CmaCh13G000760 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G000760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr13 : 582938 .. 583613 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGGTCGATTTGGGCTTCCCATGTGGGCCGACATGGGCTTCCACAGTGGGCCGACCGTGGCTTCGATTATAAGCCCAATTGGGTTTCCACTGTAGGCCGACATGGGCATCCACTGTGGGCCGACCTGTGCTTCCAGGCCGACTGGGCTTCCAATATGGGCCGACATGGGCTTCCCAGATGGGCCGACATGGGCTTCCATAGTGGGCCGACATGGGCTTCCGGGACGATTTGGACTTTCACTGTGGGTAGACATGGGCTCACTGTGGGCCGACATAGCCTTCCATTGTGGGCCGACTTGGGCTTCAACTATGGGCCTCGTTCGGCTTCAAATATGGCTATATTTGGGTTTCCAATATGGGCCTATTGGGGCTTTGTTTATGGTCTCCACTATGGGCCGATTTGGGATTGGGCTTCCACTTTGGGCTGATTTGGGCTTGTGCTTCCACTATGGACCGATTTTGGTTGGGCTTCAAGTGTGGCCCGATTTGGCTTGGGCTTTCACCATGGGCCAATTTGGGCTTCACTACGTGGGCCGACTTGGGCTTCATGGGCCGACTTGGGCTTCATGGGCCGATTTGGGCTTCACTCGTGAACCGATCTGGGCTTCAACTATGGGCCTTTTTGGTCCTCCATTATGGGCCATTTTGGCCTTCCACCATGGGCTTAGTTGA

mRNA sequence

ATGGAGGGGTCGATTTGGGCTTCCCATGTGGGCCGACATGGGCTTCCACAGTGGGCCGACCGTGGCTTCGATTATAAGCCCAATTGGGTTTCCACTGCCGACATGGGCATCCACTGTGGGCCGACCTGTGCTTCCAGGCCGACTGGGCTTCCAATATGGGCCGACATGGGCTTCCCAGATGGGCCGACATGGGCTTCCATAGTGGGCCGACATGGGCTTCCGGGACGATTTGGACTTTCACTGTGGGTAGACATGGGCTCACTGTGGGCCGACATAGCCTTCCATTGTGGGCCGACTTGGGCTTCAACTATGGGCCTCGTTCGGCTTCAAATATGGCTATATTTGGGTTTCCAATATGGGCCTATTGGGGCTTTGTTTATGGTCTCCACTATGGGCCGATTTGGGATTGGGCTTCCACTTTGGGCTGATTTGGGCTTGTGCTTCCACTATGGACCGATTTTGGTTGGGCTTCAAGTGTGGCCCGATTTGGCTTGGGCTTTCACCATGGGCCAATTTGGGCTTCACTACGTGGGCCGACTTGGGCTTCATGGGCCGACTTGGGCTTCATGGGCCGATTTGGGCTTCACTCGTGAACCGATCTGGGCTTCAACTATGGGCCTTTTTGGTCCTCCATTATGGGCCATTTTGGCCTTCCACCATGGGCTTAGTTGA

Coding sequence (CDS)

ATGGAGGGGTCGATTTGGGCTTCCCATGTGGGCCGACATGGGCTTCCACAGTGGGCCGACCGTGGCTTCGATTATAAGCCCAATTGGGTTTCCACTGCCGACATGGGCATCCACTGTGGGCCGACCTGTGCTTCCAGGCCGACTGGGCTTCCAATATGGGCCGACATGGGCTTCCCAGATGGGCCGACATGGGCTTCCATAGTGGGCCGACATGGGCTTCCGGGACGATTTGGACTTTCACTGTGGGTAGACATGGGCTCACTGTGGGCCGACATAGCCTTCCATTGTGGGCCGACTTGGGCTTCAACTATGGGCCTCGTTCGGCTTCAAATATGGCTATATTTGGGTTTCCAATATGGGCCTATTGGGGCTTTGTTTATGGTCTCCACTATGGGCCGATTTGGGATTGGGCTTCCACTTTGGGCTGATTTGGGCTTGTGCTTCCACTATGGACCGATTTTGGTTGGGCTTCAAGTGTGGCCCGATTTGGCTTGGGCTTTCACCATGGGCCAATTTGGGCTTCACTACGTGGGCCGACTTGGGCTTCATGGGCCGACTTGGGCTTCATGGGCCGATTTGGGCTTCACTCGTGAACCGATCTGGGCTTCAACTATGGGCCTTTTTGGTCCTCCATTATGGGCCATTTTGGCCTTCCACCATGGGCTTAGTTGA

Protein sequence

MEGSIWASHVGRHGLPQWADRGFDYKPNWVSTADMGIHCGPTCASRPTGLPIWADMGFPDGPTWASIVGRHGLPGRFGLSLWVDMGSLWADIAFHCGPTWASTMGLVRLQIWLYLGFQYGPIGALFMVSTMGRFGIGLPLWADLGLCFHYGPILVGLQVWPDLAWAFTMGQFGLHYVGRLGLHGPTWASWADLGFTREPIWASTMGLFGPPLWAILAFHHGLS
Homology
[Close]
BLAST of CmaCh13G000760 vs. TrEMBL
Match: R4GKJ1_CHICK (Uncharacterized protein OS=Gallus gallus PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-06
Identity = 58/230 (25.22%), Postives = 99/230 (43.04%), Query Frame = 1 

Query: 3   GSIWASHVGRHGLPQWADRGFDYKPNWVSTADMGIHCGPTC------ASRPTGLPIWADM 62
           GS+W S +G + +      GF + P  VS    G+  G  C      +S    + ++  +
Sbjct: 166 GSLWVS-MGPY-VSLRVSMGFLWGPYGVSMCPYGVPMGSLCVPMCPYSSLRVSMGLYGSL 225

Query: 63  GFPDGPTWASIVGRHGLPGRFGLSLWVDMGSLWADIAFHCGPTWASTMGLVRLQI----W 122
             P GP   S+ G +G      +SLWV MGSLW  +    G  W S    V + +    W
Sbjct: 226 CVPMGPYGVSM-GPYGSQCVPMVSLWVPMGSLWVSM----GSLWVSVSLCVPMGLYGSPW 285

Query: 123 LYLGFQYGPIGALFMVSTMGRFGIGLPLWADLGLCFHYGPILVGLQVWPDLAWAFTMGQF 182
           + +GF +  +     VS  G +G  + L+  + +   +GP   G+ + P  +    MG +
Sbjct: 286 VSMGFLW--VSMCPYVSLSGPYGYPMGLYG-VSMWSLWGP--YGVSMCPYGSLCVPMGLY 345

Query: 183 GLHYVGRLGLHGPTWA-SWADLGFTREP------IWASTMGLFGPPLWAI 216
           G+      G +G +    W   G +  P      ++   MGL+G P+ ++
Sbjct: 346 GVSMGSLWGFYGVSMGFLWGPYGVSMGPYGVSMCLYGVPMGLYGVPMGSL 383

The following BLAST results are available for this feature:
BLAST of CmaCh13G000760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G000760 vs. TrEMBL
Match NameE-valueIdentityDescription
R4GKJ1_CHICK9.0e-0625.22Uncharacterized protein OS=Gallus gallus PE=4 SV=1[more]
BLAST of CmaCh13G000760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh13G000760 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G000760.1CmaCh13G000760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G000760Cucurbita maxima (Rimu)cmacmaB220
CmaCh13G000760Cucurbita maxima (Rimu)cmacmaB228
CmaCh13G000760Cucurbita maxima (Rimu)cmacmaB235
CmaCh13G000760Cucumber (Gy14) v1cgycmaB0386
CmaCh13G000760Cucumber (Gy14) v1cgycmaB0402
CmaCh13G000760Cucurbita moschata (Rifu)cmacmoB238
CmaCh13G000760Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G000760Cucurbita moschata (Rifu)cmacmoB226
CmaCh13G000760Cucurbita moschata (Rifu)cmacmoB232
CmaCh13G000760Wild cucumber (PI 183967)cmacpiB220
CmaCh13G000760Wild cucumber (PI 183967)cmacpiB229
CmaCh13G000760Wild cucumber (PI 183967)cmacpiB230
CmaCh13G000760Cucumber (Chinese Long) v2cmacuB219
CmaCh13G000760Cucumber (Chinese Long) v2cmacuB228
CmaCh13G000760Melon (DHL92) v3.5.1cmameB191
CmaCh13G000760Melon (DHL92) v3.5.1cmameB194
CmaCh13G000760Watermelon (Charleston Gray)cmawcgB189
CmaCh13G000760Watermelon (Charleston Gray)cmawcgB194
CmaCh13G000760Watermelon (97103) v1cmawmB185
CmaCh13G000760Watermelon (97103) v1cmawmB209
CmaCh13G000760Cucurbita pepo (Zucchini)cmacpeB235
CmaCh13G000760Cucurbita pepo (Zucchini)cmacpeB245
CmaCh13G000760Cucurbita pepo (Zucchini)cmacpeB249
CmaCh13G000760Bottle gourd (USVL1VR-Ls)cmalsiB196
CmaCh13G000760Bottle gourd (USVL1VR-Ls)cmalsiB201
CmaCh13G000760Cucumber (Gy14) v2cgybcmaB075
CmaCh13G000760Cucumber (Gy14) v2cgybcmaB594
CmaCh13G000760Melon (DHL92) v3.6.1cmamedB211
CmaCh13G000760Melon (DHL92) v3.6.1cmamedB215
CmaCh13G000760Silver-seed gourdcarcmaB0531
CmaCh13G000760Silver-seed gourdcarcmaB0610
CmaCh13G000760Cucumber (Chinese Long) v3cmacucB0250
CmaCh13G000760Cucumber (Chinese Long) v3cmacucB0263
CmaCh13G000760Cucumber (Chinese Long) v3cmacucB0264
CmaCh13G000760Watermelon (97103) v2cmawmbB220
CmaCh13G000760Watermelon (97103) v2cmawmbB225
CmaCh13G000760Watermelon (97103) v2cmawmbB244
CmaCh13G000760Wax gourdcmawgoB0244
CmaCh13G000760Wax gourdcmawgoB0252