830 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BUM4_VITVI2.3e-1375.76Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031969 PE=4 SV=1[more]
A0A0A9LVV8_ARUDO9.2e-1068.75Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of CmaCh14G007830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G007830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147862555|emb|CAN81495.1|3.4e-1375.76hypothetical protein VITISV_031969 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G007830.1CmaCh14G007830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G007830Cucurbita maxima (Rimu)cmacmaB131
CmaCh14G007830Cucumber (Gy14) v1cgycmaB0005
CmaCh14G007830Cucurbita moschata (Rifu)cmacmoB243
CmaCh14G007830Cucurbita moschata (Rifu)cmacmoB244
CmaCh14G007830Wild cucumber (PI 183967)cmacpiB244
CmaCh14G007830Cucumber (Chinese Long) v2cmacuB242
CmaCh14G007830Melon (DHL92) v3.5.1cmameB243
CmaCh14G007830Watermelon (Charleston Gray)cmawcgB234
CmaCh14G007830Watermelon (97103) v1cmawmB244
CmaCh14G007830Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G007830Cucurbita pepo (Zucchini)cmacpeB289
CmaCh14G007830Bottle gourd (USVL1VR-Ls)cmalsiB249
CmaCh14G007830Cucumber (Gy14) v2cgybcmaB308
CmaCh14G007830Melon (DHL92) v3.6.1cmamedB271
CmaCh14G007830Silver-seed gourdcarcmaB0668
CmaCh14G007830Silver-seed gourdcarcmaB0681
CmaCh14G007830Cucumber (Chinese Long) v3cmacucB0281
CmaCh14G007830Watermelon (97103) v2cmawmbB264
CmaCh14G007830Wax gourdcmawgoB0319
CmaCh14G007830Wax gourdcmawgoB0338