CmaCh14G005310 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G005310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr14 : 2642128 .. 2642391 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGGATGATGAACAAGATCCAAGAAACGCTGCACCGCCGTCAGAAGCAGCCGCACGACGGAGAGGAGAAAGACGGCGGCGGGATTGTGGAGAGGATGAAGGAGAAGATCCATGGCTACAAGGAGAAGAAGCAAGAGAAGAAGAAGCAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGGAGGAAAAATCTAAAGAAGAAGAAGATGGCGGCGGCCACAGCAGCGACAGCGACTCCGACAGTGGCAGCGGAAGCGATTAG

mRNA sequence

ATGTCAGGGATGATGAACAAGATCCAAGAAACGCTGCACCGCCGTCAGAAGCAGCCGCACGACGGAGAGGAGAAAGACGGCGGCGGGATTGTGGAGAGGATGAAGGAGAAGATCCATGGCTACAAGGAGAAGAAGCAAGAGAAGAAGAAGCAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGGAGGAAAAATCTAAAGAAGAAGAAGATGGCGGCGGCCACAGCAGCGACAGCGACTCCGACAGTGGCAGCGGAAGCGATTAG

Coding sequence (CDS)

ATGTCAGGGATGATGAACAAGATCCAAGAAACGCTGCACCGCCGTCAGAAGCAGCCGCACGACGGAGAGGAGAAAGACGGCGGCGGGATTGTGGAGAGGATGAAGGAGAAGATCCATGGCTACAAGGAGAAGAAGCAAGAGAAGAAGAAGCAGAAGAAGGAGAAGAAGGAGAAGAAGAAAAAGGAGGAAAAATCTAAAGAAGAAGAAGATGGCGGCGGCCACAGCAGCGACAGCGACTCCGACAGTGGCAGCGGAAGCGATTAG

Protein sequence

MSGMMNKIQETLHRRQKQPHDGEEKDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEKKKKEEKSKEEEDGGGHSSDSDSDSGSGSD

Homology

[Close]

BLAST of CmaCh14G005310 vs. TrEMBL
Match: A0A0A0LCI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822295 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1  MSGMMNKIQETLHRRQKQPHDGEE--KDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEK 60
          M+G+M KIQET+   +KQ HDGE    +G GIVE+MKEKIHGYKEK +EKKKQ+KE+KEK
Sbjct: 1  MAGIMKKIQETVQSHKKQ-HDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEK 60

Query: 61 KKKEEKSK---------EEEDGGGHSSDSDS-DSGSGSD 88
          K+KE+K K         EEE+ GG SSD DS DSG GSD
Sbjct: 61 KEKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 98

[Close]

BLAST of CmaCh14G005310 vs. NCBI nr
Match: gi|700204345|gb|KGN59478.1| (hypothetical protein Csa_3G822295 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-10
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 1  MSGMMNKIQETLHRRQKQPHDGEE--KDGGGIVERMKEKIHGYKEKKQEKKKQKKEKKEK 60
          M+G+M KIQET+   +KQ HDGE    +G GIVE+MKEKIHGYKEK +EKKKQ+KE+KEK
Sbjct: 1  MAGIMKKIQETVQSHKKQ-HDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEK 60

Query: 61 KKKEEKSK---------EEEDGGGHSSDSDS-DSGSGSD 88
          K+KE+K K         EEE+ GG SSD DS DSG GSD
Sbjct: 61 KEKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 98

The following BLAST results are available for this feature:

BLAST of CmaCh14G005310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G005310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI3_CUCSA	5.2e-10	61.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822295 PE=4 SV=1	[more]

BLAST of CmaCh14G005310 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh14G005310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204345\|gb\|KGN59478.1\|	7.5e-10	61.62	hypothetical protein Csa_3G822295 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G005310.1	CmaCh14G005310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 31..70 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G005310	Bhi11G002368	Wax gourd	cmawgoB0291

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G005310	Silver-seed gourd	carcmaB0343
CmaCh14G005310	Cucumber (Chinese Long) v3	cmacucB0279
CmaCh14G005310	Watermelon (97103) v2	cmawmbB249
CmaCh14G005310	Cucurbita maxima (Rimu)	cmacmaB290
CmaCh14G005310	Cucumber (Gy14) v1	cgycmaB0926
CmaCh14G005310	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G005310	Cucurbita moschata (Rifu)	cmacmoB274
CmaCh14G005310	Wild cucumber (PI 183967)	cmacpiB241
CmaCh14G005310	Cucumber (Chinese Long) v2	cmacuB239
CmaCh14G005310	Melon (DHL92) v3.5.1	cmameB229
CmaCh14G005310	Watermelon (Charleston Gray)	cmawcgB222
CmaCh14G005310	Watermelon (97103) v1	cmawmB228
CmaCh14G005310	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G005310	Cucurbita pepo (Zucchini)	cmacpeB295
CmaCh14G005310	Bottle gourd (USVL1VR-Ls)	cmalsiB242
CmaCh14G005310	Cucumber (Gy14) v2	cgybcmaB306
CmaCh14G005310	Melon (DHL92) v3.6.1	cmamedB260