CmaCh12G008250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G008250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNAD(P)H-quinone oxidoreductase subunit 1
LocationCma_Chr12 : 6080451 .. 6087284 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGAAAATTATTGAAAGGAGACCAAATGTGTGAGAAAATTATGAGTAGTTAAAGCAAATTTTGGCTTTAGGAAAGCCTATAGAAGGGCTTCACTTATCGATGTAACAGAAGAGAGAAGAAAACAAGAAAGAAAGTAGCAGCAGAGAGAAAATTCAATTTTTGTACGGTGTGTAATAGAGAAAGGCATTTGAGAATTTTCTGTCTTCTTGTCTCTCCCCTCTCGACACCCCCTTTTAAAGTTTCGTGAGAGTTATCTAAACGAGTTAGATTCAGAGCAAGCGTTTATTTTTTCAAGTTGGTATCGGAGCGGCTTTATTTTTCTACAAATTGGTATCAGAGCAATTTAATTTCAACAAGTTGATATCAGAGCTGATGGCGAACATGATGGGACAAATGTTGCTACCACGATTGACGAAGATGAACTACGAGAATTGGAGCATCCAAATGAAAGCCCTTCTCAGTTCGCAAAACACATGGGAGGTGGTCAAAGACGGTTTCAAAGAACCAATTGGCACCATGGGTTACACGGCGGCGCAAAACAAGGTGCTAAAGGAATTACGGTCAAAGGATAAGACAACATTATGCATGCTGTTCCGGGCTGTTGACGAGTCAAGTTTTGAGAAGATTGCAAGGGCAACTACTTCAAAAGAAGCGTGGGCACTCTAGAAAAGGTGATCAAAGAAACCGACCGAGTCAAGCAGGTACATCCCTAATGGTGTTAATATAACACATGCGGAAGCAATTTGGATCTTAGGCACTCTAAGTACATCAATTATAGTGAATTAGCTAGCATGTTCAAAAGCATTAAAACTCAATGAGTTTGAATACTAACATTTTGTCGCTCAAATTTCTTTTTCCTCACGAACCGGTTTCAAATCACCACTAGTGTCTTCTCCACTATTCTCCGGCCTTAGAACGGGATTGTGGAATCTGGTGAGTGACTAAACTTGGGAGGGAATTAGTATATATGAAAAGAGAGTTTGTGAGAGGTTTTTCTCAAGGTTTTTTCCAAAAGTCAACCTTCCATGTACCATGATCACTCAATTTATACAGTCATAATTGCATGTTCATGCAAATTTGAGATCACTAAATTTTGACACTCAAAATTTCACTCAAATGTTTGAGATTATGTGGCAAGCATGCATACTTGAGTTAACCAAATTTTGACCCTCAAAATTTCACTCAAATTTGTGGGGTTTATTTGGCTAAGTATGCAAGTTTGGTTAAACCAAATTTTGACACCTCAAAATTTCACTAACATGTATTTTTCCATTAAATGTCTTAATTTTGATTCGACAATCCAGTTGAATTATTAATTTCAAATTAAAGTAATACTAAATGATTAATTAAACTATTTAATTAATATTTAATATTAATTCAAATGCCAATCTCAATTAATTCCGACACATATTTGATTAAGATATTTAAATCTTATTTAAATATCTCAAATTCTCTCTTTTTGTTTTTAATTCGTAAATAAAACAAAAATGCGGTTAAATTTATCGTATATATGTAGCTGTGAATGTTTGATTAATCCACCACACCTAAATGGCCACACCTAAATGGTGTGAAAGTTATCTTATTTATAATCAAATGAATTACAAGGATATGGAAATAGTAATAAATGGAAATAACAATAAATGAAAAGATACCTATGAAAATAAGGCAAATATTAGATATTTGCCTTATAATAAAATATCAAATATAATATGTGTGGTAAACTATAATTTATTACTAAATATCCTTAACACCGCACCGCAAGCTAAGCGTCGGATTTAAACGAACGTGAAGCTTGAATCTGAAAAATTCAAAGAGGTTGAGAAACACTTTTCATGAAGATGCTAACAACTCGGTTCTTGGCCATCAAAAATTGCAGAGGGATCGCCGCTCAGCGGCGATGCTGCCTTGGCTTCGGCGAGAATATGTCTAACCCATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCCAAGAAGTAGAAGGGGAAACCTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGAAAACTTGGTTGGCGAATAGGCCAGTGCGGCACCCAGATTCCGAAGGTAAATCTCTGCAAAAGGTTGATAGGTTTAGGTTAGGGTTTATGTGAAGGATGAAGGCTGATTGGGAAGAAAATGAGAGAGACTATATTGGCCAAGGGGAAAACCGATTGGGTTGGAAAAGGTGAGGTTATATGTACAGAGTATGACGAAAGGTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAGAAGATTAGAGGATTCAAAAGCCATTGAAAAGAAAGGATCGGGGTTGTTAAACCGAGAGGGCTCTGATAACATGTGAATGTTTGATTAATCCACCACACCTAAATGGTGTGAAAGTTATCTTATTTATAATCAAATGAATTACAAGGATATGGAAATAGTAATAAATGGAAATAACAATAAATGGAAAGATACCTATGAAAATAAGGCAAATATTAGATATTTGCCTTATAATAAAATATCAAATATAATATGTATGGTAAACTATAATTTATTACTAAATATCCTTAACACCGCACCGCAAGCTAAGCGTCGGATTTAAACGAACGTGAAGCTTGAATCTGAAAAATTCAAAGAGGTTGAGAAACACTTTTCATGAAGATGCTAACAACTCGGTTCTTGGCCATCAAAAATTGCAGAGGGATCGCTGCTCAGGGGCGATGCTGCCTTGGCTTCGGCGAGAATATGTCTAACCCATGAAGAGGGATTGTCGCTTAGCGACGATGCTACCTTGGCTCTAGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACCTAGAGCAAGGGACAGAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGACAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGAAAACTTGGTTGGCGAATAGGCCAGTGCGGCACCCAGATTCCGAAGGTAAATCTCTGCAAAAGGTTGATAGGTTTAGGTTAGGGTTTATGTGAAGGATGAAGGCTGATTGGGAAGAAAATGAGAGAGACTATATTGGCCAAGGGGAAAACCGATTTGGTTGGAAAATGTGAGGTTGTATGTACAGAGTATGACGAAAGGTAATTTGGAGGTCAATAGGGTTGAATCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAAACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAGAAGATTAGAGGATTCAAAATCCATTGAAAAGAAAGAATCAGGGTTGTTAAACCGAAAGGGCTCTGATACCATGTGAATGTTTGATTAATCCACCACACCTAAATGGTGTGAAAGTTATCTTATTTATAATAAAATGAATTACAAGGATATGGAAATAGTAATAAATGGATATAACAATAAATGGAAAGATACCTATGATAATAAAGCAAATATTAGATATTTGCTTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATCCTTAACAGTAGCGCATTCTCCCTAATTTGAATTCGAACACTTTGAACTCACTCGTCACACTGTTCTATGGTTTAGTCCAATATGAGCTAGCAGAGGGACCTAATGGACCTATAGATCATGGGCTCCAACGATCCAAGATTAACCTGATAAACTCATTAACCTTGTTAACCAACATTCATTAACTACTAGGATATTCCACTATAGCCTAGTAGTTGCACTCCCCTCACTATAGATATATTTCTATCCATTTGATATAACCATGATTAGTAAGTCGATCCTTCACAGGTTGTTCGTAACTCGAGTTGGGTCAATTTACCGTTTTACCCCTGAAATTACTTCTTGTTCCTTATGTCTCACTGATCCTCTAATGAACAATTAGTTTGTGGTCCAATCAGTAAATTGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACTTGGAGTCAGTACTTAAGGGAACAACCTCTCTTCTATCCTTAAAAGTGGGTAGGAGTGAATTCCATCTTGCACCCCACGTCCCCAGCCATTTACCCAGTCTTACTCCTGAAATGGGAGGCCTATTGAGTCGACGAACTTGAATCATTCTCACCCATGCAAATCTAAGGATAATTCCAAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGAATGAAAAGAAAATCAGTCTCAACAGTAAACGACATTATAAAGTGAGAGTGATTTTCTTCATGGTCCGATCTTATGCAATACTCATTGCATAGGACGCCCCCACTCACATGTTTTCATATGTACAATTTAGTGATCGCATTGTTTATATCATATACAAAAGTGAGCCGCATTCATAGTGTCCCCAGAATAAGGTACTCAGCCTTATCCTTATACTATAGATCATTTTGACTATATACTTGAACTTGGTCAACTCTTATGTATCTACATATAGTTCAAGTAATCATACTATAGCCAGAGTGTTCTTAGTTTATTGAATTTAGATTAATGATTGTAAAGTTCACTTTATTCAATAACAATCTTTACTGAATAAACAACAATAATAACTTTATTGAAAATAGAATATGTTTTTGTTTACCAACTATGAGTTTGAGGACATAAAATCCAACAGTCTCCAGACTCTGCATGGCGAGTTGGAGAGCATGAAGATGAAGGAGTCAGAAAATGTATCTGACTATATTACACGTGTACAGACCGTGGTGAATCAGTTAAATCGAAACGGAGAAATGCTACCCGAGACGAGGGTTGTGGAGAAAATCTTGAGGTCGTAAACCGACAATTTCAAGAATGTTATTTGTGCAATAGAAGAGTCGAAGGATCTGACGAAGTTCACAGACGATGAGCTTGCCAGTTCTCTTGAGGCACATGGACAACTTAGGATAAAGGAGGAGGAGCCACTCGATCAAGCGCTTTAGACGAGGCATCAATAAAAGATGAAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGGAAGCCGCGAGAATGGTCGAGGTGGTCAAGGCAATAGTTATGAAGAAAATTATAAGGAGAAGAGACTGTCGAGCCAAGCAAATTGGCACGGAAGAGGACGCAATCAAGGGCACAGTCAAGGATACAATTCCAACCTCCCGTGCTTTAAATGTCAGAAATATAGCCACTATGCAAATAATTGTAACTTCGACAGATATTACAATTGTGGCAGAATGGGTCATTATGCAAGAGATTGTCGAACCAAAGAGAAGGTGTAAGAAACCATCAACCTAGCCTTGGATGACACAACAAATGGAGGCATCCTCTTGATGGCTCAAAATGAAGAGCCGAACACAAAAAGAGATGGCGGCGCGAAAGATGACGGCGGTATTCTTGAGGTGGTAGAAACCGTTAGAAATGAGGTGATACGCAGCGAATTCGGCGAAATCGCGGTATCAAAGATGAGAAAATCGAAGAAGGATGAACAACCGAAGAACAGAGAGCCCGAACTCGAAGAGAGAGAGCTCCAATGGCCGGAAAAGCAATTTGAGCTAGAAAGAAGAAAGAGGATGAAAATTGAAGAAGAAAAGAAAGAGCTGGAAACAAAAGTTCAATGGTTACAGAAGAAAGTGATTCAGCTGAGTAAGAGTTCCTTCTGGCTAAAACAGGAGAAGGAAAAGAATGAGAAGGCAATCTCCGATCTTACGAAGAAAGTTGAAGAAGGTGCGGAGAAAGAGAAAGGCCTACTCATGAAGATTGAGGGTTTAGTGGACGAGCTAGTAAGGGAGAAAAAGAATATAGAGATACTAACTCAATAGATAAACTCACTCGATGTGAACCTGAATCAAGTTCAACAGAAGACAGTGAACTTACAACACACGATTGAGACACTCACTCGTGATAAAACCAAGATGGAGGAAACAAGAATGCTAGCGGTAAAAGTCACTGTGGACTTATGAAGGGAATTGAATAATTGAATGAAGCCATGAAATCTGAGTCAAGCGTAGCTAAGAACTTGAAAAATGAAGAGGTGCTGTCACAAATGGGATGTTCTCAAGAAGATCCAAATGAAGTCTCATTAGAGAAGGAGGAATCATTGAGTAGGAACATTTAAGTTTATGAGGGAGTTTTGTTGGAAAATAAACTTAAATCAATTTTGTTTCTTTAAATTCAGTTAAAATGGCATAATTATCTCAAGAAAGGAGCCTTTTGATTTACCAGAAGCGGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTATTCGGGTATCAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACGGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTCGGTTATGAACTTTTTGAAATAAATAAAGCGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCTAAAACTTATTTATTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTAAATCTCGGATGGAAATTTCTTTTACCTATATCTCTTGGTAATCTATTATTAACAACTTCCTTTCAACTCTTTTCACTGTAA

mRNA sequence

ATGGAAGCGGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTATTCGGGTATCAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACGGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTCGGTTATGAACTTTTTGAAATAAATAAAGCGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCTAAAACTTATTTATTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTAAATCTCGGATGGAAATTTCTTTTACCTATATCTCTTGGTAATCTATTATTAACAACTTCCTTTCAACTCTTTTCACTGTAA

Coding sequence (CDS)

ATGGAAGCGGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTATTCGGGTATCAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACGGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTCGGTTATGAACTTTTTGAAATAAATAAAGCGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCTAAAACTTATTTATTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTAAATCTCGGATGGAAATTTCTTTTACCTATATCTCTTGGTAATCTATTATTAACAACTTCCTTTCAACTCTTTTCACTGTAA

Protein sequence

MEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEINKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Homology
[Close]
BLAST of CmaCh12G008250 vs. Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-63
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYI GYELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYILGYELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK YEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. Swiss-Prot
Match: NU1C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhA PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.3e-57
Identity = 118/129 (91.47%), Postives = 119/129 (92.25%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGW+ISIPYIF  ELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISIPYIFVPELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK   VFG TI IFITLAKTY FLFISI TRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVGRVFGTTIGIFITLAKTYFFLFISITTRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQL SL
Sbjct: 355 TTSFQLLSL 363

[Close]
BLAST of CmaCh12G008250 vs. Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-56
Identity = 117/129 (90.70%), Postives = 119/129 (92.25%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWD+SIPYIF  E FEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDLSIPYIFVPEFFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NKA EVFG TI IFITLAKTYLFLFI I TRWTLPRLR+DQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKAGEVFGTTIGIFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTS QL SL
Sbjct: 355 TTSSQLLSL 363

[Close]
BLAST of CmaCh12G008250 vs. Swiss-Prot
Match: NU1C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium hirsutum GN=ndhA PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.5e-56
Identity = 115/129 (89.15%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGW+ISIPY+F  ELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLLSSLFVTVLYLGGWNISIPYVFAPELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK   + G TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKINGIIGTTIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQL SL
Sbjct: 355 TTSFQLLSL 363

[Close]
BLAST of CmaCh12G008250 vs. Swiss-Prot
Match: NU1C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium barbadense GN=ndhA PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.5e-56
Identity = 115/129 (89.15%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGW+ISIPY+F  ELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLLSSLFVTVLYLGGWNISIPYVFAPELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK   + G TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKINGIIGTTIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQL SL
Sbjct: 355 TTSFQLLSL 363

[Close]
BLAST of CmaCh12G008250 vs. TrEMBL
Match: W8E3H6_9ROSI (NADH-quinone oxidoreductase subunit H OS=Cucumis hystrix GN=ndhA PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYI GYELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYILGYELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK YEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. TrEMBL
Match: G3ETV4_CUCME (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo subsp. melo GN=ndhA PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-61
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYI GYELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYILGYELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK YEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. TrEMBL
Match: A0A109X083_GYNPE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gynostemma pentaphyllum GN=ndhA PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.9e-59
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISI YIF YE FEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIQYIFVYEFFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NKAYEVFGM ISIFITLAKTYLFLFISI TRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKAYEVFGMIISIFITLAKTYLFLFISITTRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. TrEMBL
Match: A0A0U3DWN6_9ROSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aquilaria sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-55
Identity = 118/129 (91.47%), Postives = 122/129 (94.57%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGW+ISIPYIF  ELFEI
Sbjct: 242 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLLSSLFVTVLYLGGWNISIPYIFVPELFEI 301

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK  E+FG TI IFITLAKTYLFLFISI TRWTLPRLR+DQLLNLGWKFLLPISLGNLLL
Sbjct: 302 NKVDEIFGTTIGIFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 361

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 362 TTSFQLFSL 370

[Close]
BLAST of CmaCh12G008250 vs. TrEMBL
Match: T1QQR6_ANGCO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angophora costata GN=ndhA PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-55
Identity = 119/129 (92.25%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGW+ISIPYIF  ELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISIPYIFVPELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK   VFG TI IFITLAKTYLFLFISI TRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVGRVFGTTIGIFITLAKTYLFLFISITTRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQL SL
Sbjct: 355 TTSFQLLSL 363

[Close]
BLAST of CmaCh12G008250 vs. TAIR10
Match: ATCG01100.1 (ATCG01100.1 NADH dehydrogenase family protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.2e-54
Identity = 111/129 (86.05%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEEL+AGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGW+ISIPYI   ELF+ 
Sbjct: 235 EAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISIPYISILELFQR 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           +   ++FG TI IFITLAKTYLFLF+SIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLL
Sbjct: 295 D---QIFGTTIGIFITLAKTYLFLFVSIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 360

[Close]
BLAST of CmaCh12G008250 vs. TAIR10
Match: ATMG01120.1 (ATMG01120.1 NADH dehydrogenase 1B)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAE E VAGY  EYS +   LF++  Y N+++ S   T+ + GGW    P I    +F+ 
Sbjct: 207 EAEAESVAGYNVEYSSMGSALFFLGEYANMILMSGPCTLFFPGGW----PPILDLPIFK- 266

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLL 121
               ++ G   SI+ ++ K  LFLF+ I  R   PR R DQL+ LG K  LP+SL  ++
Sbjct: 267 ----KIPG---SIWFSI-KVLLFLFLYIWVRAAFPRYRYDQLMGLGRKVFLPLSLARVV 312

[Close]
BLAST of CmaCh12G008250 vs. TAIR10
Match: ATMG00516.1 (ATMG00516.1 NADH dehydrogenase 1C)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAE E VAGY  EYS +   LF++  Y N+++ S   T+ + GGW    P I    +F+ 
Sbjct: 207 EAEAESVAGYNVEYSSMGSALFFLGEYANMILMSGPCTLFFPGGW----PPILDLPIFK- 266

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLL 121
               ++ G   SI+ ++ K  LFLF+ I  R   PR R DQL+ LG K  LP+SL  ++
Sbjct: 267 ----KIPG---SIWFSI-KVLLFLFLYIWVRAAFPRYRYDQLMGLGRKVFLPLSLARVV 312

[Close]
BLAST of CmaCh12G008250 vs. TAIR10
Match: ATMG01275.1 (ATMG01275.1 NADH dehydrogenase 1A)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAE E VAGY  EYS +   LF++  Y N+++ S   T+ + GGW    P I    +F+ 
Sbjct: 207 EAEAESVAGYNVEYSSMGSALFFLGEYANMILMSGPCTLFFPGGW----PPILDLPIFK- 266

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLL 121
               ++ G   SI+ ++ K  LFLF+ I  R   PR R DQL+ LG K  LP+SL  ++
Sbjct: 267 ----KIPG---SIWFSI-KVLLFLFLYIWVRAAFPRYRYDQLMGLGRKVFLPLSLARVV 312

[Close]
BLAST of CmaCh12G008250 vs. NCBI nr
Match: gi|590000467|ref|YP_009004096.1| (NADH-plastoquinone oxidoreductase subunit 1 [Cucumis hystrix])

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-61
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYI GYELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYILGYELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK YEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. NCBI nr
Match: gi|68164859|ref|YP_247655.1| (NADH dehydrogenase subunit 1 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-61
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYI GYELFEI
Sbjct: 231 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYILGYELFEI 290

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK YEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 291 NKVYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 350

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 351 TTSFQLFSL 359

[Close]
BLAST of CmaCh12G008250 vs. NCBI nr
Match: gi|346578249|ref|YP_004841840.1| (NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo])

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-61
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYI GYELFEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYILGYELFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK YEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKVYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. NCBI nr
Match: gi|1002166157|ref|YP_009236332.1| (NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 234.6 bits (597), Expect = 1.0e-58
Identity = 124/129 (96.12%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISI YIF YE FEI
Sbjct: 235 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIQYIFVYEFFEI 294

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NKAYEVFGM ISIFITLAKTYLFLFISI TRWTLPRLRIDQLLNLGWKFLLPISLGNLLL
Sbjct: 295 NKAYEVFGMIISIFITLAKTYLFLFISITTRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 354

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 355 TTSFQLFSL 363

[Close]
BLAST of CmaCh12G008250 vs. NCBI nr
Match: gi|992331628|ref|YP_009229534.1| (NADH dehydrogenase subunit 1 (chloroplast) [Aquilaria sinensis])

HSP 1 Score: 223.8 bits (569), Expect = 1.8e-55
Identity = 118/129 (91.47%), Postives = 122/129 (94.57%), Query Frame = 1 

Query: 2   EAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIFGYELFEI 61
           EAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGW+ISIPYIF  ELFEI
Sbjct: 242 EAEEELVAGYQTEYSGIKFGLFYVASYLNLLLSSLFVTVLYLGGWNISIPYIFVPELFEI 301

Query: 62  NKAYEVFGMTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLL 121
           NK  E+FG TI IFITLAKTYLFLFISI TRWTLPRLR+DQLLNLGWKFLLPISLGNLLL
Sbjct: 302 NKVDEIFGTTIGIFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 361

Query: 122 TTSFQLFSL 131
           TTSFQLFSL
Sbjct: 362 TTSFQLFSL 370

The following BLAST results are available for this feature:
BLAST of CmaCh12G008250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU1C_CUCSA2.3e-6398.45NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU1C_EUCGG9.3e-5791.47NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Eucalyptus globulus s... [more]
NU1C_VITVI2.7e-5690.70NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndh... [more]
NU1C_GOSHI3.5e-5689.15NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium hirsutum GN... [more]
NU1C_GOSBA3.5e-5689.15NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium barbadense ... [more]
BLAST of CmaCh12G008250 vs. TrEMBL
Match NameE-valueIdentityDescription
W8E3H6_9ROSI2.6e-6198.45NADH-quinone oxidoreductase subunit H OS=Cucumis hystrix GN=ndhA PE=3 SV=1[more]
G3ETV4_CUCME2.6e-6198.45NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo subsp. m... [more]
A0A109X083_GYNPE6.9e-5996.12NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gynostemma pentaphyll... [more]
A0A0U3DWN6_9ROSI1.2e-5591.47NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aquilaria sinensis GN... [more]
T1QQR6_ANGCO3.6e-5592.25NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angophora costata GN=... [more]
BLAST of CmaCh12G008250 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01100.11.2e-5486.05ATCG01100.1 NADH dehydrogenase family protein[more]
ATMG01120.13.1e-1038.66ATMG01120.1 NADH dehydrogenase 1B[more]
ATMG00516.13.1e-1038.66ATMG00516.1 NADH dehydrogenase 1C[more]
ATMG01275.13.1e-1038.66ATMG01275.1 NADH dehydrogenase 1A[more]
BLAST of CmaCh12G008250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590000467|ref|YP_009004096.1|3.7e-6198.45NADH-plastoquinone oxidoreductase subunit 1 [Cucumis hystrix][more]
gi|68164859|ref|YP_247655.1|3.7e-6198.45NADH dehydrogenase subunit 1 [Cucumis sativus][more]
gi|346578249|ref|YP_004841840.1|3.7e-6198.45NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo][more]
gi|1002166157|ref|YP_009236332.1|1.0e-5896.12NADH-plastoquinone oxidoreductase subunit 1 (chloroplast) [Gynostemma pentaphyll... [more]
gi|992331628|ref|YP_009229534.1|1.8e-5591.47NADH dehydrogenase subunit 1 (chloroplast) [Aquilaria sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001694NADH_UbQ_OxRdtase_su1/FPO
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016020 membrane
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function GO:0048038 quinone binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G008250.1CmaCh12G008250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 2..130
score: 5.7
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 2..122
score: 8.9
NoneNo IPR availablePANTHERPTHR11432:SF7NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 1, CHLOROPLASTICcoord: 2..130
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G008250Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G008250Cucurbita moschata (Rifu)cmacmoB177