CmaCh13G008960 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G008960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein, putative
LocationCma_Chr13 : 7215118 .. 7215525 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGCTGGCGGTGGGGATGGGTGTGTTGGTGGTGTGTACTGTGGGAATGGCTTTGAGAGGAGGAGGAGAAGGGGTTGGGAGAAGTAATAATGGTAATGATTTAGATTTGGAGAAGCTTGTTATGACTCAAAAGAGGGGAAAACAGAGTGTTTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAATTGGGGGAGACATGCAGATTGCTGCCGAATTGCAGCCATACCTTCCATGTCCGTTGCATTGATTCTTGGCTTTTGAAGACACCCATTTGCCCCATTTGCAGAACTTCGGCTGCTCTTCCAAAAATTGCCTTGGTTTCGGCAGACATGAGGAGAGGTGGCCGGGAGGAAGTTGAAGATCAGCGCCGCCGTCTGTAA

mRNA sequence

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGCTGGCGGTGGGGATGGGTGTGTTGGTGGTGTGTACTGTGGGAATGGCTTTGAGAGGAGGAGGAGAAGGGGTTGGGAGAAGTAATAATGGTAATGATTTAGATTTGGAGAAGCTTGTTATGACTCAAAAGAGGGGAAAACAGAGTGTTTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAATTGGGGGAGACATGCAGATTGCTGCCGAATTGCAGCCATACCTTCCATGTCCGTTGCATTGATTCTTGGCTTTTGAAGACACCCATTTGCCCCATTTGCAGAACTTCGGCTGCTCTTCCAAAAATTGCCTTGGTTTCGGCAGACATGAGGAGAGGTGGCCGGGAGGAAGTTGAAGATCAGCGCCGCCGTCTGTAA

Coding sequence (CDS)

ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGCTGGCGGTGGGGATGGGTGTGTTGGTGGTGTGTACTGTGGGAATGGCTTTGAGAGGAGGAGGAGAAGGGGTTGGGAGAAGTAATAATGGTAATGATTTAGATTTGGAGAAGCTTGTTATGACTCAAAAGAGGGGAAAACAGAGTGTTTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAATTGGGGGAGACATGCAGATTGCTGCCGAATTGCAGCCATACCTTCCATGTCCGTTGCATTGATTCTTGGCTTTTGAAGACACCCATTTGCCCCATTTGCAGAACTTCGGCTGCTCTTCCAAAAATTGCCTTGGTTTCGGCAGACATGAGGAGAGGTGGCCGGGAGGAAGTTGAAGATCAGCGCCGCCGTCTGTAA

Protein sequence

MVMEIVVSAVLLAVGMGVLVVCTVGMALRGGGEGVGRSNNGNDLDLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAALPKIALVSADMRRGGREEVEDQRRRL
Homology
[Close]
BLAST of CmaCh13G008960 vs. Swiss-Prot
Match: ATL56_ARATH (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAAL 111
           +CVVC + F+ G+ CR LP C H FH +C+D+WLLK   CPICR    L
Sbjct: 109 DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 157

[Close]
BLAST of CmaCh13G008960 vs. Swiss-Prot
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 1 

Query: 50  VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAA 109
           V TQK GK   LEC +CL  F+  ET RLLP C H FH  CID+WL     CP+CR + A
Sbjct: 116 VKTQKLGKGE-LECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]
BLAST of CmaCh13G008960 vs. Swiss-Prot
Match: NIPL2_ARATH (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-11
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 32  GEGVGRSNNGNDL-DLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRC 91
           GE   R  +G+ L  L   +M+ +  ++ V  C +CL+  K GE  R LP C HTFH+ C
Sbjct: 144 GELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVC 203

Query: 92  IDSWLLKTPICPICR 106
           +D WL++   CPICR
Sbjct: 204 VDKWLIRHGSCPICR 218

[Close]
BLAST of CmaCh13G008960 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-11
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 57  KQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTS 108
           K    EC++CL  F  GET R+LP C+H FHV+CID+WLL    CP CR S
Sbjct: 107 KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQS 157

[Close]
BLAST of CmaCh13G008960 vs. Swiss-Prot
Match: ATL14_ARATH (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-11
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 

Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICR 106
           +CVVC++ F+ G+ CR LP C H FH +C+D WL+K   CPICR
Sbjct: 114 DCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]
BLAST of CmaCh13G008960 vs. TrEMBL
Match: A0A061FV20_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_012040 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-22
Identity = 72/144 (50.00%), Postives = 90/144 (62.50%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLVV---CTVGMALRGGGEGVG----RSNNG----NDLDLEKL 60
           MVMEI  S VLL VG+ VLVV   C VG A R   E  G     SNNG    +D DL+KL
Sbjct: 1   MVMEIAFSVVLLFVGVAVLVVIHVCIVGRAFRREYEDGGLVQISSNNGAKKMSDEDLKKL 60

Query: 61  VMTQKRGKQ---SVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                +  +   S ++CVVCLE+F+ G+ C+LLPNC H+FH +CIDSWLLKT ICPICRT
Sbjct: 61  PSFDYKAAEKGSSPVDCVVCLENFRKGDKCKLLPNCRHSFHAQCIDSWLLKTSICPICRT 120

Query: 121 SAALPKIALVSADMRR-GGREEVE 130
           SA   K+ ++  + R     +EVE
Sbjct: 121 SADPSKVGMILGEERGVSSHDEVE 144

[Close]
BLAST of CmaCh13G008960 vs. TrEMBL
Match: W9RES1_9ROSA (RING-H2 finger protein ATL80 OS=Morus notabilis GN=L484_014996 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-22
Identity = 63/138 (45.65%), Postives = 83/138 (60.14%), Query Frame = 1 

Query: 3   MEIVVSAVLLAVGMGVLVV---CTVGMALRGGGEGVGRSNNGNDL-------DLEKLVMT 62
           MEIV+S +LL VG+ VLVV   C VG A   G +G   +NN N++         E L M 
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLKMI 60

Query: 63  -------QKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICR 122
                      + S ++C VCLE+FK G+ CRLLP+C+H+FH +CIDSWLL+TP+CPICR
Sbjct: 61  PCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCPICR 120

Query: 123 TSAALPKIALVSADMRRG 124
           T A   KI +V  +   G
Sbjct: 121 TCAKPAKIGVVLGEEASG 138

[Close]
BLAST of CmaCh13G008960 vs. TrEMBL
Match: V4TSX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022743mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-22
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLVV---CTVGMALRGGGEGVGRSNNGNDL----DLEKLVMTQ 60
           MVMEI++S  LL VG+  LVV   C VG A R G E  G +  G  +    DL+++   +
Sbjct: 1   MVMEILISLTLLFVGIAALVVIHVCVVGRAFRRGYEQSGFAQGGFKMISSDDLKQIPCFE 60

Query: 61  KRGK----QSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAA 120
            +       S ++CVVCLE+F++G+ CRLLPNC H+FH +CIDSWLLKTPICPICRT  +
Sbjct: 61  YKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120

[Close]
BLAST of CmaCh13G008960 vs. TrEMBL
Match: A0A067FQW1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032328mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-22
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLVV---CTVGMALRGGGEGVGRSNNGNDL----DLEKLVMTQ 60
           MVMEI++S  LL VG+  LVV   C VG A R G E  G +  G  +    DL+++   +
Sbjct: 1   MVMEILISLTLLFVGIAALVVIHVCVVGRAFRRGYEQSGFAQGGFKMISSDDLKQIPCFE 60

Query: 61  KRGK----QSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAA 120
            +       S ++CVVCLE+F++G+ CRLLPNC H+FH +CIDSWLLKTPICPICRT  +
Sbjct: 61  YKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120

[Close]
BLAST of CmaCh13G008960 vs. TrEMBL
Match: V7B0U4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G179700g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 1 

Query: 3   MEIVVSAVLLAVGMGVLVV---CTVGMALRG-------------------GGEGVGRSNN 62
           MEIV+S ++L VG+ +LVV   C VG A RG                   GG+ +G   N
Sbjct: 1   MEIVISLIILFVGIAILVVIHVCIVGRAFRGDTNEGNQQGQNMNRMKRMLGGDNIGDLKN 60

Query: 63  GNDLDLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPI 107
                 E+   + +R   S+++CVVCL+SFK+G+ CRLLPNC+HTFHV CIDSW+L TPI
Sbjct: 61  LPCFVYEEAAASAERRGCSLVDCVVCLDSFKVGDVCRLLPNCNHTFHVHCIDSWILHTPI 120

[Close]
BLAST of CmaCh13G008960 vs. TAIR10
Match: AT2G18670.1 (AT2G18670.1 RING/U-box superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-13
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAAL 111
           +CVVC + F+ G+ CR LP C H FH +C+D+WLLK   CPICR    L
Sbjct: 109 DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 157

[Close]
BLAST of CmaCh13G008960 vs. TAIR10
Match: AT3G05200.1 (AT3G05200.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 1 

Query: 50  VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAA 109
           V TQK GK   LEC +CL  F+  ET RLLP C H FH  CID+WL     CP+CR + A
Sbjct: 116 VKTQKLGKGE-LECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]
BLAST of CmaCh13G008960 vs. TAIR10
Match: AT1G74410.1 (AT1G74410.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1 

Query: 32  GEGVGRSNNGNDL-DLEKLVMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRC 91
           GE   R  +G+ L  L   +M+ +  ++ V  C +CL+  K GE  R LP C HTFH+ C
Sbjct: 144 GELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVC 203

Query: 92  IDSWLLKTPICPICR 106
           +D WL++   CPICR
Sbjct: 204 VDKWLIRHGSCPICR 218

[Close]
BLAST of CmaCh13G008960 vs. TAIR10
Match: AT5G05280.1 (AT5G05280.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 57  KQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTS 108
           K    EC++CL  F  GET R+LP C+H FHV+CID+WLL    CP CR S
Sbjct: 107 KMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQS 157

[Close]
BLAST of CmaCh13G008960 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-12
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 62  ECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRTSAALPKIALVSADMR 121
           EC++CL  F+ GE  R+LP C+H FHVRCID+WLL    CP CR S  L + + ++   R
Sbjct: 113 ECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRR 172

[Close]
BLAST of CmaCh13G008960 vs. NCBI nr
Match: gi|659067215|ref|XP_008438260.1| (PREDICTED: putative RING-H2 finger protein ATL61 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 79/134 (58.96%), Postives = 93/134 (69.40%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLVV---CTVGMALRGGGEGVGRSNNGNDL------------D 60
           MVMEIVVSAVLL VG+ VLVV   C VG ALR   EG+ RS+N N+             D
Sbjct: 1   MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALRE--EGIWRSDNNNNNSNSYGMKRFSNED 60

Query: 61  LEKLVMTQKRGKQS--VLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPI 117
           LEK+   +   K     +ECV+CLE+FKLGE CRLLPNC+H+FHV+CIDSWLL  PICPI
Sbjct: 61  LEKIPCYEYNNKMEDFQMECVICLENFKLGERCRLLPNCNHSFHVQCIDSWLLNKPICPI 120

[Close]
BLAST of CmaCh13G008960 vs. NCBI nr
Match: gi|731419174|ref|XP_003633831.2| (PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGG---GEGVGRSNNGNDL----DLEKL- 60
           +VM IV+S +LL +G+GVLV   VC VG A RGG   G  V R N  +      DL+KL 
Sbjct: 13  IVMAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGNGRMVERGNPRSTSMSLDDLDKLP 72

Query: 61  ---VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                 +++G  S ++C VCL++FK+G+ CRLLP C+H+FH +C+DSWLLKTPICPICRT
Sbjct: 73  CFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPICRT 132

[Close]
BLAST of CmaCh13G008960 vs. NCBI nr
Match: gi|731425262|ref|XP_003634293.2| (PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera])

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-23
Identity = 69/133 (51.88%), Postives = 86/133 (64.66%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLVV---CTVGMALR---GGGEGVGRSNNG----NDLDLEKL- 60
           MVMEIVVS VLL VG+ VL+V   C VG A R   G G  V R  +G    +  +L+KL 
Sbjct: 1   MVMEIVVSLVLLFVGIAVLIVIHVCIVGRAFRRAYGNGAMVQRGGSGGLGMSQDELKKLP 60

Query: 61  -----VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPIC 118
                 +  ++   S ++C VCLE+F+ G+ CRLLPNC H FH +CIDSWLLKTPICPIC
Sbjct: 61  CFEYKAVALEKASNSPVDCAVCLENFRKGDKCRLLPNCKHFFHSQCIDSWLLKTPICPIC 120

[Close]
BLAST of CmaCh13G008960 vs. NCBI nr
Match: gi|1009124676|ref|XP_015879199.1| (PREDICTED: UDP-glycosyltransferase 90A1-like [Ziziphus jujuba])

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 70/141 (49.65%), Postives = 88/141 (62.41%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLV---VCTVGMALRGGGEGVG---RSNNGNDL----DLEKL- 60
           MVM I++S VLL VG+G+LV   VC VG A R G   V    R++ GN      DLEKL 
Sbjct: 14  MVMAIILSVVLLFVGIGLLVIVHVCIVGRAFRSGFGDVSVVERASGGNRSMSRDDLEKLP 73

Query: 61  ---VMTQKRGKQSVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
               +T+     S ++C VCLE+FK+GE CRLLP C H+FH +C+D WLL+TPICPICR+
Sbjct: 74  CYDYITKDTANSSPVDCAVCLETFKMGEKCRLLPFCKHSFHAQCVDEWLLRTPICPICRS 133

Query: 121 SAALPKIALVSADMRRGGREE 128
                     SAD RRGG +E
Sbjct: 134 ----------SADSRRGGGDE 144

[Close]
BLAST of CmaCh13G008960 vs. NCBI nr
Match: gi|590663319|ref|XP_007036181.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-22
Identity = 72/144 (50.00%), Postives = 90/144 (62.50%), Query Frame = 1 

Query: 1   MVMEIVVSAVLLAVGMGVLVV---CTVGMALRGGGEGVG----RSNNG----NDLDLEKL 60
           MVMEI  S VLL VG+ VLVV   C VG A R   E  G     SNNG    +D DL+KL
Sbjct: 1   MVMEIAFSVVLLFVGVAVLVVIHVCIVGRAFRREYEDGGLVQISSNNGAKKMSDEDLKKL 60

Query: 61  VMTQKRGKQ---SVLECVVCLESFKLGETCRLLPNCSHTFHVRCIDSWLLKTPICPICRT 120
                +  +   S ++CVVCLE+F+ G+ C+LLPNC H+FH +CIDSWLLKT ICPICRT
Sbjct: 61  PSFDYKAAEKGSSPVDCVVCLENFRKGDKCKLLPNCRHSFHAQCIDSWLLKTSICPICRT 120

Query: 121 SAALPKIALVSADMRR-GGREEVE 130
           SA   K+ ++  + R     +EVE
Sbjct: 121 SADPSKVGMILGEERGVSSHDEVE 144

The following BLAST results are available for this feature:
BLAST of CmaCh13G008960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL56_ARATH1.6e-1153.06RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1[more]
ATL6_ARATH2.1e-1153.33E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2[more]
NIPL2_ARATH2.8e-1141.33NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24 PE=1 SV=2[more]
ATL73_ARATH3.6e-1154.90RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1[more]
ATL14_ARATH4.7e-1154.55RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2 SV=1[more]
BLAST of CmaCh13G008960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061FV20_THECC4.1e-2250.00RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_012040 PE=4 S... [more]
W9RES1_9ROSA5.4e-2245.65RING-H2 finger protein ATL80 OS=Morus notabilis GN=L484_014996 PE=4 SV=1[more]
V4TSX3_9ROSI7.1e-2247.69Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022743mg PE=4 SV=1[more]
A0A067FQW1_CITSI7.1e-2247.69Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032328mg PE=4 SV=1[more]
V7B0U4_PHAVU1.6e-2147.62Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G179700g PE=4 SV=1[more]
BLAST of CmaCh13G008960 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18670.19.1e-1353.06 RING/U-box superfamily protein[more]
AT3G05200.11.2e-1253.33 RING/U-box superfamily protein[more]
AT1G74410.11.6e-1241.33 RING/U-box superfamily protein[more]
AT5G05280.12.0e-1254.90 RING/U-box superfamily protein[more]
AT3G10910.12.7e-1248.33 RING/U-box superfamily protein[more]
BLAST of CmaCh13G008960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067215|ref|XP_008438260.1|2.1e-2758.96PREDICTED: putative RING-H2 finger protein ATL61 [Cucumis melo][more]
gi|731419174|ref|XP_003633831.2|1.1e-2351.13PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera][more]
gi|731425262|ref|XP_003634293.2|7.0e-2351.88PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera][more]
gi|1009124676|ref|XP_015879199.1|2.0e-2249.65PREDICTED: UDP-glycosyltransferase 90A1-like [Ziziphus jujuba][more]
gi|590663319|ref|XP_007036181.1|5.9e-2250.00RING/U-box superfamily protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G008960.1CmaCh13G008960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 62..105
score: 1.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 63..104
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 63..105
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 60..107
score: 2.7
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..133
score: 5.9
NoneNo IPR availablePANTHERPTHR14155:SF103SUBFAMILY NOT NAMEDcoord: 1..133
score: 5.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 62..110
score: 4.29

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G008960Cucsa.098350Cucumber (Gy14) v1cgycmaB0210
CmaCh13G008960MELO3C002255Melon (DHL92) v3.5.1cmameB193
CmaCh13G008960ClCG01G013040Watermelon (Charleston Gray)cmawcgB187
CmaCh13G008960Cp4.1LG09g10320Cucurbita pepo (Zucchini)cmacpeB213
CmaCh13G008960MELO3C002255.2Melon (DHL92) v3.6.1cmamedB214
CmaCh13G008960Cla97C01G012020Watermelon (97103) v2cmawmbB214
CmaCh13G008960Carg02293Silver-seed gourdcarcmaB0359
CmaCh13G008960Carg06718Silver-seed gourdcarcmaB0690
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh13G008960CmaCh18G001590Cucurbita maxima (Rimu)cmacmaB217
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G008960Melon (DHL92) v3.6.1cmamedB229
CmaCh13G008960Silver-seed gourdcarcmaB0862
CmaCh13G008960Silver-seed gourdcarcmaB1393
CmaCh13G008960Cucumber (Chinese Long) v3cmacucB0239
CmaCh13G008960Cucumber (Chinese Long) v3cmacucB0248
CmaCh13G008960Watermelon (97103) v2cmawmbB217
CmaCh13G008960Watermelon (97103) v2cmawmbB242
CmaCh13G008960Watermelon (97103) v2cmawmbB246
CmaCh13G008960Wax gourdcmawgoB0238
CmaCh13G008960Wax gourdcmawgoB0268
CmaCh13G008960Cucurbita maxima (Rimu)cmacmaB089
CmaCh13G008960Cucurbita maxima (Rimu)cmacmaB126
CmaCh13G008960Cucumber (Gy14) v1cgycmaB0582
CmaCh13G008960Cucurbita moschata (Rifu)cmacmoB208
CmaCh13G008960Cucurbita moschata (Rifu)cmacmoB213
CmaCh13G008960Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G008960Cucurbita moschata (Rifu)cmacmoB224
CmaCh13G008960Wild cucumber (PI 183967)cmacpiB211
CmaCh13G008960Wild cucumber (PI 183967)cmacpiB218
CmaCh13G008960Cucumber (Chinese Long) v2cmacuB209
CmaCh13G008960Cucumber (Chinese Long) v2cmacuB217
CmaCh13G008960Melon (DHL92) v3.5.1cmameB209
CmaCh13G008960Watermelon (Charleston Gray)cmawcgB210
CmaCh13G008960Watermelon (97103) v1cmawmB184
CmaCh13G008960Watermelon (97103) v1cmawmB200
CmaCh13G008960Watermelon (97103) v1cmawmB216
CmaCh13G008960Cucurbita pepo (Zucchini)cmacpeB230
CmaCh13G008960Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G008960Cucurbita pepo (Zucchini)cmacpeB248
CmaCh13G008960Bottle gourd (USVL1VR-Ls)cmalsiB208
CmaCh13G008960Bottle gourd (USVL1VR-Ls)cmalsiB220
CmaCh13G008960Cucumber (Gy14) v2cgybcmaB066
CmaCh13G008960Cucumber (Gy14) v2cgybcmaB073
CmaCh13G008960Cucumber (Gy14) v2cgybcmaB305
CmaCh13G008960Melon (DHL92) v3.6.1cmamedB205