CmaCh13G001770 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G001770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHistone H4
LocationCma_Chr13 : 1353954 .. 1355010 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCGCTAGCAAGATCGATCCGGTCAAGGCAAACTAAGCTGTGTGTAAATGAGAGATTTGTGGTGTTGTTTACTTGTGTTTTCAAGTCAATGAGGAATTGGCTTCAAAGGCTTTCTTTTTGGTTCTTTTTTCATGGCGTTTTGCAGAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGTGTCCATTTGTGAGAAAGTTCATGTTATGAAGATTTGTGTTTTATAGAACAAATCACTCGTACGTTCGGTTATTCAATTAAACTACCAAAAATTTGAATCACAAAAAAACACTGATATTTAACAATCATAATGAAAGTCATCGTTTATTCTAAACCAATTTGGCAATTTAATTAGCATAATCGAATCCCATCGCAATCGAAAATGAAAGCGGGAGATCGAAAACTTCTAAAATTTTCAAATATCTCTTGAATTGTCAGAGAAAGAGATTGTGAAATTTTCATCTGGAAAAGCAATGCATGAAGATTACATCTGAAAATGATCTAAAATACTCAGAGAGTATCGTTTAGAAATCAGATCCAACAAACAGAAGCATGGTAACTTCAGAGTCTGAAACAAACAGTTTCTAATTAGACAAAAGAAGATTTCCAGCTGCAGAATAATCCATCAAACGAGAGATACGATTAGCTCGCTGCTGATCGAAATCAACGTTCAATGCTAACATAATCAGAAATAATATACAGTTTTTCTCCAGAATCAGAACCAGTTTCCACATTCAAACCACCGAAATCATTTAATCTCCAATATCCAAGCCCTAGATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTAAGCGCATAAACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACGGCATCGCGAATAACATTCTCGAGGAAAATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATCGCCGGCTTAGTGATTCCTTGAATGTTATCTCTCAGAACCTTCCG

mRNA sequence

ATGGTTTCGCTAGCAAGATCGATCCGGTCAAGGCAAACTAAGCTGTGTAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGTGTCCATTTGTGAGAAAGTTCATATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTAAGCGCATAAACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACGGCATCGCGAATAACATTCTCGAGGAAAATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATCGCCGGCTTAGTGATTCCTTGAATGTTATCTCTCAGAACCTTCCG

Coding sequence (CDS)

ATGGTTTCGCTAGCAAGATCGATCCGGTCAAGGCAAACTAAGCTGTGTAAGCAAGCTGCAATGTTCTTCCCAGTGGTGGATGAGTTCATTGTGTCCATTTGTGAGAAAGTTCATATCCTAAAATCCCTAACCTCCAAAGCCGTAAAGAGTGCGACCTTGCCTCTTAAGCGCATAAACAACATCCATGGCGGTGACGGTCTTCCGGCGAGCGTGCTCGGTGTAGGTGACGGCATCGCGAATAACATTCTCGAGGAAAATCTTGAGAACGCCGCGAGTCTCCTCGTAGATCAGGCCGCTGATACGCTTTACGCCGCCTCGCCTGGCCAGACGCCGAATCGCCGGCTTAGTGATTCCTTGAATGTTATCTCTCAGAACCTTCCG

Protein sequence

MVSLARSIRSRQTKLCKQAAMFFPVVDEFIVSICEKVHILKSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYAASPGQTPNRRLSDSLNVISQNLP
Homology
[Close]
BLAST of CmaCh13G001770 vs. TrEMBL
Match: A0A0E0DSL3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 47/83 (56.63%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 45  SKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYA 104
           ++AV+ A L L+R++++HGGDGL A VLGVGDG+A+++LEE+LE+AA LLVD+  D L+A
Sbjct: 60  AEAVEGAALALERVDDVHGGDGLAAGVLGVGDGVADDVLEEDLEHAAGLLVDEPGDALHA 119

Query: 105 ASPGQTPNRRLSDSLNVISQNLP 128
           A P Q P+RRL D L+V++++LP
Sbjct: 120 APPRQPPDRRLGDPLDVVAEHLP 142

[Close]
BLAST of CmaCh13G001770 vs. TrEMBL
Match: A0A0E0CUB3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-19
Identity = 48/82 (58.54%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 45  SKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYA 104
           ++AV+ ATL L+R++++HGGDGL A VL VGDG+A+++LEE+LE+AA LLVDQ  D L+A
Sbjct: 24  AEAVEGATLALERVDDVHGGDGLAAGVLRVGDGVADDVLEEDLEHAAGLLVDQPGDALHA 83

Query: 105 ASPGQTPNRRLSDSLNVISQNL 127
           A P Q P+RRL D+L+V++Q+L
Sbjct: 84  APPRQPPDRRLGDALDVVAQHL 105

[Close]
BLAST of CmaCh13G001770 vs. TrEMBL
Match: F7BIL1_MONDO (Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-18
Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 1 

Query: 40  LKSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAA 99
           L+SL +++VK + L L+ +++IHGGD LP SV  VGDG+ + +L+ENL++AA LLVD+  
Sbjct: 8   LESLAAESVKGSALALEGVDHIHGGDSLPLSVFCVGDGVPDYVLQENLQHAAGLLVDEPR 67

Query: 100 DTLYAASPGQTPNRRLSDSLNVISQNLP 128
           DTL AA+P QT N RLSD+L+V+ +NLP
Sbjct: 68  DTLDAAAPSQTANSRLSDALDVVPKNLP 95

[Close]
BLAST of CmaCh13G001770 vs. TrEMBL
Match: J3LFX5_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 46/84 (54.76%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           L ++AV+ A L L+R++++HGGDGL A VL VGDG+A+++L+E+LE+AA LLVD+  D L
Sbjct: 14  LAAEAVEGAALALERVDDVHGGDGLAAGVLRVGDGVADDVLQEDLEHAAGLLVDEPGDAL 73

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
            AA P Q P+RRL D L+V+++NL
Sbjct: 74  DAAPPRQPPDRRLRDPLDVVAENL 97

[Close]
BLAST of CmaCh13G001770 vs. TrEMBL
Match: H2MZI7_ORYLA (Uncharacterized protein OS=Oryzias latipes GN=LOC101159884 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.4e-17
Identity = 45/86 (52.33%), Postives = 67/86 (77.91%), Query Frame = 1 

Query: 40  LKSLTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAA 99
           +  LTSK+V+SA+L L+ +++IHGG GLP  VLGVGDGI +++L+ENL++ A LLVDQ  
Sbjct: 25  ISDLTSKSVQSASLSLQSVHHIHGGHGLPLGVLGVGDGITDHVLQENLQHTAGLLVDQTG 84

Query: 100 DTLYAASPGQTPNRRLSDSLNVISQN 126
           DTL++ +  QT +R   DSL+VI+++
Sbjct: 85  DTLHSTTTSQTADRWFGDSLDVITED 110

[Close]
BLAST of CmaCh13G001770 vs. NCBI nr
Match: gi|683448541|gb|KFZ46922.1| (hypothetical protein N321_09060, partial [Caprimulgus carolinensis])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-16
Identity = 44/84 (52.38%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           LT+KAV+ A+L LK ++++HG   LP  VLGVGDG+A+++L+E+L++AA LLVD+  DTL
Sbjct: 1   LTTKAVEGASLALKGVHHVHGRHRLPLGVLGVGDGVADHVLQEHLQHAARLLVDEPRDTL 60

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
           +AA+P Q  + RL D+L+V++Q+L
Sbjct: 61  HAATPSQAADGRLGDALDVVAQHL 84

[Close]
BLAST of CmaCh13G001770 vs. NCBI nr
Match: gi|677380685|gb|KFQ03637.1| (hypothetical protein N330_14508, partial [Leptosomus discolor])

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 43/84 (51.19%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           L ++AV+ A+L L+R++++HG D LP  VL VGDG+A+++L+E+L++AA LLVDQ  D L
Sbjct: 1   LAAEAVEGASLALERVHHVHGRDRLPLGVLRVGDGVADHVLQEHLQHAARLLVDQPRDAL 60

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
           +AA+P Q P+ RL D+L+V++Q+L
Sbjct: 61  HAAAPSQAPDGRLGDALDVVAQHL 84

[Close]
BLAST of CmaCh13G001770 vs. NCBI nr
Match: gi|678150954|gb|KFV20105.1| (hypothetical protein N340_11232, partial [Tauraco erythrolophus])

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 43/84 (51.19%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           LT++AV+SA+L LK ++++HG   LP  VLGVGDG+ N++L+E+L++AA LLVD+  D L
Sbjct: 1   LTTEAVESASLALKGVDHVHGSHRLPLGVLGVGDGVTNHVLQEDLQHAARLLVDEPRDAL 60

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
           +AA+P Q  + RL D+L+V++Q+L
Sbjct: 61  HAATPSQAADGRLGDALDVVAQHL 84

[Close]
BLAST of CmaCh13G001770 vs. NCBI nr
Match: gi|167860003|emb|CAQ03483.1| (histone H4 [Actinidia deliciosa var. deliciosa])

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-16
Identity = 41/82 (50.00%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 45  SKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTLYA 104
           ++AV+ A LPL+ ++++HG   LP  +L VG G+A+++L+E+LE++ASLL+DQAAD+ +A
Sbjct: 2   AEAVEGAALPLESVHHVHGSHRLPPGMLSVGHGVADHVLQEDLEHSASLLIDQAADSFHA 61

Query: 105 ASPGQTPNRRLSDSLNVISQNL 127
           ASP Q PNRRL D L+++ ++L
Sbjct: 62  ASPRQPPNRRLRDPLDIVPEHL 83

[Close]
BLAST of CmaCh13G001770 vs. NCBI nr
Match: gi|676766166|gb|KFO96012.1| (hypothetical protein N300_13117, partial [Calypte anna])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 42/84 (50.00%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 43  LTSKAVKSATLPLKRINNIHGGDGLPASVLGVGDGIANNILEENLENAASLLVDQAADTL 102
           LT++AV+  +L LKR++ +HG  GLP  VLGVG+ +AN++L+++L++AA LLVDQA D L
Sbjct: 1   LTTEAVEGTSLALKRVHYVHGRHGLPLGVLGVGNSVANHVLQKHLQHAARLLVDQARDAL 60

Query: 103 YAASPGQTPNRRLSDSLNVISQNL 127
           +AA+P Q  + RLS++L++++Q+L
Sbjct: 61  HAATPSQAADSRLSNALDIVAQHL 84

The following BLAST results are available for this feature:
BLAST of CmaCh13G001770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G001770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0DSL3_9ORYZ4.0e-1956.63Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
A0A0E0CUB3_9ORYZ6.9e-1958.54Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
F7BIL1_MONDO4.5e-1854.55Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1[more]
J3LFX5_ORYBR2.2e-1754.76Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
H2MZI7_ORYLA6.4e-1752.33Uncharacterized protein OS=Oryzias latipes GN=LOC101159884 PE=4 SV=1[more]
BLAST of CmaCh13G001770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh13G001770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|683448541|gb|KFZ46922.1|3.5e-1652.38hypothetical protein N321_09060, partial [Caprimulgus carolinensis][more]
gi|677380685|gb|KFQ03637.1|4.6e-1651.19hypothetical protein N330_14508, partial [Leptosomus discolor][more]
gi|678150954|gb|KFV20105.1|6.0e-1651.19hypothetical protein N340_11232, partial [Tauraco erythrolophus][more]
gi|167860003|emb|CAQ03483.1|7.8e-1650.00histone H4 [Actinidia deliciosa var. deliciosa][more]
gi|676766166|gb|KFO96012.1|1.0e-1550.00hypothetical protein N300_13117, partial [Calypte anna][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G001770.1CmaCh13G001770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G001770Silver-seed gourdcarcmaB0469
CmaCh13G001770Silver-seed gourdcarcmaB0610
CmaCh13G001770Silver-seed gourdcarcmaB1017
CmaCh13G001770Cucumber (Chinese Long) v3cmacucB0234
CmaCh13G001770Cucumber (Chinese Long) v3cmacucB0266
CmaCh13G001770Watermelon (97103) v2cmawmbB220
CmaCh13G001770Watermelon (97103) v2cmawmbB224
CmaCh13G001770Watermelon (97103) v2cmawmbB225
CmaCh13G001770Wax gourdcmawgoB0243
CmaCh13G001770Wax gourdcmawgoB0244
CmaCh13G001770Wax gourdcmawgoB0259
CmaCh13G001770Cucurbita maxima (Rimu)cmacmaB208
CmaCh13G001770Cucurbita maxima (Rimu)cmacmaB220
CmaCh13G001770Cucurbita maxima (Rimu)cmacmaB226
CmaCh13G001770Cucurbita maxima (Rimu)cmacmaB234
CmaCh13G001770Cucumber (Gy14) v1cgycmaB0631
CmaCh13G001770Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G001770Cucurbita moschata (Rifu)cmacmoB226
CmaCh13G001770Wild cucumber (PI 183967)cmacpiB205
CmaCh13G001770Wild cucumber (PI 183967)cmacpiB232
CmaCh13G001770Cucumber (Chinese Long) v2cmacuB203
CmaCh13G001770Cucumber (Chinese Long) v2cmacuB230
CmaCh13G001770Melon (DHL92) v3.5.1cmameB189
CmaCh13G001770Melon (DHL92) v3.5.1cmameB190
CmaCh13G001770Melon (DHL92) v3.5.1cmameB194
CmaCh13G001770Watermelon (Charleston Gray)cmawcgB189
CmaCh13G001770Watermelon (Charleston Gray)cmawcgB194
CmaCh13G001770Watermelon (97103) v1cmawmB185
CmaCh13G001770Watermelon (97103) v1cmawmB209
CmaCh13G001770Cucurbita pepo (Zucchini)cmacpeB226
CmaCh13G001770Cucurbita pepo (Zucchini)cmacpeB235
CmaCh13G001770Cucurbita pepo (Zucchini)cmacpeB237
CmaCh13G001770Bottle gourd (USVL1VR-Ls)cmalsiB194
CmaCh13G001770Bottle gourd (USVL1VR-Ls)cmalsiB196
CmaCh13G001770Bottle gourd (USVL1VR-Ls)cmalsiB201
CmaCh13G001770Bottle gourd (USVL1VR-Ls)cmalsiB216
CmaCh13G001770Cucumber (Gy14) v2cgybcmaB061
CmaCh13G001770Cucumber (Gy14) v2cgybcmaB727
CmaCh13G001770Melon (DHL92) v3.6.1cmamedB210
CmaCh13G001770Melon (DHL92) v3.6.1cmamedB215