CmaCh13G009940 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G009940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr13 : 7687633 .. 7687857 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCGAATGGGGTGGAAGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGACTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAAACAGTGGGAAGTTCAGCTAATATGACTCCACTTCAGTTCTTTGAGTTCCTTCCATTGAAGAACTCTCCTTAA

mRNA sequence

ATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCGAATGGGGTGGAAGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGACTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAAACAGTGGGAAGTTCAGCTAATATGACTCCACTTCAGTTCTTTGAGTTCCTTCCATTGAAGAACTCTCCTTAA

Coding sequence (CDS)

ATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCGAATGGGGTGGAAGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGACTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAAACAGTGGGAAGTTCAGCTAATATGACTCCACTTCAGTTCTTTGAGTTCCTTCCATTGAAGAACTCTCCTTAA

Protein sequence

MHSKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSDSRNGEISEGKNGFETVGSSANMTPLQFFEFLPLKNSP
Homology
[Close]
BLAST of CmaCh13G009940 vs. TrEMBL
Match: A0A0A0LVV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042780 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-11
Identity = 56/93 (60.22%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 1   MHSKSH--SNI----GGFAPNGVEE-LEESEE-------AETLQLFPLCSDSRN-GEISE 60
           MH K H  SNI    G F   GVEE LEE EE       +ETLQLFPLCSD RN GEI  
Sbjct: 295 MHPKCHRRSNINVISGNFDVIGVEEELEEEEEEEAECGESETLQLFPLCSDRRNGGEIVG 354

Query: 61  GK--NGFETVG----SSANMTPLQFFEFLPLKN 73
           GK  NG ETV     +S N+TPLQFFEFLPLKN
Sbjct: 355 GKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN 387

[Close]
BLAST of CmaCh13G009940 vs. TrEMBL
Match: A5AY44_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030358 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 3   SKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSDSRNGEISEGKNGFETVGSSANMTPL 62
           S+ H+++ G   +   E EE  E++TLQLFPL S   N  I+E +        + N+TP 
Sbjct: 279 SEGHNHLAGVGADHSNE-EEGGESQTLQLFPLRSGBGNENINEKEGEISVAAMNTNLTPH 338

Query: 63  QFFEFLPLKN 73
           QFFEFLPLKN
Sbjct: 339 QFFEFLPLKN 347

[Close]
BLAST of CmaCh13G009940 vs. TrEMBL
Match: F6GSK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02460 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 3   SKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSDSRNGEISEGKNGFETVGSSANMTPL 62
           S+ H+++ G   +   E EE  E++TLQLFPL S   N  I+E +        + N+TP 
Sbjct: 276 SEGHNHLAGVGADHSNE-EEGGESQTLQLFPLRSGDGNENINEKEGEISVAAMNTNLTPH 335

Query: 63  QFFEFLPLKN 73
           QFFEFLPLKN
Sbjct: 336 QFFEFLPLKN 344

[Close]
BLAST of CmaCh13G009940 vs. NCBI nr
Match: gi|700209075|gb|KGN64171.1| (hypothetical protein Csa_1G042780 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11
Identity = 56/93 (60.22%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 1   MHSKSH--SNI----GGFAPNGVEE-LEESEE-------AETLQLFPLCSDSRN-GEISE 60
           MH K H  SNI    G F   GVEE LEE EE       +ETLQLFPLCSD RN GEI  
Sbjct: 295 MHPKCHRRSNINVISGNFDVIGVEEELEEEEEEEAECGESETLQLFPLCSDRRNGGEIVG 354

Query: 61  GK--NGFETVG----SSANMTPLQFFEFLPLKN 73
           GK  NG ETV     +S N+TPLQFFEFLPLKN
Sbjct: 355 GKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN 387

[Close]
BLAST of CmaCh13G009940 vs. NCBI nr
Match: gi|659066838|ref|XP_008463696.1| (PREDICTED: WUSCHEL-related homeobox 1-like [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 54/93 (58.06%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 1   MHSKSH---SNI----GGFAPNGVEE-LEESEE------AETLQLFPLCSDSRN-GEISE 60
           MH K H   +NI    G F   GVEE LE+ EE      +ETLQLFPLCSD RN GEI  
Sbjct: 297 MHPKCHRRSNNINVISGNFDVIGVEEELEDEEEEEECGESETLQLFPLCSDRRNGGEIIG 356

Query: 61  GK--NGFETVG----SSANMTPLQFFEFLPLKN 73
           GK  NG ETV     +S N+TPLQFFEFLPLKN
Sbjct: 357 GKNNNGCETVENSGMNSTNLTPLQFFEFLPLKN 389

[Close]
BLAST of CmaCh13G009940 vs. NCBI nr
Match: gi|147818819|emb|CAN59842.1| (hypothetical protein VITISV_030358 [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 3   SKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSDSRNGEISEGKNGFETVGSSANMTPL 62
           S+ H+++ G   +   E EE  E++TLQLFPL S   N  I+E +        + N+TP 
Sbjct: 279 SEGHNHLAGVGADHSNE-EEGGESQTLQLFPLRSGBGNENINEKEGEISVAAMNTNLTPH 338

Query: 63  QFFEFLPLKN 73
           QFFEFLPLKN
Sbjct: 339 QFFEFLPLKN 347

[Close]
BLAST of CmaCh13G009940 vs. NCBI nr
Match: gi|731426629|ref|XP_010663679.1| (PREDICTED: WUSCHEL-related homeobox 1 [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 3   SKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSDSRNGEISEGKNGFETVGSSANMTPL 62
           S+ H+++ G   +   E EE  E++TLQLFPL S   N  I+E +        + N+TP 
Sbjct: 279 SEGHNHLAGVGADHSNE-EEGGESQTLQLFPLRSGDGNENINEKEGEISVAAMNTNLTPH 338

Query: 63  QFFEFLPLKN 73
           QFFEFLPLKN
Sbjct: 339 QFFEFLPLKN 347

The following BLAST results are available for this feature:
BLAST of CmaCh13G009940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G009940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVV6_CUCSA2.4e-1160.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042780 PE=4 SV=1[more]
A5AY44_VITVI3.9e-0644.29Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030358 PE=4 SV=1[more]
F6GSK3_VITVI3.9e-0644.29Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02460 PE=4 SV=... [more]
BLAST of CmaCh13G009940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh13G009940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209075|gb|KGN64171.1|3.4e-1160.22hypothetical protein Csa_1G042780 [Cucumis sativus][more]
gi|659066838|ref|XP_008463696.1|1.7e-1058.06PREDICTED: WUSCHEL-related homeobox 1-like [Cucumis melo][more]
gi|147818819|emb|CAN59842.1|5.6e-0644.29hypothetical protein VITISV_030358 [Vitis vinifera][more]
gi|731426629|ref|XP_010663679.1|5.6e-0644.29PREDICTED: WUSCHEL-related homeobox 1 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G009940.1CmaCh13G009940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G009940Cucurbita pepo (Zucchini)cmacpeB213
CmaCh13G009940Cucurbita pepo (Zucchini)cmacpeB228
CmaCh13G009940Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G009940Cucurbita pepo (Zucchini)cmacpeB246
CmaCh13G009940Bottle gourd (USVL1VR-Ls)cmalsiB208
CmaCh13G009940Bottle gourd (USVL1VR-Ls)cmalsiB218
CmaCh13G009940Cucumber (Gy14) v2cgybcmaB073
CmaCh13G009940Cucumber (Gy14) v2cgybcmaB077
CmaCh13G009940Melon (DHL92) v3.6.1cmamedB214
CmaCh13G009940Melon (DHL92) v3.6.1cmamedB227
CmaCh13G009940Silver-seed gourdcarcmaB0540
CmaCh13G009940Silver-seed gourdcarcmaB0690
CmaCh13G009940Silver-seed gourdcarcmaB0832
CmaCh13G009940Silver-seed gourdcarcmaB1094
CmaCh13G009940Cucumber (Chinese Long) v3cmacucB0248
CmaCh13G009940Cucumber (Chinese Long) v3cmacucB0252
CmaCh13G009940Watermelon (97103) v2cmawmbB233
CmaCh13G009940Watermelon (97103) v2cmawmbB240
CmaCh13G009940Wax gourdcmawgoB0266
CmaCh13G009940Wax gourdcmawgoB0288
CmaCh13G009940Cucurbita maxima (Rimu)cmacmaB093
CmaCh13G009940Cucurbita maxima (Rimu)cmacmaB127
CmaCh13G009940Cucurbita maxima (Rimu)cmacmaB217
CmaCh13G009940Cucumber (Gy14) v1cgycmaB0265
CmaCh13G009940Cucumber (Gy14) v1cgycmaB0317
CmaCh13G009940Cucurbita moschata (Rifu)cmacmoB211
CmaCh13G009940Cucurbita moschata (Rifu)cmacmoB215
CmaCh13G009940Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G009940Cucurbita moschata (Rifu)cmacmoB224
CmaCh13G009940Wild cucumber (PI 183967)cmacpiB218
CmaCh13G009940Wild cucumber (PI 183967)cmacpiB223
CmaCh13G009940Cucumber (Chinese Long) v2cmacuB217
CmaCh13G009940Cucumber (Chinese Long) v2cmacuB221
CmaCh13G009940Melon (DHL92) v3.5.1cmameB193
CmaCh13G009940Melon (DHL92) v3.5.1cmameB207
CmaCh13G009940Watermelon (Charleston Gray)cmawcgB202
CmaCh13G009940Watermelon (Charleston Gray)cmawcgB208
CmaCh13G009940Watermelon (97103) v1cmawmB206
CmaCh13G009940Watermelon (97103) v1cmawmB214