CmaCh12G006840 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.AACATCACGACGAGAGAGATTCTAAAAGAATATATATTTGATGGTTGGCAATCATTCATTGGTTTGGTTAATAGCCTAAGGTTTTTCCAAATTCTAAACCTAAGCAACATTAATTCCTTTCATTTTTTTATCATATAAATTTGCATCATAACTCCTTAGTATTTCTAATGGTCAAACAACACCACCTTTCAATTTCTTTTCTAAACAAATCAATTATTGTAAAGCTGGCGTAACAAATCATACACAATTTTCCTCCAAAATCAATCAAAATTCCCTCGGCCCAATAACGTTTCTCCACCCGTCCCTTAATTTATTATATCATATTCATCGATGATACATGTTAATTACTTTTAAATGGGTTATAAAAATTATATTTGTTTTGTTCCATAATTTGTTACATTTGCTATTTTCTACTCGGGTTTGAGAGTATTAAAACCCTATCATATTTGAGTCTTAGAGTGTGGACCAAAAAAGCACGTGGGCACGTCTACGTAATCAAAGAGACGAGACAAGAAATTCATCCACGATAATGTTTTGAACTCATGAGCTAAAGAGAGATCTAACATGTTTTTTAATTATATAAAATATGTCATTGGCAAAGAATTAACTTCAATTTGATAGGCTATGCATATAAAATATGGCATCGAGATCGTGTAATGCTACCATTTTAATCGTATAAAATATTTTGATTTTAGAAGGGGTTGAATAACTCAAAATGGATATCAAATAAAAAGCTTGGAAAGCAAGAATGTCCACAAAAAGTAAAGTGGAATACACGCATAACAATGACACATGACACATCCAGAGTTAATCATATAGCACATTATGATACAATGATTGGGCAATTATTGATATATAATAATACTAAAAAAATATATTTATAATACGTTTGATATCGTACTCAAATAAAATAACATCAATTAAAAAATTGAGTATTACTTGTTATGCACAAGTTACTCACGAATAGCTTTAATTGTACGCTCTGAATAAGACTTTTTTACTCAAACTAACCAACTCAAAACTCTAAATACGGATTATTTAACTCACATAATGAATAACTCCACGAATTGAATAACTTTAATAACTTTATGAGCATCCATCAAAGACAGCAGGCTGCTGGATTTGTTATGGCCGACTTTACTGAACAAAAAAAATTAAGAACTTTGATGGAACAAAACCTAAATTTTAAGACTTAGATAGAGATAAAATCTAATGTGGTGGCGTAATTGTCTGATTCAAAATCATATAAATGCACCCACTGATTATTGCTCAGGCAAGAGCAGTGAAGTCTCTGGTTTTTAAACTGGTTGTGTTGCTGATCATAGTATATCCTACCCAGCATTCCTTCAACGCAGCTGATACTCAACAATTGGTATCCTTTGTTTATTTATTTCTTTTCCAGTACTTAGTTCCTGTTTTCCATGTTGTGGTAAGAATATGGATTTTGCTTTTAAAAAATGAACTGTTTTTGAAACATTTATCATGGAATTGAGTAGGTTGGAGTGGGGAACGATACAGAGGAATTGAGTTGAATATGTGGTTCTGATGAGATCCCACGTAGGTTGGAGTGGGGAACGATACAGAAGAATTGAGTTGAATATGTGGTTCTGGTGAGATCCCACGTAGGTTGGAGTGGGGAACGAAACATTCTGTATAAGAGTATGAAAACTCTCCCTAGCAGATACATTTTAAAACTTCGAGGGGAAGCCCAAAAGGGAACGTCCAAAGAGGACAATATTTGTTAGCTGTGATCTTAGGCCGTTACAAATGGTATTAGAGCTAGACACGGGGCGATGTGCCAGCAAAGAGGTTGAGCCCGGAAGGGGGTGGACATGAGGTGGTATGCCATCAAGGATGTTGGACCTTAAAGAGGGGTGATTAGGGGGTCCCATAATGATTGAAGGGAACGAGTGTCAATAAAAACGCTGGGCCCCAAATGGAGTAGACTGTGAGATCACACCTCGGTTGAAGAAGGAAACAAAACATTTTTTTATGTTTTTTATAAAGGAGTAAAACCTCATGTTTTGTTTTTTTATAAGGGAGTAAAACCTCTCCCTAGCATGTCTGTTAGTGGCCTTGCGAGGACAAAGAATGTTCAAGGAAAGGTAGGGTTGCATTGGTTACTAATGTGTTGGAACTTGATGTCCTACCTGAGACCAAAAGCCATGGAAATGTTCCCGTTGACAGGAAAGGCAGGATTAAAGCCATTTACATTATTCTCACTCATTGACAGAATACTTTTAATAACAAAGCACACAGAGTCCAAAGGAATTTGCAGAGGAGACAAAGGCAGAAGCATACCAGTATAATGGGTTTATCTCGACATTTGTTCAAAAACCATGGTACACATTTCCAACAGATCAAAAGGGGAACGAACACATTTTGATTCAGGAGGTTCCTCCTGGTTTACATGTGCTGTCTAATGAAGAGCTTCATTCTCTTGGCATAAGGTTTCTAAACATTATTCAAGCCATATAACAATATATTCAGATATAAGAAGCAAAAAGGACAAGGAAAAATGAAGGATGGAAGAAAGATAAGATAGTTAGTGGCCGATTGCTTCGACTTTCTACAGGCACAGAGCTTGA AACATCACGACGAGAGAGATTCTAAAAGAATATATATTTGATGGTTGGCAATCATTCATTGGTTTGGTTAATAGCCTAAGTATTTCTAATGGTCAAACAACACCACCTTTCAATTTCTTTTCTAAACAAATCAATTATTGTAAAGCTGGCAAGGGGTTGAATAACTCAAAATGGATATCAAATAAAAAGCTTGGAAAGCAAGAATGTCCACAAAAAGCAAGAGCAGTGAAGTCTCTGGTTTTTAAACTGGTTGTGTTGCTGATCATAGTATATCCTACCCAGCATTCCTTCAACGCAGCTGATACTCAACAATTGGTATCCTTTGTTTATTTATTTCTTTTCCAGTACTTAGTTCCTGTTTTCCATGTTGTGTGGCCTTGCGAGGACAAAGAATGTTCAAGGAAAGGTAGGGTTGCATTGGTTACTAATGTGTTGGAACTTGATGTCCTACCTGAGACCAAAAGCCATGGAAATGTTCCCAGTCCAAAGGAATTTGCAGAGGAGACAAAGGCAGAAGCATACCAGTATAATGGGTTTATCTCGACATTTGTTCAAAAACCATGGTACACATTTCCAACAGATCAAAAGGGGAACGAACACATTTTGATTCAGGAGGTTCCTCCTGGTTTACATGTGCTGTCTAATGAAGAGCTTCATTCTCTTGGCATAAGGCACAGAGCTTGA AACATCACGACGAGAGAGATTCTAAAAGAATATATATTTGATGGTTGGCAATCATTCATTGGTTTGGTTAATAGCCTAAGTATTTCTAATGGTCAAACAACACCACCTTTCAATTTCTTTTCTAAACAAATCAATTATTGTAAAGCTGGCAAGGGGTTGAATAACTCAAAATGGATATCAAATAAAAAGCTTGGAAAGCAAGAATGTCCACAAAAAGCAAGAGCAGTGAAGTCTCTGGTTTTTAAACTGGTTGTGTTGCTGATCATAGTATATCCTACCCAGCATTCCTTCAACGCAGCTGATACTCAACAATTGGTATCCTTTGTTTATTTATTTCTTTTCCAGTACTTAGTTCCTGTTTTCCATGTTGTGTGGCCTTGCGAGGACAAAGAATGTTCAAGGAAAGGTAGGGTTGCATTGGTTACTAATGTGTTGGAACTTGATGTCCTACCTGAGACCAAAAGCCATGGAAATGTTCCCAGTCCAAAGGAATTTGCAGAGGAGACAAAGGCAGAAGCATACCAGTATAATGGGTTTATCTCGACATTTGTTCAAAAACCATGGTACACATTTCCAACAGATCAAAAGGGGAACGAACACATTTTGATTCAGGAGGTTCCTCCTGGTTTACATGTGCTGTCTAATGAAGAGCTTCATTCTCTTGGCATAAGGCACAGAGCTTGA NITTREILKEYIFDGWQSFIGLVNSLSISNGQTTPPFNFFSKQINYCKAGKGLNNSKWISNKKLGKQECPQKARAVKSLVFKLVVLLIIVYPTQHSFNAADTQQLVSFVYLFLFQYLVPVFHVVWPCEDKECSRKGRVALVTNVLELDVLPETKSHGNVPSPKEFAEETKAEAYQYNGFISTFVQKPWYTFPTDQKGNEHILIQEVPPGLHVLSNEELHSLGIRHRA
BLAST of CmaCh12G006840 vs. TrEMBL
Match: A0A0A0LSJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144330 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 7.2e-19 Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
BLAST of CmaCh12G006840 vs. TrEMBL
Match: C6T8N2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=2 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15 Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of CmaCh12G006840 vs. TrEMBL
Match: I1JVG6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15 Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of CmaCh12G006840 vs. TrEMBL
Match: I1JVG5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G104100 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15 Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of CmaCh12G006840 vs. TrEMBL
Match: A0A0B2QJ37_GLYSO (Ser/Thr-rich protein T10 in DGCR region OS=Glycine soja GN=glysoja_024843 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15 Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1
BLAST of CmaCh12G006840 vs. TAIR10
Match: AT4G38260.1 (AT4G38260.1 Protein of unknown function (DUF833)) HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10 Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 1
BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|659071853|ref|XP_008462227.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis melo]) HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19 Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|659071849|ref|XP_008462211.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis melo]) HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19 Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|778659310|ref|XP_011654174.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X1 [Cucumis sativus]) HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18 Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|778659324|ref|XP_011654190.1| (PREDICTED: transport and Golgi organization 2 homolog isoform X2 [Cucumis sativus]) HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18 Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
BLAST of CmaCh12G006840 vs. NCBI nr
Match: gi|700209784|gb|KGN64880.1| (hypothetical protein Csa_1G144330 [Cucumis sativus]) HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18 Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |