CmaCh12G007520 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G007520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGag-pol polyprotein
LocationCma_Chr12 : 4647715 .. 4648053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAATCTCGTTTTACTGCTGTTGCACCACCAATCATCGATGGAGACAATTATCAAATGTGGGCAGTTCGTAAGGAGACTTATTTGGAGGGCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAAAAGGAAAAGAAGACAAGGAAATCAAAGGCGAAAGCTTGCCTATTTGCCGTTGTATCTCAAATGATTTTCATGCGAATAATGTTCCTCAAATCAGTAAAGGAAATCTGGGATTATCTCAAGCCGAATATGAAGGAGATGAGAGGATTCATGGAATGA

mRNA sequence

ATGGAAGAAGAATCTCGTTTTACTGCTGTTGCACCACCAATCATCGATGGAGACAATTATCAAATGTGGGCAGTTCGTAAGGAGACTTATTTGGAGGGCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAAAAGGAAAAGAAGACAAGGAAATCAAAGGCGAAAGCTTGCCTATTTGCCGTTGTATCTCAAATGATTTTCATGCGAATAATGTTCCTCAAATCAGTAAAGGAAATCTGGGATTATCTCAAGCCGAATATGAAGGAGATGAGAGGATTCATGGAATGA

Coding sequence (CDS)

ATGGAAGAAGAATCTCGTTTTACTGCTGTTGCACCACCAATCATCGATGGAGACAATTATCAAATGTGGGCAGTTCGTAAGGAGACTTATTTGGAGGGCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAAAAGGAAAAGAAGACAAGGAAATCAAAGGCGAAAGCTTGCCTATTTGCCGTTGTATCTCAAATGATTTTCATGCGAATAATGTTCCTCAAATCAGTAAAGGAAATCTGGGATTATCTCAAGCCGAATATGAAGGAGATGAGAGGATTCATGGAATGA

Protein sequence

MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKLQKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLKPNMKEMRGFME
Homology
[Close]
BLAST of CmaCh12G007520 vs. TrEMBL
Match: U7E0I4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0200s00210g PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-34
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME E+ F+ ++ PI DG+NYQ+WAV+ ETYL+ +DLWEA+EEDYEV PLP NPTVAQIK 
Sbjct: 653 MEIETSFSHMSSPIFDGENYQLWAVKMETYLDAMDLWEAVEEDYEVHPLPNNPTVAQIKN 712

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
            KE+KTRKSKAKACLFA VS  IF RIM L+SVK++WDYLK
Sbjct: 713 HKERKTRKSKAKACLFAAVSTTIFTRIMSLQSVKDVWDYLK 753

[Close]
BLAST of CmaCh12G007520 vs. TrEMBL
Match: A5ARY3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003274 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME E+ F+ VAPPI DGDNYQ WA+R   +LE LDLWEAIEEDY+VPPLPANPT+ Q+K 
Sbjct: 1   METETTFSHVAPPIFDGDNYQAWAIRMTVHLEALDLWEAIEEDYDVPPLPANPTMTQLKT 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLKPNMKEMRG 110
            KE+KTRKSK KA LF+ VS  IF RIM L+S K+IWDYLK   KE RG
Sbjct: 61  HKERKTRKSKVKAYLFSAVSSTIFTRIMNLESAKDIWDYLK---KEYRG 106

[Close]
BLAST of CmaCh12G007520 vs. TrEMBL
Match: A0A151TTX5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009752 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           M+ ES F+ VAPP+ DG+NY +WAV+ E YLE LDLWEA+E +YEV PLP NPTVAQIK+
Sbjct: 1   MDAESNFSQVAPPVFDGENYDLWAVKMEAYLEALDLWEAVEAEYEVLPLPNNPTVAQIKM 60

Query: 61  QKEKKTRKSKAKAC-LFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           QKE+KTRK+KAK C LFA VSQ IF RIM LKS KEIWDYLK
Sbjct: 61  QKERKTRKAKAKTCLLFAGVSQTIFTRIMTLKSAKEIWDYLK 102

[Close]
BLAST of CmaCh12G007520 vs. TrEMBL
Match: Q69F89_PHAVU (Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA19 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 10  VAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKLQKEKKTRKS 69
           +APP+ DGD+YQMWAVR ETYLE LDLWEA+EEDYE+  LP NPTVAQIK QK+KK ++S
Sbjct: 1   MAPPVFDGDSYQMWAVRMETYLEALDLWEAVEEDYEIQSLPENPTVAQIKSQKDKKMKRS 60

Query: 70  KAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           KAKACLFA VS M+F RIM LKS KEIWDYLK
Sbjct: 61  KAKACLFAAVSPMVFTRIMSLKSAKEIWDYLK 92

[Close]
BLAST of CmaCh12G007520 vs. TrEMBL
Match: A5B779_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000583 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.3e-33
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME E+ F+ VAPPI DGDNYQ WAVR   +LE LDLWEAIEEDY+VPPLPANPT+ Q+K 
Sbjct: 1   MEIETTFSHVAPPIFDGDNYQAWAVRMXVHLEALDLWEAIEEDYDVPPLPANPTMTQLKT 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLKPNMKEMRG 110
            KE+KTRKSKAKA LF VVS  IF RIM L+S K+IWD+LK   KE +G
Sbjct: 61  HKERKTRKSKAKAYLFFVVSSTIFTRIMNLESAKDIWDHLK---KEYQG 106

[Close]
BLAST of CmaCh12G007520 vs. NCBI nr
Match: gi|823180845|ref|XP_012488003.1| (PREDICTED: uncharacterized protein LOC105801218 [Gossypium raimondii])

HSP 1 Score: 176.0 bits (445), Expect = 3.6e-41
Identity = 86/101 (85.15%), Postives = 88/101 (87.13%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME  S F+ VAPP+ DGDNYQMWAVR ETYLE LDLWE IEEDYEVPPLPANPTVAQIK 
Sbjct: 1   MEGGSNFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEPIEEDYEVPPLPANPTVAQIKA 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           QKEKKTRKSKAKACLFA VSQMIF RIM LKS KEIWDYLK
Sbjct: 61  QKEKKTRKSKAKACLFAAVSQMIFTRIMSLKSAKEIWDYLK 101

[Close]
BLAST of CmaCh12G007520 vs. NCBI nr
Match: gi|823166118|ref|XP_012483005.1| (PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii])

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-41
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME  S F+ V PP+ DGDNYQMWAVR ETYLE LDLWE +EEDYEVPPLPANPTVAQIK 
Sbjct: 1   MEGGSNFSVVEPPVFDGDNYQMWAVRMETYLEALDLWEPVEEDYEVPPLPANPTVAQIKA 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           QKEKKTRKSKAKACLFA VSQMIF RIM+LKS KEIWDYLK
Sbjct: 61  QKEKKTRKSKAKACLFAAVSQMIFTRIMYLKSAKEIWDYLK 101

[Close]
BLAST of CmaCh12G007520 vs. NCBI nr
Match: gi|823138359|ref|XP_012469049.1| (PREDICTED: uncharacterized protein LOC105787153 [Gossypium raimondii])

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-41
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME  S F+ VAPP+ DGDNYQMWAVR ETYLE LDLWE +EEDYEVPPLPANPTVAQIK 
Sbjct: 1   MEGGSNFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEPVEEDYEVPPLPANPTVAQIKA 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           QKEKKTRKSKAKACLFA VSQMIF RIM LKS KEIWDYLK
Sbjct: 61  QKEKKTRKSKAKACLFAAVSQMIFTRIMSLKSAKEIWDYLK 101

[Close]
BLAST of CmaCh12G007520 vs. NCBI nr
Match: gi|823145289|ref|XP_012472533.1| (PREDICTED: uncharacterized protein LOC105789716 [Gossypium raimondii])

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-40
Identity = 84/101 (83.17%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME  S F  VAPP+ DGDNYQMWAVR ETYLE LDLWE +EEDYEVPPLPANPTVAQIK 
Sbjct: 1   MEGGSNFLVVAPPVFDGDNYQMWAVRMETYLEALDLWEPVEEDYEVPPLPANPTVAQIKA 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           QKEKKTRKSKAKACLFA VSQMIF RIM LKS  EIWDYLK
Sbjct: 61  QKEKKTRKSKAKACLFAAVSQMIFTRIMSLKSANEIWDYLK 101

[Close]
BLAST of CmaCh12G007520 vs. NCBI nr
Match: gi|823127429|ref|XP_012435705.1| (PREDICTED: uncharacterized protein LOC105762447 [Gossypium raimondii])

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-38
Identity = 81/101 (80.20%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MEEESRFTAVAPPIIDGDNYQMWAVRKETYLEGLDLWEAIEEDYEVPPLPANPTVAQIKL 60
           ME ES F+  APP+ DGDNYQMWAVR ETYLE LDLWEA+EEDYEVPPL ANP+VAQIK 
Sbjct: 1   MEGESSFSVAAPPVFDGDNYQMWAVRMETYLEALDLWEAVEEDYEVPPLLANPSVAQIKA 60

Query: 61  QKEKKTRKSKAKACLFAVVSQMIFMRIMFLKSVKEIWDYLK 102
           QKE K RKSK KACLFA VSQMIF RIM LKS KEIWDYLK
Sbjct: 61  QKENKIRKSKEKACLFAAVSQMIFTRIMSLKSAKEIWDYLK 101

The following BLAST results are available for this feature:
BLAST of CmaCh12G007520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G007520 vs. TrEMBL
Match NameE-valueIdentityDescription
U7E0I4_POPTR8.7e-3470.30Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0200s00210g PE=3 SV=1[more]
A5ARY3_VITVI1.1e-3367.89Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003274 PE=4 SV=1[more]
A0A151TTX5_CAJCA1.1e-3371.57Uncharacterized protein OS=Cajanus cajan GN=KK1_009752 PE=4 SV=1[more]
Q69F89_PHAVU1.9e-3376.09Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA19 PE=4 SV=1[more]
A5B779_VITVI4.3e-3368.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000583 PE=4 SV=1[more]
BLAST of CmaCh12G007520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G007520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|823180845|ref|XP_012488003.1|3.6e-4185.15PREDICTED: uncharacterized protein LOC105801218 [Gossypium raimondii][more]
gi|823166118|ref|XP_012483005.1|4.7e-4183.17PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii][more]
gi|823138359|ref|XP_012469049.1|4.7e-4184.16PREDICTED: uncharacterized protein LOC105787153 [Gossypium raimondii][more]
gi|823145289|ref|XP_012472533.1|3.1e-4083.17PREDICTED: uncharacterized protein LOC105789716 [Gossypium raimondii][more]
gi|823127429|ref|XP_012435705.1|2.2e-3880.20PREDICTED: uncharacterized protein LOC105762447 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007520.1CmaCh12G007520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..101
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G007520Watermelon (97103) v2cmawmbB204
CmaCh12G007520Wax gourdcmawgoB0191
CmaCh12G007520Cucurbita maxima (Rimu)cmacmaB006
CmaCh12G007520Cucurbita maxima (Rimu)cmacmaB197
CmaCh12G007520Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G007520Cucurbita moschata (Rifu)cmacmoB178
CmaCh12G007520Cucurbita moschata (Rifu)cmacmoB197
CmaCh12G007520Watermelon (Charleston Gray)cmawcgB141
CmaCh12G007520Watermelon (97103) v1cmawmB146
CmaCh12G007520Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G007520Cucurbita pepo (Zucchini)cmacpeB207
CmaCh12G007520Bottle gourd (USVL1VR-Ls)cmalsiB167