CmaCh13G003130 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G003130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cma_Chr13 : 3455281 .. 3456630 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAGATGGAGGAAATGAAGGGGAGATCAATGAAGCTAGGTGGAGAGAAGCACAGATCGGAACAATTACTCGTTTGAATCAAGTTATTAGTACATTGACAGACCAGATGAAACAAATTGAAATAGCCTTAGGTAATCTTCAAGGGAGGGAAGTACTCTTGAATGAAGGAGTTGAAAATGAAGAAGATGACAATGTCACTCTTTTAGAGGGACATAGTCCTAGGGGAGGGAGAGATGTCGGTCGAGGGAGAGGAAGAGTCAGAAGAAGGGGTAGAGAAATTTTAGCATAAAAAAGAATTGAGAGGGAGTACCAGTATGAGAGAGAAAAAGAAAAAGGAGTCGGGGGAGTAAAGCTAAAAATTCCAACTTTCTATGGGAAATCTGATCCAGAGGAGTATTTGCAATATGAGAGAAAAATTGAGCATGTCTTCGATTGCAACAATTTCAGTGAAGAAAGAAAGTTGAAGCTTGTTGTGGCTGAATTTTGTGATTACGCCATTATATGGTGGACATCTTTGAAATCAAAGTGGAGGAGAAATTATGAAGAACCAATTGAAACGTGGGAGGAATTGAAGACATTAATGAGAAAAAGGTACATTCCTAAGCATTATTCTCGAGTACTCAAGCAAAAACTCTATACTTTACAACAGGGATCCAAAAGTGTTGAAGAATATTATAAAGAAATGGAGACCCTTATGAATAGAGCATGCATTGATGAAGATGAGGAAGATACAATGGCTAGATTTCTTGGTGGGTTAAACCGACAACTTGCTCATCAGGTGGATAGGCAAGCGTACTTTGATATGCAAGAATTGTTACACCTTGCTGTCAAAATCGAAGGGCAACTAGCTTGGGAGAAGGAGAACTCCAAGAGGTATGGTATTTCAAAGTCTACTACTTTCAACACTTGGAAAAAGAATGAAAATATTGAAAAGATAGATTTCAAAGTTGGAGGCAAGTATGATCTTGACAAAAAGAACAAAGTTGAGACCTCCAAGGGTAAAGAGAAAGCGGAGGAATATAAGAAGATTCGAGAAAGAAATAGAGACATCAAATGTTGGAAATGTCAAGGTAGTGGTCATCTTAGTTGTGATTGTCCTAACAAGAGAGTCATGATCATCAAGAATGGACAAGTTGTCACAGATAGTGAGGAAAGTGACCATGATGAGCTAGTTGAAGAGGAAATCCAAGAGCATGAGGAGGAGCTAGAAGATGGGAGTCGTTTGATACTTGTAACCAGAAGACTTCTTAAAACTCAAGTTACAAAGAATGATGTTGATCAAAGAGACAACCTATTTCACACAAGGTGTTTAGTTAAGGGGACTCCTTGTAGTCTTGTAAATTGA

mRNA sequence

ATGAACCAAGATGGAGGAAATGAAGGGGAGATCAATGAAGCTAGGTGGAGAGAAGCACAGATCGGAACAATTACTCGTTTGAATCAAGTTATTAGTACATTGACAGACCAGATGAAACAAATTGAAATAGCCTTAGAGGAGTATTTGCAATATGAGAGAAAAATTGAGCATGTCTTCGATTGCAACAATTTCAGTGAAGAAAGAAAGTTGAAGCTTGTTGTGGCTGAATTTTGTGATTACGCCATTATATGGTGGACATCTTTGAAATCAAAGTGGAGGAGAAATTATGAAGAACCAATTGAAACGTGGGAGGAATTGAAGACATTAATGAGAAAAAGGTACATTCCTAAGCATTATTCTCGAGTACTCAAGCAAAAACTCTATACTTTACAACAGGGATCCAAAAGTGTTGAAGAATATTATAAAGAAATGGAGACCCTTATGAATAGAGCATGCATTGATGAAGATGAGGAAGATACAATGGCTAGATTTCTTGGTGGGTTAAACCGACAACTTGCTCATCAGGTGGATAGGCAAGCGTACTTTGATATGCAAGAATTGTTACACCTTGCTGTCAAAATCGAAGGGCAACTAGCTTGGGAGAAGGAGAACTCCAAGAGGTATGGTATTTCAAAGTCTACTACTTTCAACACTTGGAAAAAGAATGAAAATATTGAAAAGATAGATTTCAAAGTTGGAGGCAAGTATGATCTTGACAAAAAGAACAAAGTTGAGACCTCCAAGGGTAAAGAGAAAGCGGAGGAATATAAGAAGATTCGAGAAAGAAATAGAGACATCAAATGTTGGAAATGTCAAGGTAGTGGTCATCTTAGTTGTGATTGTCCTAACAAGAGAGTCATGATCATCAAGAATGGACAAGTTGTCACAGATAGTGAGGAAAGTGACCATGATGAGCTAGTTGAAGAGGAAATCCAAGAGCATGAGGAGGAGCTAGAAGATGGGAGTCGTTTGATACTTGTAACCAGAAGACTTCTTAAAACTCAAGTTACAAAGAATGATGTTGATCAAAGAGACAACCTATTTCACACAAGGTGTTTAGTTAAGGGGACTCCTTGTAGTCTTGTAAATTGA

Coding sequence (CDS)

ATGAACCAAGATGGAGGAAATGAAGGGGAGATCAATGAAGCTAGGTGGAGAGAAGCACAGATCGGAACAATTACTCGTTTGAATCAAGTTATTAGTACATTGACAGACCAGATGAAACAAATTGAAATAGCCTTAGAGGAGTATTTGCAATATGAGAGAAAAATTGAGCATGTCTTCGATTGCAACAATTTCAGTGAAGAAAGAAAGTTGAAGCTTGTTGTGGCTGAATTTTGTGATTACGCCATTATATGGTGGACATCTTTGAAATCAAAGTGGAGGAGAAATTATGAAGAACCAATTGAAACGTGGGAGGAATTGAAGACATTAATGAGAAAAAGGTACATTCCTAAGCATTATTCTCGAGTACTCAAGCAAAAACTCTATACTTTACAACAGGGATCCAAAAGTGTTGAAGAATATTATAAAGAAATGGAGACCCTTATGAATAGAGCATGCATTGATGAAGATGAGGAAGATACAATGGCTAGATTTCTTGGTGGGTTAAACCGACAACTTGCTCATCAGGTGGATAGGCAAGCGTACTTTGATATGCAAGAATTGTTACACCTTGCTGTCAAAATCGAAGGGCAACTAGCTTGGGAGAAGGAGAACTCCAAGAGGTATGGTATTTCAAAGTCTACTACTTTCAACACTTGGAAAAAGAATGAAAATATTGAAAAGATAGATTTCAAAGTTGGAGGCAAGTATGATCTTGACAAAAAGAACAAAGTTGAGACCTCCAAGGGTAAAGAGAAAGCGGAGGAATATAAGAAGATTCGAGAAAGAAATAGAGACATCAAATGTTGGAAATGTCAAGGTAGTGGTCATCTTAGTTGTGATTGTCCTAACAAGAGAGTCATGATCATCAAGAATGGACAAGTTGTCACAGATAGTGAGGAAAGTGACCATGATGAGCTAGTTGAAGAGGAAATCCAAGAGCATGAGGAGGAGCTAGAAGATGGGAGTCGTTTGATACTTGTAACCAGAAGACTTCTTAAAACTCAAGTTACAAAGAATGATGTTGATCAAAGAGACAACCTATTTCACACAAGGTGTTTAGTTAAGGGGACTCCTTGTAGTCTTGTAAATTGA

Protein sequence

MNQDGGNEGEINEARWREAQIGTITRLNQVISTLTDQMKQIEIALEEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEELKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFLGGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENIEKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNKRVMIIKNGQVVTDSEESDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVDQRDNLFHTRCLVKGTPCSLVN

Homology

[Close]

BLAST of CmaCh13G003130 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.4e-61
Identity = 132/317 (41.64%), Postives = 195/317 (61.51%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           E YL++E K+E +F+C+N+S   K+++   EF +YA++WW  L    RR  E PI+TWEE
Sbjct: 86  EAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLIKDRRRYAERPIDTWEE 145

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K +MR+R++P +Y R L  KL  L QGSKSVEEY+KEME L  RA ++ED+E TMARFL
Sbjct: 146 MKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMARFL 205

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENI 225
            GLN  ++  V+   Y +M EL+H A+K+E QL   K  ++R     STTFN+    +  
Sbjct: 206 HGLNHDISDIVELHHYVEMDELVHQAIKVEQQLK-RKSQARR----NSTTFNSQSWKDKT 265

Query: 226 EKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNKR 285
           +K       +  ++ K K  TS     +         N+ +KC+KCQG GH++  CP KR
Sbjct: 266 KKEGASSSKEATVENKGKTITSSSSSVS--------TNKSVKCFKCQGQGHIASQCPTKR 325

Query: 286 VMIIKNGQVVTDSEESDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVDQRD 345
            M+++  + + + E+ D+DE       E EEE+  G   +L+ RR+L +Q+ + D  QR+
Sbjct: 326 TMLMEENEGIVEEEDGDYDE-------EFEEEIPSGD--LLMVRRMLGSQIKEEDTGQRE 380

Query: 346 NLFHTRCLVKGTPCSLV 363
           NLFHTRC V+G  CSL+
Sbjct: 386 NLFHTRCFVQGKVCSLI 380

[Close]

BLAST of CmaCh13G003130 vs. TrEMBL
Match: A0A151RW41_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.4e-61
Identity = 132/322 (40.99%), Postives = 204/322 (63.35%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           E Y+++E KIEH+F CNN+ EE+K+KL  AEF DYA++WW  LK +  RN E  +ETW E
Sbjct: 80  EAYVEWELKIEHIFTCNNYDEEQKVKLAAAEFSDYALVWWNKLKRERLRNEEPLVETWAE 139

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K LMRKRY+P  Y R +K KL  L QG+K VEEY+KE++ LM +A I+ED E TMARF+
Sbjct: 140 MKRLMRKRYVPASYVRDVKFKLQKLSQGTKRVEEYFKELDLLMMQANIEEDPELTMARFI 199

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFN----TWKK 225
            GLN  +   V+ Q + ++++LLH ++++E QL       KR  ++K ++ N    +WK 
Sbjct: 200 NGLNNDICDVVELQEFVEIEDLLHKSIQVEQQL-------KRKSVTKKSSSNYNSFSWKD 259

Query: 226 NENIEKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDC 285
               E           +   N   TS GK  ++  ++ +++++DIKC+KCQG GH + +C
Sbjct: 260 KNKKEVA---------VTLSNPASTSHGKSSSKTLEQPQKKSKDIKCFKCQGMGHYAYEC 319

Query: 286 PNKRVMIIK-NGQVVTDSEESDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKND 345
           P KR M++K NG   + S+ S+ +   E +I+E EE LE     +L+ RR++ +Q++  +
Sbjct: 320 PTKRTMVLKENGDYTSQSDVSEEE---EGDIEEEEEALEGD---LLMIRRMMGSQMSPLE 379

Query: 346 VDQRDNLFHTRCLVKGTPCSLV 363
           + QR+N+FHTRC + G  C ++
Sbjct: 380 ISQRENIFHTRCSINGKVCMVI 379

[Close]

BLAST of CmaCh13G003130 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.7e-60
Identity = 129/317 (40.69%), Postives = 193/317 (60.88%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           E YL++E K+E +F+C+N+S   K+++   EF +YA++WW  L    RR  E PI+TWEE
Sbjct: 86  EAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLTKDRRRYAERPIDTWEE 145

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K +MR+R++P +Y R L  KL  L QGSKSVEEY+KEME L  RA ++ED+E TMARFL
Sbjct: 146 MKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMARFL 205

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENI 225
            GLN  ++  V+   Y +M EL+H A+K+E QL   K  ++R     STTFN+    +  
Sbjct: 206 HGLNHDISDIVELHHYVEMDELVHQAIKVEQQLK-RKSQARR----NSTTFNSQSWKDKT 265

Query: 226 EKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNKR 285
           +K       +  ++ K K  TS     +         N+ +KC+KCQG GH++  CP KR
Sbjct: 266 KKEGASSSKEATVENKGKTITSSSSSVS--------TNKSVKCFKCQGQGHIASQCPTKR 325

Query: 286 VMIIKNGQVVTDSEESDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVDQRD 345
            M+++  + + + E+ D+D       +E  EE+  G   +L+ RR+L +Q+ + D  QR+
Sbjct: 326 TMLMEENEEIVEEEDGDYD-------KEFGEEIPSGD--LLMVRRMLGSQIKEEDTSQRE 380

Query: 346 NLFHTRCLVKGTPCSLV 363
           NLFH RC V+G  CSL+
Sbjct: 386 NLFHIRCFVQGKVCSLI 380

[Close]

BLAST of CmaCh13G003130 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.5e-60
Identity = 138/315 (43.81%), Postives = 206/315 (65.40%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           E YL++E+K+E +F+C+N+S+E+K+KL V EF +YAIIWW  L    RRNYE PIETWEE
Sbjct: 207 EVYLEWEKKVEFIFECHNYSKEKKVKLAVIEFTNYAIIWWDQLVMNKRRNYERPIETWEE 266

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K  MR+R++P HY R L QKL +L QG +SV++Y+KEME  M RA ++E+ E TMARFL
Sbjct: 267 MKATMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEENREATMARFL 326

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENI 225
            GLNR +A+ V+ Q Y ++++++H+A+K+E QL  ++  S +   S ++     +K+E +
Sbjct: 327 NGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKETRSFQNPGSSASWRXNGRKDEGV 386

Query: 226 EKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRE----RNRDIKCWKCQGSGHLSCDC 285
                          K+K E  K +++A    K +     RNRDIKC++C G GH++  C
Sbjct: 387 VF-------------KSKTEPPKRRDEAPNVNKGKNESQTRNRDIKCFRCLGVGHIASQC 446

Query: 286 PNKRVMIIK-NGQVVTDSEESDHDEL--VEEEIQEHEEELEDGSRLILVTRRLLKTQVTK 345
           PNKR MI   +G+V T+SEE D D++  +E+    + E   +G    LV RR L  QV +
Sbjct: 447 PNKRTMIAXVDGEVETESEEDD-DQMPSLEDACDNNVEYPVEGES--LVARRALSAQVKE 505

Query: 346 NDVD-QRDNLFHTRC 353
           +D++ QR+N+FHTRC
Sbjct: 507 DDMEQQRENIFHTRC 505

[Close]

BLAST of CmaCh13G003130 vs. TrEMBL
Match: A0A151R7Z9_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_040065 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 3.9e-59
Identity = 134/310 (43.23%), Postives = 191/310 (61.61%), Query Frame = 1


Query: 54  KIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEELKTLMRKR 113
           KIEHVF CN+++E +K+KL  AEF DYA+IWW   + + +R+ E  I+TW E++ +MRKR
Sbjct: 2   KIEHVFSCNDYTEAQKVKLAAAEFSDYALIWWNKYQKEMQRDEEREIDTWAEMRRVMRKR 61

Query: 114 YIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFLGGLNRQLA 173
           Y+P  YSR L+ KL  L QGS +VEEYYKEME  + RACI+E+ E TM RFL GLN  + 
Sbjct: 62  YVPTSYSRTLRLKLQKLTQGSMTVEEYYKEMEMALMRACIEEENEATMVRFLNGLNTDIR 121

Query: 174 HQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENIEKIDFKVG 233
             V+ Q Y +M++LLH AV++E QL       KR GI++  + +++  N N      K G
Sbjct: 122 DVVELQEYVEMEDLLHKAVQVEQQL-------KRKGIARKNSSSSY--NPNWRDRFKKEG 181

Query: 234 GKYDLDKKNKVETSKGKEKAEEYKKI-RERNRDIKCWKCQGSGHLSCDCPNKRVMIIKNG 293
           G       + V   +GK        +     R+IKC+KC G GH++ +CP +R+MI+K  
Sbjct: 182 GN---SSSSAVTPPQGKSPTNPNTSVFPTGTRNIKCFKCLGRGHIASECPTRRIMIMKED 241

Query: 294 QVVTDSEESDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVDQRDNLFHTRC 353
             +T   E D     EEE+++ EE L+     IL+ RRLL +Q+   +  QR+N+FHTRC
Sbjct: 242 GQITSESEPD-----EEEVEKEEEALQGD---ILMVRRLLGSQIQPLEQTQRENIFHTRC 291

Query: 354 LVKGTPCSLV 363
            +KG  CSL+
Sbjct: 302 SIKGKLCSLI 291

[Close]

BLAST of CmaCh13G003130 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 149/312 (47.76%), Postives = 209/312 (66.99%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           E YL++E+K+E VFDC+N+SEE+K+KLV  EF DYAIIWW  L    RRN E PI TWEE
Sbjct: 116 EAYLEWEKKVELVFDCHNYSEEKKVKLVAVEFTDYAIIWWDQLVLSRRRNRERPINTWEE 175

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K +MR+R++P HY R L Q+L +L QGS+SVE+Y+KEME +M RA I E+E +TMARFL
Sbjct: 176 MKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIMIRANI-EEERETMARFL 235

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNT-WKKNEN 225
            GLN+ +A+ VD Q Y ++++++H+A+K+E QL  +K+ S R  +  S+++ + W K+  
Sbjct: 236 HGLNQDIANVVDLQHYVELEDMVHMAMKVERQL--KKKGSTRTNLGSSSSWKSKWSKD-- 295

Query: 226 IEKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNK 285
            EK+  K   +   D K     SKGK  ++       RNRDIKC+KC G+GH++  CPNK
Sbjct: 296 -EKVVSKPKIEPIKDHKEGGNQSKGKSDSQ-----HSRNRDIKCFKCLGTGHIASQCPNK 355

Query: 286 RVMIIK-NGQVVTDSEESDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVDQ 345
           RVMI++ NG V T+SE  D      E+  +  E   DG   ++V RR L  QV ++   Q
Sbjct: 356 RVMILRDNGDVETESESDDDPMPPLEDANDGVEYPVDGK--LMVARRALNMQVKEDAEVQ 414

Query: 346 RDNLFHTRCLVK 356
           RDN+FHTRC +K
Sbjct: 416 RDNIFHTRCHIK 414

[Close]

BLAST of CmaCh13G003130 vs. NCBI nr
Match: gi|923889381|ref|XP_013715882.1| (PREDICTED: uncharacterized protein LOC106419615 [Brassica napus])

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 142/320 (44.38%), Postives = 204/320 (63.75%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           + YL++E+KIE VF+C ++S  +++K+   EF DYA+ WW  L +  R N E P+++W E
Sbjct: 142 DAYLEWEKKIELVFNCQHYSNAQRIKIAATEFYDYALSWWDQLVTTRRLNQENPVDSWHE 201

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K+LMRKR++P HY R L QKL  L QG+++VEEYY++ME LM RA I ED E TMARFL
Sbjct: 202 MKSLMRKRFVPSHYHRDLHQKLRRLTQGTRTVEEYYQDMELLMLRASILEDRETTMARFL 261

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENI 225
           GGLNR++   V+ Q Y +++E+LH A+ +E QL   K NS+ YG SK   F+  K+ +  
Sbjct: 262 GGLNREIQDNVEMQHYVEIEEMLHKAILVEQQLK-RKGNSRSYGSSK---FHHSKEEKTS 321

Query: 226 EKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNKR 285
              D K   K +    N     KGK +         R RD+KC+KCQG GH + +C NK+
Sbjct: 322 YLKDSKPQQKEETKPSNTYSKDKGKAEITS-----SRTRDVKCFKCQGRGHYANECTNKK 381

Query: 286 VMI-IKNGQVVTDSEE--SDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVD 345
           VMI ++NG+  ++ E+  SDH+E       + E E+E      LVTRRLL  Q    +++
Sbjct: 382 VMILLENGEYESEEEKFGSDHEE------SDEESEVEPVKGRFLVTRRLLNVQAKNGELE 441

Query: 346 QRDNLFHTRCLVKGTPCSLV 363
           QR+NLF+TRC+V+G  CSL+
Sbjct: 442 QRENLFYTRCMVQGKVCSLI 446

[Close]

BLAST of CmaCh13G003130 vs. NCBI nr
Match: gi|923889376|ref|XP_013715880.1| (PREDICTED: uncharacterized protein LOC106419613 [Brassica napus])

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 142/320 (44.38%), Postives = 204/320 (63.75%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           + YL++E+KIE VF+C ++S  +++K+   EF DYA+ WW  L +  R N E P+++W E
Sbjct: 142 DAYLEWEKKIELVFNCQHYSNAQRIKIAATEFYDYALSWWDQLVTTRRLNQENPVDSWHE 201

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K+LMRKR++P HY R L QKL  L QG+++VEEYY++ME LM RA I ED E TMARFL
Sbjct: 202 MKSLMRKRFVPSHYHRDLHQKLRRLTQGTRTVEEYYQDMELLMLRASILEDRETTMARFL 261

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENI 225
           GGLNR++   V+ Q Y +++E+LH A+ +E QL   K NS+ YG SK   F+  K+ +  
Sbjct: 262 GGLNREIQDNVEMQHYVEIEEMLHKAILVEQQLK-RKGNSRSYGSSK---FHHSKEEKTS 321

Query: 226 EKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNKR 285
              D K   K +    N     KGK +         R RD+KC+KCQG GH + +C NK+
Sbjct: 322 YLKDSKPQQKEETKPSNTYSKDKGKAEITS-----SRTRDVKCFKCQGRGHYANECTNKK 381

Query: 286 VMI-IKNGQVVTDSEE--SDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVD 345
           VMI ++NG+  ++ E+  SDH+E       + E E+E      LVTRRLL  Q    +++
Sbjct: 382 VMILLENGEYESEEEKFGSDHEE------SDEESEVEPVKGRFLVTRRLLNVQAKNGELE 441

Query: 346 QRDNLFHTRCLVKGTPCSLV 363
           QR+NLF+TRC+V+G  CSL+
Sbjct: 442 QRENLFYTRCMVQGKVCSLI 446

[Close]

BLAST of CmaCh13G003130 vs. NCBI nr
Match: gi|823145097|ref|XP_012472412.1| (PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii])

HSP 1 Score: 253.4 bits (646), Expect = 5.8e-64
Identity = 144/338 (42.60%), Postives = 215/338 (63.61%), Query Frame = 1


Query: 36  DQMKQIEIAL---------EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWT 95
           D +K I++++         E YL++E+K+E VF+C+N+SE +K+KL   EF DYAI+WW 
Sbjct: 224 DNLKNIKMSILPFQGKNDPESYLEWEKKMELVFECHNYSENKKVKLAAIEFSDYAIVWWD 283

Query: 96  SLKSKWRRNYEEPIETWEELKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMET 155
            L +  RRN E PI TW E+K +MRKR++P +Y R L Q+L  L QG++SVE+YYK+ME 
Sbjct: 284 QLVTSRRRNGERPISTWAEMKAVMRKRFVPSYYHRELYQRLQNLTQGNRSVEDYYKDMEI 343

Query: 156 LMNRACIDEDEEDTMARFLGGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSK 215
            M RA ++ED E TMARFL GLNR +A+ V+ Q Y ++ +++H+A+K+E QL       K
Sbjct: 344 AMIRADVEEDREATMARFLAGLNRDIANIVEFQHYVEVMDMVHMAIKVEKQL-------K 403

Query: 216 RYGISKS-TTFNTWKKNENIEKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRD 275
           R G +++  T +T K  +   K   +    +   K N+V     K K E    +   +RD
Sbjct: 404 RKGPTQTYPTTSTNKWAQGTSKAPNRPKKPFVAAKPNQVSADASKNKNE---AVSNHSRD 463

Query: 276 IKCWKCQGSGHLSCDCPNKRVMIIK-NGQVVTDSEESDHDELVEEEIQEHEEELEDGSRL 335
           IKC+KCQG GH++  CPN+RVM+++ NG++ ++ E+ +  E+  EE +E E  +E     
Sbjct: 464 IKCFKCQGRGHIASQCPNRRVMVVRSNGEIESEDEQEEEPEIPMEEGEELELPVEGE--- 523

Query: 336 ILVTRRLLKTQVTKNDVDQRDNLFHTRCLVKGTPCSLV 363
           +LV +R L  QV K +  QRDN+FHTRC V+G  CSL+
Sbjct: 524 LLVVKRSLNIQVAKEE-QQRDNIFHTRCHVQGKVCSLI 547

[Close]

BLAST of CmaCh13G003130 vs. NCBI nr
Match: gi|923883111|ref|XP_013713338.1| (PREDICTED: uncharacterized protein LOC106417017 [Brassica napus])

HSP 1 Score: 253.4 bits (646), Expect = 5.8e-64
Identity = 142/320 (44.38%), Postives = 204/320 (63.75%), Query Frame = 1


Query: 46  EEYLQYERKIEHVFDCNNFSEERKLKLVVAEFCDYAIIWWTSLKSKWRRNYEEPIETWEE 105
           + YL++E+KIE VF+C ++S  +++K+   EF DYA+ WW  L +  R N E P+++W E
Sbjct: 190 DAYLEWEKKIELVFNCQHYSNAQRIKIAATEFYDYALSWWDQLVTTRRLNQENPVDSWHE 249

Query: 106 LKTLMRKRYIPKHYSRVLKQKLYTLQQGSKSVEEYYKEMETLMNRACIDEDEEDTMARFL 165
           +K+LMRKR++P HY R L QKL  L QG+++VEEYY++ME LM RA I ED E TMARFL
Sbjct: 250 MKSLMRKRFVPSHYHRDLHQKLRRLTQGTRTVEEYYQDMELLMLRASILEDREATMARFL 309

Query: 166 GGLNRQLAHQVDRQAYFDMQELLHLAVKIEGQLAWEKENSKRYGISKSTTFNTWKKNENI 225
           GGLNR++   V+ Q Y +++E+LH A+ +E QL   K NS+ YG SK   F+  K+ +  
Sbjct: 310 GGLNREIQDNVEMQHYVEIEEMLHKAILVEQQLK-RKGNSRSYGSSK---FHHSKEEKTS 369

Query: 226 EKIDFKVGGKYDLDKKNKVETSKGKEKAEEYKKIRERNRDIKCWKCQGSGHLSCDCPNKR 285
              D K   K +    N     KGK +         R RD+KC+KCQG GH + +C NK+
Sbjct: 370 YLKDSKPQQKEETKPSNIYSKDKGKAEITS-----SRTRDVKCFKCQGRGHYANECTNKK 429

Query: 286 VMI-IKNGQVVTDSEE--SDHDELVEEEIQEHEEELEDGSRLILVTRRLLKTQVTKNDVD 345
           +MI ++NG+  ++ E+  SDH+E       E E E+E     +LVTRRLL  Q    + +
Sbjct: 430 IMILLENGEYESEEEKFGSDHEE------SEEESEVEPVKGRLLVTRRLLNVQAKNGEFE 489

Query: 346 QRDNLFHTRCLVKGTPCSLV 363
           QR+NLF+TRC+V+G  CSL+
Sbjct: 490 QRENLFYTRCMVQGKVCSLI 494

The following BLAST results are available for this feature:

BLAST of CmaCh13G003130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G003130 vs. TrEMBL


Match Name	E-value	Identity	Description
E7BQD7_PEA	1.4e-61	41.64	Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1	[more]
A0A151RW41_CAJCA	2.4e-61	40.99	Uncharacterized protein OS=Cajanus cajan GN=KK1_031655 PE=4 SV=1	[more]
E7BQD6_PEA	2.7e-60	40.69	Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1	[more]
A5AMK2_VITVI	3.5e-60	43.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1	[more]
A0A151R7Z9_CAJCA	3.9e-59	43.23	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_...	[more]

BLAST of CmaCh13G003130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh13G003130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|985456365\|ref\|XP_015387373.1\|	1.8e-65	47.76	PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis]	[more]
gi\|923889381\|ref\|XP_013715882.1\|	4.4e-64	44.38	PREDICTED: uncharacterized protein LOC106419615 [Brassica napus]	[more]
gi\|923889376\|ref\|XP_013715880.1\|	4.4e-64	44.38	PREDICTED: uncharacterized protein LOC106419613 [Brassica napus]	[more]
gi\|823145097\|ref\|XP_012472412.1\|	5.8e-64	42.60	PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]	[more]
gi\|923883111\|ref\|XP_013713338.1\|	5.8e-64	44.38	PREDICTED: uncharacterized protein LOC106417017 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR005162	Retrotrans_gag_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G003130.1	CmaCh13G003130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 264..284 score: 1.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 267..283 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 262..285 score: 2.0
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 71..170 score: 2.2
None	No IPR available	unknown	Coil	Coil	coord: 24..54 score: -coord: 304..324 scor
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 24..188 score: 1.1
None	No IPR available	PANTHER	PTHR22847:SF430	MZB10.11 PROTEIN-RELATED	coord: 24..188 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G003130	Watermelon (97103) v2	cmawmbB211
CmaCh13G003130	Wax gourd	cmawgoB0265
CmaCh13G003130	Cucurbita maxima (Rimu)	cmacmaB211
CmaCh13G003130	Cucurbita maxima (Rimu)	cmacmaB214
CmaCh13G003130	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G003130	Wild cucumber (PI 183967)	cmacpiB222
CmaCh13G003130	Melon (DHL92) v3.5.1	cmameB204
CmaCh13G003130	Watermelon (Charleston Gray)	cmawcgB183
CmaCh13G003130	Watermelon (Charleston Gray)	cmawcgB191
CmaCh13G003130	Watermelon (97103) v1	cmawmB210
CmaCh13G003130	Cucurbita pepo (Zucchini)	cmacpeB236