CmaCh12G008030 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G008030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Lysosomal Pro-X carboxypeptidase
Location	Cma_Chr12 : 5820035 .. 5820324 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTATTTAGAGGTAGGAGGTGCTAAGGTTATTGCCTCGAATGTATTCAATCTTATTTTTGACATGTATTGTTTGTTTGTTTATAGCATCGATTTTATGGGAAATCAGTACCGTTTGATTCGATAGAGAAGGCTATGAAAAATGCGAGCGTTCGAGGACATCTGAATTCAGCTCAAGCCTTAGCTGATTATGCTGAAGTGCTTTTGCATATCAAGAAAATGTTTGCTTCTCAAACTTCTCCTATCATTGTCATAGGAGATTGGAGGCTCCTAGGGTGGAAGTAA

mRNA sequence

ATGCTTGTGTATTTAGAGGTAGGAGGTGCTAAGCATCGATTTTATGGGAAATCAGTACCGTTTGATTCGATAGAGAAGGCTATGAAAAATGCGAGCGTTCGAGGACATCTGAATTCAGCTCAAGCCTTAGCTGATTATGCTGAAGTGCTTTTGCATATCAAGAAAATGTTTGCTTCTCAAACTTCTCCTATCATTGTCATAGGAGATTGGAGGCTCCTAGGGTGGAAGTAA

Coding sequence (CDS)

ATGCTTGTGTATTTAGAGGTAGGAGGTGCTAAGCATCGATTTTATGGGAAATCAGTACCGTTTGATTCGATAGAGAAGGCTATGAAAAATGCGAGCGTTCGAGGACATCTGAATTCAGCTCAAGCCTTAGCTGATTATGCTGAAGTGCTTTTGCATATCAAGAAAATGTTTGCTTCTCAAACTTCTCCTATCATTGTCATAGGAGATTGGAGGCTCCTAGGGTGGAAGTAA

Protein sequence

MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQTSPIIVIGDWRLLGWK

Homology

[Close]

BLAST of CmaCh12G008030 vs. TrEMBL
Match: A0A067L640_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05403 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-17
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HRFYGKS+PF S E+A+KNASVRG+ NSAQALADYAE++LH+KK F ++
Sbjct: 130 LLVYIE-----HRFYGKSIPFGSQEEAVKNASVRGYFNSAQALADYAEIILHVKKTFDAE 189

Query: 61  TSPIIVIG 69
            SP+IVIG
Sbjct: 190 NSPVIVIG 192

[Close]

BLAST of CmaCh12G008030 vs. TrEMBL
Match: A0A068VA33_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004449001 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HRFYGKS+P  S+EK MK+ +VRG+ NSAQALADYAEVLLH+K  F++Q
Sbjct: 134 LLVYIE-----HRFYGKSIPLGSMEKVMKSKTVRGYFNSAQALADYAEVLLHVKHKFSAQ 193

Query: 61  TSPIIVIG 69
            SPIIV+G
Sbjct: 194 NSPIIVVG 196

[Close]

BLAST of CmaCh12G008030 vs. TrEMBL
Match: A0A067EVR5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036751mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 3   VYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQTS 62
           VY+E     HRFYGKSVPF S E A+KNA++RG+ NSAQALADYAE+LLHIK+  +++TS
Sbjct: 136 VYIE-----HRFYGKSVPFVSSEDALKNATLRGYFNSAQALADYAEILLHIKEKLSAKTS 195

Query: 63  PIIVIG 69
           PIIV+G
Sbjct: 196 PIIVVG 196

[Close]

BLAST of CmaCh12G008030 vs. TrEMBL
Match: V4TJ70_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033696mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 3   VYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQTS 62
           VY+E     HRFYGKSVPF S E A+KNA++RG+ NSAQALADYAE+LLHIK+  +++TS
Sbjct: 136 VYIE-----HRFYGKSVPFVSSEDALKNATLRGYFNSAQALADYAEILLHIKEKLSAKTS 195

Query: 63  PIIVIG 69
           PIIV+G
Sbjct: 196 PIIVVG 196

[Close]

BLAST of CmaCh12G008030 vs. TrEMBL
Match: A0A0B2R699_GLYSO (Lysosomal Pro-X carboxypeptidase OS=Glycine soja GN=glysoja_026261 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           ++V++E     HR+YGKS+PF S E+AM+NAS RG+ NSAQA+ADYA VLLHIKK  ++Q
Sbjct: 127 LIVFIE-----HRYYGKSIPFGSSEEAMRNASTRGYFNSAQAIADYAAVLLHIKKTLSAQ 186

Query: 61  TSPIIVIG 69
            SPIIVIG
Sbjct: 187 NSPIIVIG 189

[Close]

BLAST of CmaCh12G008030 vs. TAIR10
Match: AT5G22860.1 (AT5G22860.1 Serine carboxypeptidase S28 family protein)

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-17
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HR+YG+++PF S E+A+KNAS  G+LN+AQALADYA +LLH+K+ +++ 
Sbjct: 126 LLVYIE-----HRYYGETMPFGSAEEALKNASTLGYLNAAQALADYAAILLHVKEKYSTN 185

Query: 61  TSPIIVIG 69
            SPIIVIG
Sbjct: 186 HSPIIVIG 188

[Close]

BLAST of CmaCh12G008030 vs. TAIR10
Match: AT2G24280.1 (AT2G24280.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-10
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LV++E     HRFYG+S PF   +K+ K+A   G+LNS QALADYA ++  +K+  +S+
Sbjct: 115 LLVFIE-----HRFYGESTPFG--KKSHKSAETLGYLNSQQALADYAILIRSLKQNLSSE 174

Query: 61  TSPIIVIG 69
            SP++V G
Sbjct: 175 ASPVVVFG 175

[Close]

BLAST of CmaCh12G008030 vs. TAIR10
Match: AT5G65760.1 (AT5G65760.1 Serine carboxypeptidase S28 family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 22/58 (37.93%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 11  KHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQTSPIIVIG 69
           +HR+YG+S+P+ S E+A KNA+   +L + QALAD+A  +  +K+  +++  P+++ G
Sbjct: 133 EHRYYGESMPYGSREEAYKNATTLSYLTTEQALADFAVFVTDLKRNLSAEACPVVLFG 190

[Close]

BLAST of CmaCh12G008030 vs. NCBI nr
Match: gi|659072238|ref|XP_008464256.1| (PREDICTED: lysosomal Pro-X carboxypeptidase-like [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 53/68 (77.94%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           M VYLE     HRFYGKSVPF S EKAMKN S+RGHLNSAQALADYAE+LLHIKK FA  
Sbjct: 118 MSVYLE-----HRFYGKSVPFGSTEKAMKNGSIRGHLNSAQALADYAELLLHIKKKFAYD 177

Query: 61  TSPIIVIG 69
           TSPIIV+G
Sbjct: 178 TSPIIVMG 180

[Close]

BLAST of CmaCh12G008030 vs. NCBI nr
Match: gi|643737948|gb|KDP43936.1| (hypothetical protein JCGZ_05403 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-17
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HRFYGKS+PF S E+A+KNASVRG+ NSAQALADYAE++LH+KK F ++
Sbjct: 130 LLVYIE-----HRFYGKSIPFGSQEEAVKNASVRGYFNSAQALADYAEIILHVKKTFDAE 189

Query: 61  TSPIIVIG 69
            SP+IVIG
Sbjct: 190 NSPVIVIG 192

[Close]

BLAST of CmaCh12G008030 vs. NCBI nr
Match: gi|802551176|ref|XP_012064658.1| (PREDICTED: lysosomal Pro-X carboxypeptidase-like isoform X1 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-17
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HRFYGKS+PF S E+A+KNASVRG+ NSAQALADYAE++LH+KK F ++
Sbjct: 130 LLVYIE-----HRFYGKSIPFGSQEEAVKNASVRGYFNSAQALADYAEIILHVKKTFDAE 189

Query: 61  TSPIIVIG 69
            SP+IVIG
Sbjct: 190 NSPVIVIG 192

[Close]

BLAST of CmaCh12G008030 vs. NCBI nr
Match: gi|802551178|ref|XP_012064659.1| (PREDICTED: lysosomal Pro-X carboxypeptidase-like isoform X2 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-17
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HRFYGKS+PF S E+A+KNASVRG+ NSAQALADYAE++LH+KK F ++
Sbjct: 130 LLVYIE-----HRFYGKSIPFGSQEEAVKNASVRGYFNSAQALADYAEIILHVKKTFDAE 189

Query: 61  TSPIIVIG 69
            SP+IVIG
Sbjct: 190 NSPVIVIG 192

[Close]

BLAST of CmaCh12G008030 vs. NCBI nr
Match: gi|802551174|ref|XP_012064657.1| (PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-17
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1   MLVYLEVGGAKHRFYGKSVPFDSIEKAMKNASVRGHLNSAQALADYAEVLLHIKKMFASQ 60
           +LVY+E     HRFYGKS+PF S E+A+KNASVRG+ NSAQALADYAE++LH+KK F ++
Sbjct: 131 LLVYIE-----HRFYGKSIPFGSQEEAVKNASVRGYFNSAQALADYAEIILHVKKTFDAE 190

Query: 61  TSPIIVIG 69
            SP+IVIG
Sbjct: 191 NSPVIVIG 193

The following BLAST results are available for this feature:

BLAST of CmaCh12G008030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh12G008030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067L640_JATCU	2.9e-17	66.18	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05403 PE=4 SV=1	[more]
A0A068VA33_COFCA	2.5e-16	64.71	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004449001 PE=4 SV=1	[more]
A0A067EVR5_CITSI	1.2e-15	66.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036751mg PE=4 SV=1	[more]
V4TJ70_9ROSI	1.2e-15	66.67	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033696mg PE=4 SV=1	[more]
A0A0B2R699_GLYSO	1.2e-15	63.24	Lysosomal Pro-X carboxypeptidase OS=Glycine soja GN=glysoja_026261 PE=4 SV=1	[more]

BLAST of CmaCh12G008030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22860.1	4.5e-17	57.35	Serine carboxypeptidase S28 family protein	[more]
AT2G24280.1	3.1e-10	45.59	alpha/beta-Hydrolases superfamily protein	[more]
AT5G65760.1	1.3e-08	37.93	Serine carboxypeptidase S28 family protein	[more]

BLAST of CmaCh12G008030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072238\|ref\|XP_008464256.1\|	2.0e-19	77.94	PREDICTED: lysosomal Pro-X carboxypeptidase-like [Cucumis melo]	[more]
gi\|643737948\|gb\|KDP43936.1\|	4.2e-17	66.18	hypothetical protein JCGZ_05403 [Jatropha curcas]	[more]
gi\|802551176\|ref\|XP_012064658.1\|	4.2e-17	66.18	PREDICTED: lysosomal Pro-X carboxypeptidase-like isoform X1 [Jatropha curcas]	[more]
gi\|802551178\|ref\|XP_012064659.1\|	4.2e-17	66.18	PREDICTED: lysosomal Pro-X carboxypeptidase-like isoform X2 [Jatropha curcas]	[more]
gi\|802551174\|ref\|XP_012064657.1\|	4.2e-17	66.18	PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008758	Peptidase_S28

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0008236	serine-type peptidase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004180	carboxypeptidase activity
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0070011	peptidase activity, acting on L-amino acid peptides

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008030.1	CmaCh12G008030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008758	Peptidase S28	PFAM	PF05577	Peptidase_S28	coord: 11..68 score: 6.
None	No IPR available	PANTHER	PTHR11010	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	coord: 1..68 score: 2.4
None	No IPR available	PANTHER	PTHR11010:SF47	PROLYLCARBOXYPEPTIDASE-LIKE PROTEIN-RELATED	coord: 1..68 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G008030	MELO3C004835	Melon (DHL92) v3.5.1	cmameB148
CmaCh12G008030	CmoCh12G008130	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G008030	Lsi03G000710	Bottle gourd (USVL1VR-Ls)	cmalsiB168
CmaCh12G008030	Cp4.1LG07g06790	Cucurbita pepo (Zucchini)	cmacpeB208
CmaCh12G008030	MELO3C004835.2	Melon (DHL92) v3.6.1	cmamedB161
CmaCh12G008030	CsaV3_1G014340	Cucumber (Chinese Long) v3	cmacucB0188
CmaCh12G008030	CsGy1G014110	Cucumber (Gy14) v2	cgybcmaB058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G008030	Wax gourd	cmawgoB0220
CmaCh12G008030	Cucurbita maxima (Rimu)	cmacmaB174
CmaCh12G008030	Cucumber (Gy14) v1	cgycmaB0593
CmaCh12G008030	Cucurbita moschata (Rifu)	cmacmoB179
CmaCh12G008030	Wild cucumber (PI 183967)	cmacpiB163
CmaCh12G008030	Cucumber (Chinese Long) v2	cmacuB163
CmaCh12G008030	Watermelon (97103) v1	cmawmB165
CmaCh12G008030	Cucurbita pepo (Zucchini)	cmacpeB189
CmaCh12G008030	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G008030	Silver-seed gourd	carcmaB0222