CmaCh14G007740 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G007740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChalcone synthase 1
LocationCma_Chr14 : 3856709 .. 3857122 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCGTCACCGACATCCGCAAGGCTCAACGAGCCAATGGCCCCCCTATCATTCTCGCCATCGACACCGCTGCACCCCAACATCATTCTCTAGTCTGGCTATCTCAACTTCTACTTTCGCATAACTAATTCCAAGCATATGACTATCCTCAAGGACAAATTTGTTCGAATGCATATGTAAACAACGGTTTACTGATATTTATTTATTTAATCCACAGTTAACAGAGATATACTGATGTTCATGAATTACATTATTGAATTTATTAGAATAATTCCGCTAAATTTTGAGAAATGTTATTATGACATTGACATGCAAGTGAGAAGTCTATGATCAGGAAGCGTCACATGTACCTAACGGAGGAAATTCTTAAAGAGAATCAAATATGTGCGAGCACTTGGCACCTTCTCTAG

mRNA sequence

ATGGCCTCCGTCACCGACATCCGCAAGGCTCAACGAGCCAATGGCCCCCCTATCATTCTCGCCATCGACACCGCTGCACCCCAACATCATTCTCTATCTATGATCAGGAAGCGTCACATGTACCTAACGGAGGAAATTCTTAAAGAGAATCAAATATGTGCGAGCACTTGGCACCTTCTCTAG

Coding sequence (CDS)

ATGGCCTCCGTCACCGACATCCGCAAGGCTCAACGAGCCAATGGCCCCCCTATCATTCTCGCCATCGACACCGCTGCACCCCAACATCATTCTCTATCTATGATCAGGAAGCGTCACATGTACCTAACGGAGGAAATTCTTAAAGAGAATCAAATATGTGCGAGCACTTGGCACCTTCTCTAG

Protein sequence

MASVTDIRKAQRANGPPIILAIDTAAPQHHSLSMIRKRHMYLTEEILKENQICASTWHLL
Homology
[Close]
BLAST of CmaCh14G007740 vs. Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-07
Identity = 36/85 (42.35%), Postives = 43/85 (50.59%), Query Frame = 1 

Query: 1  MASVTDIRKAQRANGPPIILAIDTAAPQHH------------------------------ 55
          MA+V +IR AQRA+GP  +LAI TA P H                               
Sbjct: 1  MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMC 60

[Close]
BLAST of CmaCh14G007740 vs. Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-07
Identity = 35/80 (43.75%), Postives = 43/80 (53.75%), Query Frame = 1 

Query: 1  MASVTDIRKAQRANGPPIILAIDTAAP-------------------QHHSL--------- 51
          M SV++IRKAQRA GP  ILAI TA P                   +H ++         
Sbjct: 1  MVSVSEIRKAQRAEGPATILAIGTATPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMC 60

[Close]
BLAST of CmaCh14G007740 vs. Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-07
Identity = 36/85 (42.35%), Postives = 45/85 (52.94%), Query Frame = 1 

Query: 1  MASVTDIRKAQRANGPPIILAIDTAAPQH------------------HSL---------- 55
          M +V ++RKAQRA GP  I+AI T+ PQ+                  H +          
Sbjct: 1  MVTVEEVRKAQRAQGPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMC 60

[Close]
BLAST of CmaCh14G007740 vs. Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 36/83 (43.37%), Postives = 43/83 (51.81%), Query Frame = 1 

Query: 3  SVTDIRKAQRANGPPIILAIDTAAPQHHSL------------------------------ 55
          S+ +IRKAQRA+GP  IL I TA P +H L                              
Sbjct: 4  SLEEIRKAQRADGPAGILGIGTANPPNHVLQAEYPDYYFRITNSDHMTDLKEKFKRMCDK 63

[Close]
BLAST of CmaCh14G007740 vs. Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 35/84 (41.67%), Postives = 44/84 (52.38%), Query Frame = 1 

Query: 1  MASVTDIRKAQRANGPPIILAIDTAAP-------------------QHHS---------- 54
          M +V DIR+AQRA GP  ++AI TA P                   +H +          
Sbjct: 1  MVTVEDIRRAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHKAELKEKFKRMC 60

[Close]
BLAST of CmaCh14G007740 vs. TrEMBL
Match: V7CIC8_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G0392001g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-08
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 1  MASVTDIRKAQRANGPPIILAIDTAAPQHHSLSMIRKRHMYLTEEILKEN-QICA 55
          M SV++IR+AQRA GP  ILAI TA P +   SMI+KR+M+L EEILKEN  +CA
Sbjct: 1  MVSVSEIRQAQRAEGPANILAIGTATPSNCDKSMIKKRYMHLNEEILKENPNMCA 55

[Close]
BLAST of CmaCh14G007740 vs. TrEMBL
Match: C0KXX8_PHYFE (Chalcone synthase (Fragment) OS=Physaria fendleri GN=CHS PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-06
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 3  SVTDIRKAQRANGPPIILAIDTAAPQHHSL------------------------------ 55
          S+ +IRKAQRA+GP  ILAI TA P++H L                              
Sbjct: 8  SLDEIRKAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDK 67

[Close]
BLAST of CmaCh14G007740 vs. TrEMBL
Match: C0KXX9_PHYFE (Chalcone synthase (Fragment) OS=Physaria fendleri GN=CHS PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-06
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 3  SVTDIRKAQRANGPPIILAIDTAAPQHHSL------------------------------ 55
          S+ +IRKAQRA+GP  ILAI TA P++H L                              
Sbjct: 8  SLDEIRKAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMSDLKEKFKRMCDK 67

[Close]
BLAST of CmaCh14G007740 vs. TrEMBL
Match: Q64HU4_CRUHI (Chalcone synthase (Fragment) OS=Crucihimalaya himalaica GN=CHS PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-06
Identity = 38/84 (45.24%), Postives = 45/84 (53.57%), Query Frame = 1 

Query: 2  ASVTDIRKAQRANGPPIILAIDTAAPQHHSL----------------------------- 55
          +S+ +IRKAQRA GP  ILAIDTA P++H L                             
Sbjct: 7  SSLDEIRKAQRAGGPAGILAIDTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCD 66

[Close]
BLAST of CmaCh14G007740 vs. TrEMBL
Match: A0A0A0LDT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G600020 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-06
Identity = 40/86 (46.51%), Postives = 46/86 (53.49%), Query Frame = 1 

Query: 1  MAS-VTDIRKAQRANGPPIILAIDTAAPQHHSL--------------------------- 55
          MAS V++IRKAQRA+GP  +LAI TA P H  L                           
Sbjct: 1  MASVVSEIRKAQRADGPATVLAIGTATPPHSVLQSDYPDYYFRITKSEHMTQLKEKFSRM 60

[Close]
BLAST of CmaCh14G007740 vs. TAIR10
Match: AT5G13930.1 (AT5G13930.1 Chalcone and stilbene synthase family protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 35/84 (41.67%), Postives = 44/84 (52.38%), Query Frame = 1 

Query: 2  ASVTDIRKAQRANGPPIILAIDTAAPQHHSL----------------------------- 55
          +S+ +IR+AQRA+GP  ILAI TA P++H L                             
Sbjct: 7  SSLDEIRQAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCD 66

[Close]
BLAST of CmaCh14G007740 vs. NCBI nr
Match: gi|593788024|ref|XP_007157051.1| (hypothetical protein PHAVU_002G0392001g, partial [Phaseolus vulgaris])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-07
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 

Query: 1  MASVTDIRKAQRANGPPIILAIDTAAPQHHSLSMIRKRHMYLTEEILKEN-QICA 55
          M SV++IR+AQRA GP  ILAI TA P +   SMI+KR+M+L EEILKEN  +CA
Sbjct: 1  MVSVSEIRQAQRAEGPANILAIGTATPSNCDKSMIKKRYMHLNEEILKENPNMCA 55

[Close]
BLAST of CmaCh14G007740 vs. NCBI nr
Match: gi|224381640|gb|ACN41941.1| (chalcone synthase, partial [Physaria fendleri])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 3  SVTDIRKAQRANGPPIILAIDTAAPQHHSL------------------------------ 55
          S+ +IRKAQRA+GP  ILAI TA P++H L                              
Sbjct: 8  SLDEIRKAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMSDLKEKFKRMCDK 67

[Close]
BLAST of CmaCh14G007740 vs. NCBI nr
Match: gi|224381638|gb|ACN41940.1| (chalcone synthase, partial [Physaria fendleri])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 3  SVTDIRKAQRANGPPIILAIDTAAPQHHSL------------------------------ 55
          S+ +IRKAQRA+GP  ILAI TA P++H L                              
Sbjct: 8  SLDEIRKAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDK 67

[Close]
BLAST of CmaCh14G007740 vs. NCBI nr
Match: gi|51103309|gb|AAT96387.1| (chalcone synthase [Crucihimalaya himalaica])

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 38/84 (45.24%), Postives = 45/84 (53.57%), Query Frame = 1 

Query: 2  ASVTDIRKAQRANGPPIILAIDTAAPQHHSL----------------------------- 55
          +S+ +IRKAQRA GP  ILAIDTA P++H L                             
Sbjct: 7  SSLDEIRKAQRAGGPAGILAIDTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCD 66

[Close]
BLAST of CmaCh14G007740 vs. NCBI nr
Match: gi|449455938|ref|XP_004145707.1| (PREDICTED: chalcone synthase 2 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 40/86 (46.51%), Postives = 46/86 (53.49%), Query Frame = 1 

Query: 1  MAS-VTDIRKAQRANGPPIILAIDTAAPQHHSL--------------------------- 55
          MAS V++IRKAQRA+GP  +LAI TA P H  L                           
Sbjct: 1  MASVVSEIRKAQRADGPATVLAIGTATPPHSVLQSDYPDYYFRITKSEHMTQLKEKFSRM 60

The following BLAST results are available for this feature:
BLAST of CmaCh14G007740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CHS2_CITSI3.1e-0742.35Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1[more]
CHS6_PEA7.0e-0743.75Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1[more]
CHSE_IPONI9.1e-0742.35Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1[more]
CHSY_ARAAL1.2e-0643.37Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1[more]
CHS1_CAMSI1.2e-0641.67Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1[more]
BLAST of CmaCh14G007740 vs. TrEMBL
Match NameE-valueIdentityDescription
V7CIC8_PHAVU7.5e-0861.82Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G0392001g P... [more]
C0KXX8_PHYFE1.8e-0646.99Chalcone synthase (Fragment) OS=Physaria fendleri GN=CHS PE=3 SV=1[more]
C0KXX9_PHYFE1.8e-0646.99Chalcone synthase (Fragment) OS=Physaria fendleri GN=CHS PE=3 SV=1[more]
Q64HU4_CRUHI4.1e-0645.24Chalcone synthase (Fragment) OS=Crucihimalaya himalaica GN=CHS PE=3 SV=1[more]
A0A0A0LDT8_CUCSA4.1e-0646.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G600020 PE=3 SV=1[more]
BLAST of CmaCh14G007740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13930.11.5e-0741.67 Chalcone and stilbene synthase family protein[more]
BLAST of CmaCh14G007740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|593788024|ref|XP_007157051.1|1.1e-0761.82hypothetical protein PHAVU_002G0392001g, partial [Phaseolus vulgaris][more]
gi|224381640|gb|ACN41941.1|2.7e-0646.99chalcone synthase, partial [Physaria fendleri][more]
gi|224381638|gb|ACN41940.1|2.7e-0646.99chalcone synthase, partial [Physaria fendleri][more]
gi|51103309|gb|AAT96387.1|5.9e-0645.24chalcone synthase [Crucihimalaya himalaica][more]
gi|449455938|ref|XP_004145707.1|5.9e-0646.51PREDICTED: chalcone synthase 2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G007740.1CmaCh14G007740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G007740Cucurbita maxima (Rimu)cmacmaB131
CmaCh14G007740Cucumber (Gy14) v1cgycmaB0432
CmaCh14G007740Cucurbita moschata (Rifu)cmacmoB243
CmaCh14G007740Cucurbita moschata (Rifu)cmacmoB244
CmaCh14G007740Wild cucumber (PI 183967)cmacpiB249
CmaCh14G007740Cucumber (Chinese Long) v2cmacuB247
CmaCh14G007740Melon (DHL92) v3.5.1cmameB243
CmaCh14G007740Watermelon (Charleston Gray)cmawcgB234
CmaCh14G007740Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G007740Cucurbita pepo (Zucchini)cmacpeB289
CmaCh14G007740Bottle gourd (USVL1VR-Ls)cmalsiB249
CmaCh14G007740Cucumber (Gy14) v2cgybcmaB313
CmaCh14G007740Melon (DHL92) v3.6.1cmamedB271
CmaCh14G007740Silver-seed gourdcarcmaB0681
CmaCh14G007740Cucumber (Chinese Long) v3cmacucB0286
CmaCh14G007740Watermelon (97103) v2cmawmbB264
CmaCh14G007740Wax gourdcmawgoB0319