CmaCh12G006840 (gene) Cucurbita maxima (Rimu)

NameCmaCh12G006840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSer/Thr-rich protein T10 in DGCR region
LocationCma_Chr12 : 3707801 .. 3710388 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACATCACGACGAGAGAGATTCTAAAAGAATATATATTTGATGGTTGGCAATCATTCATTGGTTTGGTTAATAGCCTAAGGTTTTTCCAAATTCTAAACCTAAGCAACATTAATTCCTTTCATTTTTTTATCATATAAATTTGCATCATAACTCCTTAGTATTTCTAATGGTCAAACAACACCACCTTTCAATTTCTTTTCTAAACAAATCAATTATTGTAAAGCTGGCGTAACAAATCATACACAATTTTCCTCCAAAATCAATCAAAATTCCCTCGGCCCAATAACGTTTCTCCACCCGTCCCTTAATTTATTATATCATATTCATCGATGATACATGTTAATTACTTTTAAATGGGTTATAAAAATTATATTTGTTTTGTTCCATAATTTGTTACATTTGCTATTTTCTACTCGGGTTTGAGAGTATTAAAACCCTATCATATTTGAGTCTTAGAGTGTGGACCAAAAAAGCACGTGGGCACGTCTACGTAATCAAAGAGACGAGACAAGAAATTCATCCACGATAATGTTTTGAACTCATGAGCTAAAGAGAGATCTAACATGTTTTTTAATTATATAAAATATGTCATTGGCAAAGAATTAACTTCAATTTGATAGGCTATGCATATAAAATATGGCATCGAGATCGTGTAATGCTACCATTTTAATCGTATAAAATATTTTGATTTTAGAAGGGGTTGAATAACTCAAAATGGATATCAAATAAAAAGCTTGGAAAGCAAGAATGTCCACAAAAAGTAAAGTGGAATACACGCATAACAATGACACATGACACATCCAGAGTTAATCATATAGCACATTATGATACAATGATTGGGCAATTATTGATATATAATAATACTAAAAAAATATATTTATAATACGTTTGATATCGTACTCAAATAAAATAACATCAATTAAAAAATTGAGTATTACTTGTTATGCACAAGTTACTCACGAATAGCTTTAATTGTACGCTCTGAATAAGACTTTTTTACTCAAACTAACCAACTCAAAACTCTAAATACGGATTATTTAACTCACATAATGAATAACTCCACGAATTGAATAACTTTAATAACTTTATGAGCATCCATCAAAGACAGCAGGCTGCTGGATTTGTTATGGCCGACTTTACTGAACAAAAAAAATTAAGAACTTTGATGGAACAAAACCTAAATTTTAAGACTTAGATAGAGATAAAATCTAATGTGGTGGCGTAATTGTCTGATTCAAAATCATATAAATGCACCCACTGATTATTGCTCAGGCAAGAGCAGTGAAGTCTCTGGTTTTTAAACTGGTTGTGTTGCTGATCATAGTATATCCTACCCAGCATTCCTTCAACGCAGCTGATACTCAACAATTGGTATCCTTTGTTTATTTATTTCTTTTCCAGTACTTAGTTCCTGTTTTCCATGTTGTGGTAAGAATATGGATTTTGCTTTTAAAAAATGAACTGTTTTTGAAACATTTATCATGGAATTGAGTAGGTTGGAGTGGGGAACGATACAGAGGAATTGAGTTGAATATGTGGTTCTGATGAGATCCCACGTAGGTTGGAGTGGGGAACGATACAGAAGAATTGAGTTGAATATGTGGTTCTGGTGAGATCCCACGTAGGTTGGAGTGGGGAACGAAACATTCTGTATAAGAGTATGAAAACTCTCCCTAGCAGATACATTTTAAAACTTCGAGGGGAAGCCCAAAAGGGAACGTCCAAAGAGGACAATATTTGTTAGCTGTGATCTTAGGCCGTTACAAATGGTATTAGAGCTAGACACGGGGCGATGTGCCAGCAAAGAGGTTGAGCCCGGAAGGGGGTGGACATGAGGTGGTATGCCATCAAGGATGTTGGACCTTAAAGAGGGGTGATTAGGGGGTCCCATAATGATTGAAGGGAACGAGTGTCAATAAAAACGCTGGGCCCCAAATGGAGTAGACTGTGAGATCACACCTCGGTTGAAGAAGGAAACAAAACATTTTTTTATGTTTTTTATAAAGGAGTAAAACCTCATGTTTTGTTTTTTTATAAGGGAGTAAAACCTCTCCCTAGCATGTCTGTTAGTGGCCTTGCGAGGACAAAGAATGTTCAAGGAAAGGTAGGGTTGCATTGGTTACTAATGTGTTGGAACTTGATGTCCTACCTGAGACCAAAAGCCATGGAAATGTTCCCGTTGACAGGAAAGGCAGGATTAAAGCCATTTACATTATTCTCACTCATTGACAGAATACTTTTAATAACAAAGCACACAGAGTCCAAAGGAATTTGCAGAGGAGACAAAGGCAGAAGCATACCAGTATAATGGGTTTATCTCGACATTTGTTCAAAAACCATGGTACACATTTCCAACAGATCAAAAGGGGAACGAACACATTTTGATTCAGGAGGTTCCTCCTGGTTTACATGTGCTGTCTAATGAAGAGCTTCATTCTCTTGGCATAAGGTTTCTAAACATTATTCAAGCCATATAACAATATATTCAGATATAAGAAGCAAAAAGGACAAGGAAAAATGAAGGATGGAAGAAAGATAAGATAGTTAGTGGCCGATTGCTTCGACTTTCTACAGGCACAGAGCTTGA

mRNA sequence

AACATCACGACGAGAGAGATTCTAAAAGAATATATATTTGATGGTTGGCAATCATTCATTGGTTTGGTTAATAGCCTAAGTATTTCTAATGGTCAAACAACACCACCTTTCAATTTCTTTTCTAAACAAATCAATTATTGTAAAGCTGGCAAGGGGTTGAATAACTCAAAATGGATATCAAATAAAAAGCTTGGAAAGCAAGAATGTCCACAAAAAGCAAGAGCAGTGAAGTCTCTGGTTTTTAAACTGGTTGTGTTGCTGATCATAGTATATCCTACCCAGCATTCCTTCAACGCAGCTGATACTCAACAATTGGTATCCTTTGTTTATTTATTTCTTTTCCAGTACTTAGTTCCTGTTTTCCATGTTGTGTGGCCTTGCGAGGACAAAGAATGTTCAAGGAAAGGTAGGGTTGCATTGGTTACTAATGTGTTGGAACTTGATGTCCTACCTGAGACCAAAAGCCATGGAAATGTTCCCAGTCCAAAGGAATTTGCAGAGGAGACAAAGGCAGAAGCATACCAGTATAATGGGTTTATCTCGACATTTGTTCAAAAACCATGGTACACATTTCCAACAGATCAAAAGGGGAACGAACACATTTTGATTCAGGAGGTTCCTCCTGGTTTACATGTGCTGTCTAATGAAGAGCTTCATTCTCTTGGCATAAGGCACAGAGCTTGA

Coding sequence (CDS)

AACATCACGACGAGAGAGATTCTAAAAGAATATATATTTGATGGTTGGCAATCATTCATTGGTTTGGTTAATAGCCTAAGTATTTCTAATGGTCAAACAACACCACCTTTCAATTTCTTTTCTAAACAAATCAATTATTGTAAAGCTGGCAAGGGGTTGAATAACTCAAAATGGATATCAAATAAAAAGCTTGGAAAGCAAGAATGTCCACAAAAAGCAAGAGCAGTGAAGTCTCTGGTTTTTAAACTGGTTGTGTTGCTGATCATAGTATATCCTACCCAGCATTCCTTCAACGCAGCTGATACTCAACAATTGGTATCCTTTGTTTATTTATTTCTTTTCCAGTACTTAGTTCCTGTTTTCCATGTTGTGTGGCCTTGCGAGGACAAAGAATGTTCAAGGAAAGGTAGGGTTGCATTGGTTACTAATGTGTTGGAACTTGATGTCCTACCTGAGACCAAAAGCCATGGAAATGTTCCCAGTCCAAAGGAATTTGCAGAGGAGACAAAGGCAGAAGCATACCAGTATAATGGGTTTATCTCGACATTTGTTCAAAAACCATGGTACACATTTCCAACAGATCAAAAGGGGAACGAACACATTTTGATTCAGGAGGTTCCTCCTGGTTTACATGTGCTGTCTAATGAAGAGCTTCATTCTCTTGGCATAAGGCACAGAGCTTGA

Protein sequence

NITTREILKEYIFDGWQSFIGLVNSLSISNGQTTPPFNFFSKQINYCKAGKGLNNSKWISNKKLGKQECPQKARAVKSLVFKLVVLLIIVYPTQHSFNAADTQQLVSFVYLFLFQYLVPVFHVVWPCEDKECSRKGRVALVTNVLELDVLPETKSHGNVPSPKEFAEETKAEAYQYNGFISTFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHSLGIRHRA
BLAST of CmaCh12G006840 vs. TrEMBL
Match: A0A0A0LSJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144330 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.2e-19
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           CSRKG+VA VTNVLE   +P+ KS G++P        SPKEFAEE KAEAYQYNGF  I 
Sbjct: 194 CSRKGKVAFVTNVLEPHEIPDAKSRGHLPLLFLQSTKSPKEFAEEIKAEAYQYNGFNLIV 253

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEEL 219
             +      + +++   +HILIQEVPPGLHVLSN EL
Sbjct: 254 ADISTKTMIYISNRTKGDHILIQEVPPGLHVLSNAEL 290

BLAST of CmaCh12G006840 vs. TrEMBL
Match: C6T8N2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF---I 191
           CS +GRVA +TNVLEL  LPE KS G++P         PKEFAE  K+EA+ YNGF   +
Sbjct: 56  CSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIV 115

Query: 192 STFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
           +  V           KG + I IQEVPPGLHVLSN++L S
Sbjct: 116 ADIVSNSMVYISNRPKG-QPITIQEVPPGLHVLSNDKLDS 154

BLAST of CmaCh12G006840 vs. TrEMBL
Match: I1JVG6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF---I 191
           CS +GRVA +TNVLEL  LPE KS G++P         PKEFAE  K+EA+ YNGF   +
Sbjct: 56  CSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIV 115

Query: 192 STFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
           +  V           KG + I IQEVPPGLHVLSN++L S
Sbjct: 116 ADIVSNSMVYISNRPKG-QPITIQEVPPGLHVLSNDKLDS 154

BLAST of CmaCh12G006840 vs. TrEMBL
Match: I1JVG5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF---I 191
           CS +GRVA +TNVLEL  LPE KS G++P         PKEFAE  K+EA+ YNGF   +
Sbjct: 56  CSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIV 115

Query: 192 STFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
           +  V           KG + I IQEVPPGLHVLSN++L S
Sbjct: 116 ADIVSNSMVYISNRPKG-QPITIQEVPPGLHVLSNDKLDS 154

BLAST of CmaCh12G006840 vs. TrEMBL
Match: A0A0B2QJ37_GLYSO (Ser/Thr-rich protein T10 in DGCR region OS=Glycine soja GN=glysoja_024843 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF---I 191
           CS +GRVA +TNVLEL  LPE KS G++P         PKEFAE  K+EA+ YNGF   +
Sbjct: 57  CSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIV 116

Query: 192 STFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
           +  V           KG + I IQEVPPGLHVLSN++L S
Sbjct: 117 ADIVSNSMVYISNRPKG-QPITIQEVPPGLHVLSNDKLDS 155

BLAST of CmaCh12G006840 vs. TAIR10
Match: AT4G38260.1 (AT4G38260.1 Protein of unknown function (DUF833))

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           C+R GR+A +TN  E    P  KS G++P        SP EFAEE + E   YNGF  + 
Sbjct: 56  CTRHGRLAFLTNFKEASSFPAAKSRGDLPLRYLQSEKSPAEFAEEIQDEISLYNGFNLVV 115

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
             V      + T++  +   L+ +V PG+HVLSN  L S
Sbjct: 116 AHVLSKSMIYITNRPPHGDKLVTQVSPGIHVLSNANLDS 154

BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|659071853|ref|XP_008462227.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           CSRKG+VA VTNVLE   +PE KS GN+P        SPKEFAEE KAEAY+YNGF  + 
Sbjct: 56  CSRKGKVAFVTNVLEPHEIPEAKSRGNLPLLFLQSTKSPKEFAEEIKAEAYRYNGFNLVV 115

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
             +      + +++   +HILIQEVPPGLHVLSN EL S
Sbjct: 116 ADISTKTMVYISNRTKGDHILIQEVPPGLHVLSNAELDS 154

BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|659071849|ref|XP_008462211.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           CSRKG+VA VTNVLE   +PE KS GN+P        SPKEFAEE KAEAY+YNGF  + 
Sbjct: 56  CSRKGKVAFVTNVLEPHEIPEAKSRGNLPLLFLQSTKSPKEFAEEIKAEAYRYNGFNLVV 115

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHS 221
             +      + +++   +HILIQEVPPGLHVLSN EL S
Sbjct: 116 ADISTKTMVYISNRTKGDHILIQEVPPGLHVLSNAELDS 154

BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|778659310|ref|XP_011654174.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           CSRKG+VA VTNVLE   +P+ KS G++P        SPKEFAEE KAEAYQYNGF  I 
Sbjct: 56  CSRKGKVAFVTNVLEPHEIPDAKSRGHLPLLFLQSTKSPKEFAEEIKAEAYQYNGFNLIV 115

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEEL 219
             +      + +++   +HILIQEVPPGLHVLSN EL
Sbjct: 116 ADISTKTMIYISNRTKGDHILIQEVPPGLHVLSNAEL 152

BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|778659324|ref|XP_011654190.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           CSRKG+VA VTNVLE   +P+ KS G++P        SPKEFAEE KAEAYQYNGF  I 
Sbjct: 56  CSRKGKVAFVTNVLEPHEIPDAKSRGHLPLLFLQSTKSPKEFAEEIKAEAYQYNGFNLIV 115

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEEL 219
             +      + +++   +HILIQEVPPGLHVLSN EL
Sbjct: 116 ADISTKTMIYISNRTKGDHILIQEVPPGLHVLSNAEL 152

BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|700209784|gb|KGN64880.1| (hypothetical protein Csa_1G144330 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1

Query: 132 CSRKGRVALVTNVLELDVLPETKSHGNVP--------SPKEFAEETKAEAYQYNGF--IS 191
           CSRKG+VA VTNVLE   +P+ KS G++P        SPKEFAEE KAEAYQYNGF  I 
Sbjct: 194 CSRKGKVAFVTNVLEPHEIPDAKSRGHLPLLFLQSTKSPKEFAEEIKAEAYQYNGFNLIV 253

Query: 192 TFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEEL 219
             +      + +++   +HILIQEVPPGLHVLSN EL
Sbjct: 254 ADISTKTMIYISNRTKGDHILIQEVPPGLHVLSNAEL 290

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LSJ0_CUCSA7.2e-1956.70Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144330 PE=4 SV=1[more]
C6T8N2_SOYBN3.7e-1551.00Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=2 SV=1[more]
I1JVG6_SOYBN3.7e-1551.00Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=4 SV=1[more]
I1JVG5_SOYBN3.7e-1551.00Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=4 SV=1[more]
A0A0B2QJ37_GLYSO3.7e-1551.00Ser/Thr-rich protein T10 in DGCR region OS=Glycine soja GN=glysoja_024843 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT4G38260.11.1e-1038.38 Protein of unknown function (DUF833)[more]
Match NameE-valueIdentityDescription
gi|659071853|ref|XP_008462227.1|1.6e-1956.57PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis melo][more]
gi|659071849|ref|XP_008462211.1|1.6e-1956.57PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis melo][more]
gi|778659310|ref|XP_011654174.1|1.0e-1856.70PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis sativu... [more]
gi|778659324|ref|XP_011654190.1|1.0e-1856.70PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis sativu... [more]
gi|700209784|gb|KGN64880.1|1.0e-1856.70hypothetical protein Csa_1G144330 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G006840.1CmaCh12G006840.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None