CmaCh13G009480 (gene) Cucurbita maxima (Rimu)

NameCmaCh13G009480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr13 : 7442479 .. 7448030 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAAGAAGTGTCATCTCTTGGAATTCTATGATTGCAGCTTATTCTCGCGGTTTTCGGGTTAATGAAGCGTTAAAGCTACGCCTGTGGCAAATTCTCTCATCCAAATGTATGTAAACCTTGGTCAAATTCATGCAGCTTGCTCTGTTTTTTATGCCACCAGCGACGAGATAGTAATTTTTTTTATGCCACCAGCAATGGTTACCTGAGATCATTTGATCTTAGAGAGAAAACAAGTGTCAGCAAGAACGCTGGCCCCAAAGGAGTGGATTGTTAGATCCACGTTGGTTAAAGAGGAGACCGAAACATTCTTTATAAGGACATGAAACTTTTAAGGGAACCCAAAAGGGAGAACATAAAGAGACAATATCTACTAGCAGTAAGTTTGACAGTTACAAATAGTATCAAAGCTGGACACTTTCGGGAAAGTATAAAGAAGACAATATCTACTAGCAGTGAGTTTGATGGTTACAAATGGTATCAAACCCAAACACCGGGCCAGTGAGTTGACTGAGCCTTAAAAGGGGGTGGATAATGAGATCCCACTTCGGTTAGAGAAGAAAATGAAGCATTTTGTATAAGCTAGAAACCTTTTCCTAGCAGACGCATTTTGTCGGCTATTTAAAAAGAAAGGGAGCCCAAAAGGAAAAGTCTACAGGCATTGACAGCAGGATTTGATTGCTTGACGAATTAGGAAGGTTGAAGTTACTCCAACAATCTGTGATCATTCATGTAGCAGATAAAATTGAGATTGTTTCTAGTACATCTACAAAAGTTTCTTGGAATTTTGAAATATTTAATAAACTGAAGATGATTCTCATATGTTCCTCTACAAAAGATTGATTCTTATATTTAAGAAACTGTACTCAGGACTGGACAACAAATAAAATTTGAATTACCTCTGTTCCACCTGATTCAAGCTCTCCACTATTGAGAAAGAAAAACAAGGCTTGCAAATTTGTTCTCTGGTAGAAACAAAGAACTGTGATTTGCACTCAGAATCAGATATACATTTTGTGCCGCCCATCTTGGAATATATTGAGGTTTCATAGTTTATGGCGCTCGCATCTTCTCAACAATGTTCCTGCTCTTTTCTTCAATGGTTCGTCTCTTTTCTTCTAGTTTCTCCCCCATCTTCTTCCCTATTTCTAGCATTCTTGCTCTTCTTCCTGTTCTCCTTGGCGGCTTTGGATCATCTTCCTCAGCGTTATGATTTTCCTGCCCAGATGAGCTTATAGAACTAGATGGTGATTCATTCTCCTGCGCGTCTACTCTATTTTGCTGCAAATTTTCTATTTCTTTGTCATTTTCTAATAAAGGGATTTTCATTTCATCTTCATCCAGTGCCTTACTTGAAGCTGGAGTTGGATTACCAGTGCTTGATGAAGCCTTTGATGCATTCATCAAGTCAGTGTGTGGCTGAGAAGGCTCGTTCTGAGGTATTTTATGCTCAATGGAGATGGTTTTACTGGCTTCAGATCTATTTTTTGGCTCAACAGGATTGGATCTTTGATTTTCACATGAAGATTTGTTATCAGAAGCACCTTGGTTGAACCAGATCAATGGTGCAACGTCCCGTGGAACCCAGTCGTCCTTCTCGGCCATCATGAATGGAATGTATATACTTTCACTGTTGGGGAGCACTAAAGTATCCTTGATCACTGCCTGCATAGTAGGTAACATTAGCAGAATATCAGCAGGATTTACACAACATCGTTTAATTTCATGCTGCATCTTAATAACATGTAATGAGTTTGTGTTCATGCTGCTGCATTTTAACCTTTCAGACACTGGATTACACACTTGATCAAGAGGATTCAGGCAGCGTTTTAGTTTTAAACATGGTTACGACGATCATGGAAAGCGAGCGCTAACAAATTCATATACTTGAGGTATGATTTTCTATTTGAAACCATCATTCGTGATTCTTTGTTATCACTGCTTCCTTCATTTTAATATGAAACAAACATATCACGACACGAGTTTCTTTGGCATCCATCACAAGCTAACGTGCTAGCATGAGGCTTGTGCGATGCCAACGATCAAAGAGATACAATATTAATAGCCTTCTGAGAGGATTAACTGTCCCAAAATCTACCCATTATGGACGGATTCTTAAAAATTAAGCCTACTGAACCAACTTCATGTTAGGAAACAAATCTCCATACCTTAAGCCGGTTGTTCAAAAACTGAGCAACATGTGCACTAGATATCTTATGGTCCCCAAACGATGATTCCAAGCGCAACTCCAAATATGGCATGGATGTAAAACTGTACCATAGCTGATCAGAAGGAGGCGGTTTTATATGTACCCGCAGCGTCCCTCGGAGAGATGCAACCTTTAGTACCAAAGAGATCGGCACCTATAAATTCAAAAACAAATGAGAAAATTATGAAAGGGGCTAACTCCGTGCATCCAAGACATCTAACAATGCCTCTTTAGTTTCAGGATACACACTTAAACTTAATTATCAAACACGAAGGTCGACGAACCTGAGAAACCTGTTTAGCAATAGAATTCATTAGAGATTTCCACTTGGATCCACTAGAGCATGAGGACGTGGGGTTCTTACTGTTTTCCGACCCACCTGCAACCGAACATTGAACTACTGAGATTATAATTGAACCTAAAATCAGAATTCTATCTCTGATCTTATGCATTTAGACTTTGTGCAGGCAACAAAAAGAATTATAGGTTACCAGTTCATGAGGATAGAACATATGAAAACCATTTAATGGTTAGTTGCTCACCTTCGTCGTTCTGTTCTGTTCCTTCAGAGGTACTGAACTGCTTTCCAAGATAAACTTCTAGAAATGAAGAGACCTCCCCAACATCACTGGAATCAGATTTAGAGTCTACTGCGCTTTTTTGAAGATCTAATTCATGAACTTCAATTCTAGTTTCGATATCTAAGGCAAAGCCTCCAGAGTATTCAAAGTCAACCTCAAAGGCCCATACCTCACTCAATTCAAAGGGAAGAACCCTTATAGTATTGATATTGGGCGGGAGGTTTCCAGGATGAACTTTAGTACAGCTAACTTCGCGAATGTAACTTGGAGTCCTCATGTTCGACAACATCCTCTGCCATGACAAACAAAAGTATTCATCAAACAGTAAGAGAACGTATGTAACATCCCAAACCCACAGCTAGCAGATCTTGTCCTCTTTAGGCTTTTCCTTTCGGGCTTCCCCTCAAAGTTTTTAAAACGCGTCTGCTAGGTAAAGGTTTCCACACCCTTACAAAGGGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATGTAATGATAGGAGTATCAACATTCTCAAAAAAAAAAAGAAAGGATCTCTTGGGGAAAAAAATGAACCTGAATTCGATCGTGCAAGGATTTCATTAGCCCTTCATTGCTTTTGGCATCAAAAAAGAATCTTGACATCAACAAATTCCAACTAAGTGTTCCATCATCAGTCAAGAATCTGTCATCAGAATCTGCCTCAGAAATAACAGAGGCATGACCATGGTGGCTTCCTGAGTGAACCATTGATGGTGTTGCCATATCTTCCTCAAATAAACTTTTAGTACTCTGCGCCTTTGGAATTCCCTTCCCTAAGCCCGATGACGAAACAAAACCTGGACTCGGATGAAACCTATCACTAAAGTTTTTTTCTTCACGCAAAGAAGAAGAAGAAAATTTTACTTTATAATCTGAAGCAGCCTTAGAAGTCTTCTTTGCCAGTTTTTTGAAAAATAGCTGAACCTTCGAAGGAGCGTTAGGCTTGATATCCTTATCAGTAGCTTCAGAATAGTACCCTGCAGAGGGCTTCATAAATGAAGGATACCCAGTTCTTAAAGAAGAGGTATAACTATGGAACTCTTTCTGTAAATTAGCAAACCACTGCAGTCTTTCTTTGTCAACACATGAAGCTAGACGGAGGGCTTTACACCATGATTCCTTCTCCCAGGAAGTTTCAAGAAAAATGAAGATTGTTTTACTTTCATTATAAACTATGGAGGTTCTGTTTTCCAATTTTAAAGGGAACCTTTTCACCCTGAAATACCAATAATCAAATTATAAAAACATGGCGTCCGGAATTCAGAAGAACAATAAAAAAAACACGAAACTTAAGTTCTTATTATGTACCCTCAAATTCAAATTCTATACCGATAACAAGTATCACACTCTAACACATAGCAGAAAAGATTTCCAACATTGATACACATCGAAACCATTAAGGTACCAAATAAATTCAAACAGAGTAACAAAACAAGTATTCTGCACCTTCCACACATCAAGAATATCAACATTTTAATAGCTATAGATTGTAGGGTCGATTTAGAGGAATGAACAAGAAACAAGCAACAAGAACACGCAGCATGAGAAAATTTAAGAACAGTATACACAGCTAATTTTACTTGTATGCATAGCCACGAGCTCCTATAAATTCAACCATTTCTTATCAGATCATAGCAAGGAAAAGAAAAGTTATTGAAAGAATAATGGGCAGGGTTGAAGCTTTTAGAATTGAATTCAGCATCTCAATAAGTAAGAATAAAAGAATAAAATGTCTGTAAGCTAAAAATTTAGAGCATGAAGAACATCATCATATGCTAGAAAGAACTTTTTATATTGAAATGAAATATGAAAGAAGATACCATTTTCTTGAAGGCAAGGTTGCTGCTGAAACGGCTTCAATGGTGCAGCCATTTAATTGAATTGTTTTCGTATTACCATCTGATTCTGATATAATTAACGTCTGGTCCTTGATTCTTGCATACTTTTTTACAGGAGTTACCTCTAAGAAATCTTTCCCTTTCTTTTGTTCTCCAGGTGCTTTCTCTATCATATCTTCTAGCACATTTGATTCTAATATCCATACCCAACCCTGCCAAGCAAAGAGATCATATCGCAAGAACAAAATCCAGAATTATTAGTCCATTTAGTAAACCCAAGAACAACCAACAATACGATTTCAATCAATTTTTTGCGTGTTTGAACTCCGAAACGAAACAAGAACACATAAAAACTGAATTGAATACCTGCTTGTTGGAAAGAAATTCAAGGGATTGAAGAGGATCTGGCTCGGATTGCTCTAGCTTGGCATTGGCTATCGCTAAGTCCTTTTGAGACCTCTTGCTCAACTTGTTCAAAATGATATAGACTGCAAGAGCCTCCGCCGCAAGGATTGCCACAACCCCAAAACCAAAACCGAATAGAAACGTCAGAATCAAGAGGGACCCCATTTCAATTGTTCGCAATCACCAACGAACTCTAACCATGAAATCTCACGAAATCGAGTTGCAGGTACTGGAAAAAGGGATTGGGAATGGGGGGAAAGTGGAGAAAATGAACGAACAATGCGACCCCTAAACCCCAAAAGGAAAAATATCGAAAGAATCTGAATCGGAAACTCTGCTTGGGTCCAGCTTAGTGCCAAGTTAGATGGAAGTAAAAGTAATCGAAATCAACGGAGTGTAACGCTTGAGATTCTTCTTCTTTTTCACTAATTACAGAGAGCAACAGCCACAAACACGGAGAAGAAAAGAATTCTTTCAGTTTCATAG

mRNA sequence

ATGTCTACAAGAAGTGTCATCTCTTGGAATTCTATGATTGCAGCTTATTCTCGCGGTTTTCGGGTTAATGAAGCGTTAAAGCTACGCCTGTGGCAAATTCTCTCATCCAAATTTTCTCCCCCATCTTCTTCCCTATTTCTAGCATTCTTGCTCTTCTTCCTGTTCTCCTTGGCGGCTTTGGATCATCTTCCTCAGCTGCCTTACTTGAAGCTGGAGTTGGATTACCAGTGCTTGATGAAGCCTTTGATGCATTCATCAAGTCAGTGTGTGGCTGAGAAGGCTCGTTCTGAGATCAATGGTGCAACGTCCCGTGGAACCCAGTCGTCCTTCTCGGCCATCATGAATGGAATGTATATACTTTCACTGTTGGGGAGCACTAAAGTATCCTTGATCACTGCCTGCATAGTAGGCAAAGCCTCCAGAGTATTCAAAGTCAACCTCAAAGGCCCATACCTCACTCAATTCAAAGGGAAGAACCCTTATAGTATTGATATTGGGCGGGAGGTTTCCAGGATGAACTTTAGTACAGCTAACTTCGCGAATACTGCAAGAGCCTCCGCCGCAAGGATTGCCACAACCCCAAAACCAAAACCGAATAGAAACGTCAGAATCAAGAGGGACCCCATTTCAATTGTTCGCAATCACCAACGAACTCTAACCATGAAATCTCACGAAATCGAGTTGCAGAGAGCAACAGCCACAAACACGGAGAAGAAAAGAATTCTTTCAGTTTCATAG

Coding sequence (CDS)

ATGTCTACAAGAAGTGTCATCTCTTGGAATTCTATGATTGCAGCTTATTCTCGCGGTTTTCGGGTTAATGAAGCGTTAAAGCTACGCCTGTGGCAAATTCTCTCATCCAAATTTTCTCCCCCATCTTCTTCCCTATTTCTAGCATTCTTGCTCTTCTTCCTGTTCTCCTTGGCGGCTTTGGATCATCTTCCTCAGCTGCCTTACTTGAAGCTGGAGTTGGATTACCAGTGCTTGATGAAGCCTTTGATGCATTCATCAAGTCAGTGTGTGGCTGAGAAGGCTCGTTCTGAGATCAATGGTGCAACGTCCCGTGGAACCCAGTCGTCCTTCTCGGCCATCATGAATGGAATGTATATACTTTCACTGTTGGGGAGCACTAAAGTATCCTTGATCACTGCCTGCATAGTAGGCAAAGCCTCCAGAGTATTCAAAGTCAACCTCAAAGGCCCATACCTCACTCAATTCAAAGGGAAGAACCCTTATAGTATTGATATTGGGCGGGAGGTTTCCAGGATGAACTTTAGTACAGCTAACTTCGCGAATACTGCAAGAGCCTCCGCCGCAAGGATTGCCACAACCCCAAAACCAAAACCGAATAGAAACGTCAGAATCAAGAGGGACCCCATTTCAATTGTTCGCAATCACCAACGAACTCTAACCATGAAATCTCACGAAATCGAGTTGCAGAGAGCAACAGCCACAAACACGGAGAAGAAAAGAATTCTTTCAGTTTCATAG

Protein sequence

MSTRSVISWNSMIAAYSRGFRVNEALKLRLWQILSSKFSPPSSSLFLAFLLFFLFSLAALDHLPQLPYLKLELDYQCLMKPLMHSSSQCVAEKARSEINGATSRGTQSSFSAIMNGMYILSLLGSTKVSLITACIVGKASRVFKVNLKGPYLTQFKGKNPYSIDIGREVSRMNFSTANFANTARASAARIATTPKPKPNRNVRIKRDPISIVRNHQRTLTMKSHEIELQRATATNTEKKRILSVS
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G009480.1CmaCh13G009480.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 5..40
score: 9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G009480CmoCh13G009790Cucurbita moschata (Rifu)cmacmoB218
The following gene(s) are paralogous to this gene:

None