CmaCh12G009170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G009170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Apocytochrome f
Location	Cma_Chr12 : 7052315 .. 7052685 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTCGTATAATGATATTTCATGAGAATGGTTTTTGGCGAATGACGTTTTGGTATACAATAGGTCAAATTTTCAGTTAACATTATAAAAAATCAATCTATACGTCAAGAACATTTATTATTACGAAAGATATAAAACTGTTCGCATCGAATGAGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTGGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTTTGTATCTGTTATTTTGGCACAAATCTTTTTAGTTCTTAA

mRNA sequence

ATGATTTCTCGTATAATGATATTTCATGAGAATGATATAAAACTGTTCGCATCGAATGAGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTGGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTTTCTTAA

Coding sequence (CDS)

ATGATTTCTCGTATAATGATATTTCATGAGAATGATATAAAACTGTTCGCATCGAATGAGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTGGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTTTCTTAA

Protein sequence

MISRIMIFHENDIKLFASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLFS

Homology

[Close]

BLAST of CmaCh12G009170 vs. Swiss-Prot
Match: CYF_EUCGG (Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           AS+ERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDP RVQGL
Sbjct: 232 ASDERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPFRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. Swiss-Prot
Match: CYF_CUCSA (Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           A+N RQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 AANGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. Swiss-Prot
Match: CYF_AMBTC (Cytochrome f OS=Amborella trichopoda GN=petA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-25
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1


Query: 1   MISRIMIFHENDIKLFASNE---RQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFG 60
           +ISRI+   +   ++  +N    RQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFG
Sbjct: 213 IISRIIRKEKGGYEITIANALDGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFG 272

Query: 61  QGDAEIVLQDPLRVQGLF 76
           QGDAEIVLQDPLR+QGLF
Sbjct: 273 QGDAEIVLQDPLRIQGLF 290

[Close]

BLAST of CmaCh12G009170 vs. Swiss-Prot
Match: CYF_HELAN (Cytochrome f OS=Helianthus annuus GN=petA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           AS+ RQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASDGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. Swiss-Prot
Match: CYF_CALFG (Cytochrome f OS=Calycanthus floridus var. glaucus GN=petA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           AS+ RQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASDGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. TrEMBL
Match: A0A0S2IE77_9ROSI (Cytochrome f OS=Cucurbita cordata GN=petA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. TrEMBL
Match: A0A0S2IGF5_CUCPE (Cytochrome f OS=Cucurbita pepo var. ozarkana GN=petA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. TrEMBL
Match: A0A0S2IH73_CUCPE (Cytochrome f OS=Cucurbita pepo var. texana GN=petA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. TrEMBL
Match: A0A0S2IGF3_9ROSI (Cytochrome f OS=Cucurbita okeechobeensis GN=petA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. TrEMBL
Match: A0A0S2IHQ7_9ROSI (Cytochrome f OS=Cucurbita pedatifolia GN=petA PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A)

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-24
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASN R+V+DIIP G ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNGREVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. NCBI nr
Match: gi|952954600|gb|ALO21960.1| (PetA (plastid) [Cucurbita digitata])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. NCBI nr
Match: gi|952954824|gb|ALO22181.1| (PetA (plastid) [Cucurbita foetidissima])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. NCBI nr
Match: gi|952955442|gb|ALO22790.1| (PetA (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. NCBI nr
Match: gi|952954342|gb|ALO21706.1| (PetA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 75
           ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL
Sbjct: 232 ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGL 289

[Close]

BLAST of CmaCh12G009170 vs. NCBI nr
Match: gi|1002164244|ref|YP_009234399.1| (cytochrome f (chloroplast) [Akebia trifoliata])

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 17  ASNERQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLF 76
           AS+ RQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLF
Sbjct: 233 ASDRRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLF 291

The following BLAST results are available for this feature:

BLAST of CmaCh12G009170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYF_EUCGG	1.9e-25	96.55	Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1	[more]
CYF_CUCSA	2.5e-25	96.55	Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1	[more]
CYF_AMBTC	3.2e-25	75.64	Cytochrome f OS=Amborella trichopoda GN=petA PE=3 SV=1	[more]
CYF_HELAN	4.2e-25	96.55	Cytochrome f OS=Helianthus annuus GN=petA PE=3 SV=1	[more]
CYF_CALFG	4.2e-25	96.55	Cytochrome f OS=Calycanthus floridus var. glaucus GN=petA PE=3 SV=1	[more]

BLAST of CmaCh12G009170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IE77_9ROSI	1.9e-24	100.00	Cytochrome f OS=Cucurbita cordata GN=petA PE=3 SV=1	[more]
A0A0S2IGF5_CUCPE	1.9e-24	100.00	Cytochrome f OS=Cucurbita pepo var. ozarkana GN=petA PE=3 SV=1	[more]
A0A0S2IH73_CUCPE	1.9e-24	100.00	Cytochrome f OS=Cucurbita pepo var. texana GN=petA PE=3 SV=1	[more]
A0A0S2IGF3_9ROSI	1.9e-24	100.00	Cytochrome f OS=Cucurbita okeechobeensis GN=petA PE=3 SV=1	[more]
A0A0S2IHQ7_9ROSI	1.9e-24	100.00	Cytochrome f OS=Cucurbita pedatifolia GN=petA PE=3 SV=1	[more]

BLAST of CmaCh12G009170 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00540.1	2.9e-24	91.38	ATCG00540.1 photosynthetic electron transfer A	[more]

BLAST of CmaCh12G009170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954600\|gb\|ALO21960.1\|	2.7e-24	100.00	PetA (plastid) [Cucurbita digitata]	[more]
gi\|952954824\|gb\|ALO22181.1\|	2.7e-24	100.00	PetA (plastid) [Cucurbita foetidissima]	[more]
gi\|952955442\|gb\|ALO22790.1\|	2.7e-24	100.00	PetA (plastid) [Cucurbita pepo subsp. pepo]	[more]
gi\|952954342\|gb\|ALO21706.1\|	2.7e-24	100.00	PetA (plastid) [Cucurbita argyrosperma]	[more]
gi\|1002164244\|ref\|YP_009234399.1\|	6.1e-24	96.61	cytochrome f (chloroplast) [Akebia trifoliata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002325	Cyt_f
IPR011054	Rudment_hybrid_motif
IPR024094	Cyt_f_lg_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0009055	electron carrier activity
GO:0020037	heme binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031361	integral component of thylakoid membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G009170.1	CmaCh12G009170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PRINTS	PR00610	CYTOCHROMEF	coord: 23..43 score: 5.1E-32coord: 44..64 score: 5.1E-32coord: 65..76 score: 5.1
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 10..75 score: 1.0
IPR002325	Cytochrome f	PROFILE	PS51010	CYTF	coord: 1..76 score: 22
IPR011054	Rudiment single hybrid motif	unknown	SSF51246	Rudiment single hybrid motif	coord: 11..51 score: 1.95
IPR024094	Cytochrome f large domain	GENE3D	G3DSA:2.60.40.830		coord: 42..70 score: 4.
IPR024094	Cytochrome f large domain	unknown	SSF49441	Cytochrome f, large domain	coord: 46..70 score: 4.0
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 15..41 score: 9.0
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 17..74 score: 6.8
None	No IPR available	PANTHER	PTHR33288:SF3	APOCYTOCHROME F	coord: 17..74 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G009170	Cucurbita moschata (Rifu)	cmacmoB175
CmaCh12G009170	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G009170	Cucurbita moschata (Rifu)	cmacmoB191
CmaCh12G009170	Wild cucumber (PI 183967)	cmacpiB159
CmaCh12G009170	Wild cucumber (PI 183967)	cmacpiB166
CmaCh12G009170	Cucumber (Chinese Long) v2	cmacuB161
CmaCh12G009170	Cucumber (Chinese Long) v2	cmacuB165
CmaCh12G009170	Melon (DHL92) v3.5.1	cmameB153
CmaCh12G009170	Melon (DHL92) v3.5.1	cmameB175
CmaCh12G009170	Watermelon (Charleston Gray)	cmawcgB148
CmaCh12G009170	Watermelon (Charleston Gray)	cmawcgB165
CmaCh12G009170	Watermelon (97103) v1	cmawmB176
CmaCh12G009170	Watermelon (97103) v1	cmawmB180
CmaCh12G009170	Cucurbita pepo (Zucchini)	cmacpeB175
CmaCh12G009170	Cucurbita pepo (Zucchini)	cmacpeB182
CmaCh12G009170	Cucurbita pepo (Zucchini)	cmacpeB195
CmaCh12G009170	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G009170	Bottle gourd (USVL1VR-Ls)	cmalsiB154
CmaCh12G009170	Bottle gourd (USVL1VR-Ls)	cmalsiB180
CmaCh12G009170	Cucumber (Gy14) v2	cgybcmaB056
CmaCh12G009170	Cucumber (Gy14) v2	cgybcmaB169
CmaCh12G009170	Melon (DHL92) v3.6.1	cmamedB167
CmaCh12G009170	Melon (DHL92) v3.6.1	cmamedB190
CmaCh12G009170	Silver-seed gourd	carcmaB0831
CmaCh12G009170	Silver-seed gourd	carcmaB1378
CmaCh12G009170	Cucumber (Chinese Long) v3	cmacucB0182
CmaCh12G009170	Cucumber (Chinese Long) v3	cmacucB0193
CmaCh12G009170	Watermelon (97103) v2	cmawmbB172
CmaCh12G009170	Watermelon (97103) v2	cmawmbB188
CmaCh12G009170	Wax gourd	cmawgoB0184
CmaCh12G009170	Wax gourd	cmawgoB0235
CmaCh12G009170	Cucurbita maxima (Rimu)	cmacmaB125
CmaCh12G009170	Cucurbita maxima (Rimu)	cmacmaB191
CmaCh12G009170	Cucumber (Gy14) v1	cgycmaB0181