CmaCh12G007560 (gene) Cucurbita maxima (Rimu)

NameCmaCh12G007560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCytochrome b reductase 1
LocationCma_Chr12 : 4656813 .. 4658106 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGCCCCTGTTTTTTCAGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAGGGCGAAGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGNNNNNNNNNNAAATACTCCTGGGTGACCGATAGTGAAGTAGTACCGTGA

mRNA sequence

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGNNNNNNNNNNAAATACTCCTGGGTGACCGATAGTGAAGTAGTACCGTGA

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGNNNNNNNNNNAAATACTCCTGGGTGACCGATAGTGAAGTAGTACCGTGA

Protein sequence

MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGVPPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQKVTEACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGXXXKYSWVTDSEVVP
BLAST of CmaCh12G007560 vs. TrEMBL
Match: A0A078C9H5_BRANA (BnaC09g26890D protein OS=Brassica napus GN=BnaC09g26890D PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.8e-65
Identity = 151/230 (65.65%), Postives = 156/230 (67.83%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQKVT----------- 180
                                    EPATEAPVNGGRNYNGPK ++ +            
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAKFLVGPYEASLFPGI 180

Query: 181 --------------EACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVG 202
                             GFLGPDGDWPSSAKA G LTARPTRRAGTKVG
Sbjct: 181 GFGLFLRSLGPTGQGTVSGFLGPDGDWPSSAKAGGGLTARPTRRAGTKVG 204

BLAST of CmaCh12G007560 vs. TrEMBL
Match: A0A078G2W9_BRANA (BnaC09g29220D protein OS=Brassica napus GN=BnaC09g29220D PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.0e-52
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. TrEMBL
Match: A0A078J910_BRANA (BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.0e-52
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. TrEMBL
Match: A0A078E1F1_BRANA (BnaC09g16490D protein OS=Brassica napus GN=BnaC09g16490D PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.0e-52
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. TrEMBL
Match: A0A0D2ZTA2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.0e-52
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. NCBI nr
Match: gi|674961880|emb|CDX71648.1| (BnaC09g26890D [Brassica napus])

HSP 1 Score: 256.5 bits (654), Expect = 4.1e-65
Identity = 151/230 (65.65%), Postives = 156/230 (67.83%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQKVT----------- 180
                                    EPATEAPVNGGRNYNGPK ++ +            
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAKFLVGPYEASLFPGI 180

Query: 181 --------------EACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVG 202
                             GFLGPDGDWPSSAKA G LTARPTRRAGTKVG
Sbjct: 181 GFGLFLRSLGPTGQGTVSGFLGPDGDWPSSAKAGGGLTARPTRRAGTKVG 204

BLAST of CmaCh12G007560 vs. NCBI nr
Match: gi|674913481|emb|CDY19666.1| (BnaC09g29220D [Brassica napus])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. NCBI nr
Match: gi|674871093|emb|CDY63595.1| (BnaUnng00830D [Brassica napus])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. NCBI nr
Match: gi|674913470|emb|CDY19655.1| (BnaC09g29110D [Brassica napus])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGC+NASVGERSAL GS RAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRV----PVPETDTGV 120
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR      V +  TG 
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTG- 120

Query: 121 PPHKGGRSDQARATVYQKHRSPQSREPATEAPVNGGRNYNGPKASQ 163
                                    EPATEAPVNGGRNYNGPK ++
Sbjct: 121 -------------------------EPATEAPVNGGRNYNGPKVAK 140

BLAST of CmaCh12G007560 vs. NCBI nr
Match: gi|643736466|gb|KDP42772.1| (hypothetical protein JCGZ_00471 [Jatropha curcas])

HSP 1 Score: 207.2 bits (526), Expect = 2.8e-50
Identity = 109/115 (94.78%), Postives = 109/115 (94.78%), Query Frame = 1

Query: 1   MNGAKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
           MNGAKRSAEAVGCKNASVGERSALEGSTRAS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 29  MNGAKRSAEAVGCKNASVGERSALEGSTRASRGGRSGSENVGLSNANIGENPMPRKPKGS 88

Query: 61  SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTG 116
           SARFV GGVRRGREN SSQCSSTRRYG EVTHAIL GKARTTFNKRVPVPETD G
Sbjct: 89  SARFVRGGVRRGRENASSQCSSTRRYGTEVTHAILSGKARTTFNKRVPVPETDIG 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A078C9H5_BRANA2.8e-6565.65BnaC09g26890D protein OS=Brassica napus GN=BnaC09g26890D PE=4 SV=1[more]
A0A078G2W9_BRANA8.0e-5272.89BnaC09g29220D protein OS=Brassica napus GN=BnaC09g29220D PE=4 SV=1[more]
A0A078J910_BRANA8.0e-5272.89BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1[more]
A0A078E1F1_BRANA8.0e-5272.89BnaC09g16490D protein OS=Brassica napus GN=BnaC09g16490D PE=4 SV=1[more]
A0A0D2ZTA2_BRAOL8.0e-5272.89Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|674961880|emb|CDX71648.1|4.1e-6565.65BnaC09g26890D [Brassica napus][more]
gi|674913481|emb|CDY19666.1|1.2e-5172.89BnaC09g29220D [Brassica napus][more]
gi|674871093|emb|CDY63595.1|1.2e-5172.89BnaUnng00830D [Brassica napus][more]
gi|674913470|emb|CDY19655.1|1.2e-5172.89BnaC09g29110D [Brassica napus][more]
gi|643736466|gb|KDP42772.1|2.8e-5094.78hypothetical protein JCGZ_00471 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007560.1CmaCh12G007560.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None