CmaCh12G006100 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G006100
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLRR receptor-like kinase
LocationCma_Chr12 : 3204275 .. 3205894 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCCTGGCTTGTTGGACGTGGAGATTTCGTAAAAAAGCTATATTCGGTGCGGCTAGGGTTTCGAAACAGAATCTTTGAAGAACTAGGGTTTGTTGTTCTTTATAAATCGCGCCATTGAATCAAAACGAGTGCATTGCCGTTCTTTCCACTGCCCTACGCTAAGTTTGTTCAACCTTTTCTCTCCGTGCTTGCTCTATTTTTTTGTTTCGCACATTGGAGATCTAATTGGCTCTTTCCTCCCGCTTTTTGCCATTTAGAAACGGATGCTGTGATATAATTTCTCAGATAGTTAAGATCTAATTGGTTCTGTGTTCGTATATCTTTCTAGAATCTTGATATCTTTTTGTTGAATTCTTCAAGTTGGTGAAAGCATTTTTATTGGATGATTCATTCGGTGAAGTTATTCAATCTGTTCTTCGATGCGTATGATAAGGCTTGGTTGCGATGATTATAAAATTTTTATGTTCTGAATGCTAATGCCATGGCATGACAGACACTTTACACCCATAGAATATGAGCATCGTGCCTTAATTTTTTTTTTTTTCAATACTCTTTGGTTCTGTTCTTCTCTGCTTTACTTTACTGGAATTGTCCTTAAAAGATTATACCTCTAGCTTCATTAGATTCAATCTGTTCTTCGATGCGTATGATAAGGCTTGGTTGCGATGATTATAAAATTTAAATGTTCTGAATGCTAATGCCATGGCATGACAGACACTTTACACCCATAGAATATGAGCATCGTGCCTTAAATCTGTTTTTTTAGTACTCTGGTTCTGTTCTTCTCTGCTTTACTTTACTGGATTCTTCCTCAAAAGATTATACCTCTAGCTTCATTAGATTCACTCGTTTCATTTAGTTCGTGTTTGATTAATTTGATTGACTGAGATTCGAGTTGAATATATGTAGCTGTATTATTGATTTGTTTGTTACTCTAGTTTTGAGGGAGAACCATTCTTGTTCTAATTGTTGGATGAAAATCTATCTGATAATTTAGGGATGATCATAGAGGGAATGATCATGGATTTATAATCAAGTAATTCTCTCTATTGGTAATGAGACCATTTGAGGAAGCTTAAAACAAAACAACAGAGAGTTTATGACAATATCACAATACTATGGAGAGTAGTGTTAATCATGTCCTAAACTTAGCTATGTCAATAGAATCCTTATTCAAATGTTGAACAGAAGATTGCAAACTAAGACTTCAAAAGAAAACCTTAATTAAGGGTAGGCGTATTCTTTCGTTTCTCGACGGTGAAGTAAGACTAAGCTCATGAGCTTATTATCCTAGGTCGGAACAAGTTGATAGGATCCCCTTTTTTACGTCCCCATGTCCCTCCCGTGTGGCGACATGGGGGCGAAAAAAGGAAAGAGAGNTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGA

mRNA sequence

ATGTCAGCCTGGCTTGTTGGACGTGGAGATTTCGTAAAAAAGCTATATTCGGTGCGGCTAGGGTTTCGAAACAGAATCTTTGAAGAACTAGGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCGCGAGGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGA

Coding sequence (CDS)

ATGTCAGCCTGGCTTGTTGGACGTGGAGATTTCGTAAAAAAGCTATATTCGGTGCGGCTAGGGTTTCGAAACAGAATCTTTGAAGAACTAGGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCGCGAGGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGA

Protein sequence

MSAWLVGRGDFVKKLYSVRLGFRNRIFEELGLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARAATRLHEAGIASNRRSAIRR
Homology
[Close]
BLAST of CmaCh12G006100 vs. TrEMBL
Match: A0A0A0L3L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438540 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1 

Query: 32 LPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARAATRLHEAGIAS 82
          L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+AATRLHE GIAS
Sbjct: 4  LSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIAS 53

[Close]
BLAST of CmaCh12G006100 vs. TrEMBL
Match: A0A0P6BHN8_9CRUS (Uncharacterized protein OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 44/69 (63.77%), Postives = 46/69 (66.67%), Query Frame = 1 

Query: 32  LPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPAR--------------AATRLHEA 87
           LPV +RRKV MTSS HAPY LGDTR TM GTKG + AR              AATRLHE 
Sbjct: 107 LPVTNRRKVGMTSSPHAPYVLGDTRTTMVGTKGSELARASESQQTRPQFRLQAATRLHEG 166

[Close]
BLAST of CmaCh12G006100 vs. TrEMBL
Match: A0A078H6E8_BRANA (BnaC06g07050D protein OS=Brassica napus GN=BnaC06g07050D PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

Query: 33  PVISRRKVRMTSSHHAPYALGDTRATMA 61
           PVISRRKVRMTSSHHAPYALGDTRATMA
Sbjct: 77  PVISRRKVRMTSSHHAPYALGDTRATMA 104

[Close]
BLAST of CmaCh12G006100 vs. TrEMBL
Match: A0A0P6IJ68_9CRUS (Uncharacterized protein OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.0e-06
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 30 LGLPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARAATRLHEAGIASNR 84
          +GLPV +RRKV MTSSHH PY  G TR TMAGT+G  PAR  ++ H+A  + +R
Sbjct: 1  MGLPVTNRRKVGMTSSHHGPYVRGYTRHTMAGTEGCQPAR-GSQSHKASRSPDR 53

[Close]
BLAST of CmaCh12G006100 vs. NCBI nr
Match: gi|700199578|gb|KGN54736.1| (hypothetical protein Csa_4G438540 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 1 

Query: 32 LPVISRRKVRMTSSHHAPYALGDTRATMAGTKGRDPARAATRLHEAGIAS 82
          L VIS+RKVRM SSHHAPYALGDTR  MAGTK  DPA+AATRLHE GIAS
Sbjct: 4  LSVISQRKVRMMSSHHAPYALGDTRVIMAGTKSCDPAKAATRLHEVGIAS 53

[Close]
BLAST of CmaCh12G006100 vs. NCBI nr
Match: gi|674899875|emb|CDY33074.1| (BnaC06g07050D [Brassica napus])

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

Query: 33  PVISRRKVRMTSSHHAPYALGDTRATMA 61
           PVISRRKVRMTSSHHAPYALGDTRATMA
Sbjct: 77  PVISRRKVRMTSSHHAPYALGDTRATMA 104

The following BLAST results are available for this feature:
BLAST of CmaCh12G006100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G006100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3L9_CUCSA1.5e-1282.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438540 PE=4 SV=1[more]
A0A0P6BHN8_9CRUS1.1e-1063.77Uncharacterized protein OS=Daphnia magna PE=4 SV=1[more]
A0A078H6E8_BRANA2.7e-06100.00BnaC06g07050D protein OS=Brassica napus GN=BnaC06g07050D PE=4 SV=1[more]
A0A0P6IJ68_9CRUS8.0e-0657.41Uncharacterized protein OS=Daphnia magna PE=4 SV=1[more]
BLAST of CmaCh12G006100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G006100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199578|gb|KGN54736.1|2.2e-1282.00hypothetical protein Csa_4G438540 [Cucumis sativus][more]
gi|674899875|emb|CDY33074.1|3.9e-06100.00BnaC06g07050D [Brassica napus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G006100.1CmaCh12G006100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G006100Melon (DHL92) v3.6.1cmamedB170
CmaCh12G006100Melon (DHL92) v3.6.1cmamedB198
CmaCh12G006100Melon (DHL92) v3.6.1cmamedB200
CmaCh12G006100Silver-seed gourdcarcmaB0002
CmaCh12G006100Silver-seed gourdcarcmaB0249
CmaCh12G006100Silver-seed gourdcarcmaB0449
CmaCh12G006100Silver-seed gourdcarcmaB0557
CmaCh12G006100Silver-seed gourdcarcmaB0631
CmaCh12G006100Silver-seed gourdcarcmaB1067
CmaCh12G006100Cucumber (Chinese Long) v3cmacucB0203
CmaCh12G006100Cucumber (Chinese Long) v3cmacucB0215
CmaCh12G006100Cucumber (Chinese Long) v3cmacucB0221
CmaCh12G006100Cucumber (Chinese Long) v3cmacucB0232
CmaCh12G006100Watermelon (97103) v2cmawmbB160
CmaCh12G006100Watermelon (97103) v2cmawmbB183
CmaCh12G006100Watermelon (97103) v2cmawmbB194
CmaCh12G006100Wax gourdcmawgoB0194
CmaCh12G006100Wax gourdcmawgoB0217
CmaCh12G006100Wax gourdcmawgoB0228
CmaCh12G006100Cucurbita maxima (Rimu)cmacmaB033
CmaCh12G006100Cucurbita maxima (Rimu)cmacmaB199
CmaCh12G006100Cucurbita maxima (Rimu)cmacmaB182
CmaCh12G006100Cucurbita maxima (Rimu)cmacmaB186
CmaCh12G006100Cucurbita maxima (Rimu)cmacmaB206
CmaCh12G006100Cucumber (Gy14) v1cgycmaB0224
CmaCh12G006100Cucumber (Gy14) v1cgycmaB0962
CmaCh12G006100Cucumber (Gy14) v1cgycmaB1088
CmaCh12G006100Cucurbita moschata (Rifu)cmacmoB164
CmaCh12G006100Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G006100Cucurbita moschata (Rifu)cmacmoB184
CmaCh12G006100Cucurbita moschata (Rifu)cmacmoB188
CmaCh12G006100Cucurbita moschata (Rifu)cmacmoB199
CmaCh12G006100Cucurbita moschata (Rifu)cmacmoB204
CmaCh12G006100Wild cucumber (PI 183967)cmacpiB175
CmaCh12G006100Wild cucumber (PI 183967)cmacpiB187
CmaCh12G006100Wild cucumber (PI 183967)cmacpiB197
CmaCh12G006100Cucumber (Chinese Long) v2cmacuB174
CmaCh12G006100Cucumber (Chinese Long) v2cmacuB185
CmaCh12G006100Cucumber (Chinese Long) v2cmacuB194
CmaCh12G006100Cucumber (Chinese Long) v2cmacuB201
CmaCh12G006100Melon (DHL92) v3.5.1cmameB184
CmaCh12G006100Melon (DHL92) v3.5.1cmameB156
CmaCh12G006100Melon (DHL92) v3.5.1cmameB182
CmaCh12G006100Watermelon (Charleston Gray)cmawcgB153
CmaCh12G006100Watermelon (Charleston Gray)cmawcgB160
CmaCh12G006100Watermelon (Charleston Gray)cmawcgB169
CmaCh12G006100Watermelon (97103) v1cmawmB148
CmaCh12G006100Watermelon (97103) v1cmawmB159
CmaCh12G006100Watermelon (97103) v1cmawmB166
CmaCh12G006100Cucurbita pepo (Zucchini)cmacpeB168
CmaCh12G006100Cucurbita pepo (Zucchini)cmacpeB179
CmaCh12G006100Cucurbita pepo (Zucchini)cmacpeB192
CmaCh12G006100Cucurbita pepo (Zucchini)cmacpeB199
CmaCh12G006100Cucurbita pepo (Zucchini)cmacpeB187
CmaCh12G006100Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G006100Bottle gourd (USVL1VR-Ls)cmalsiB174
CmaCh12G006100Bottle gourd (USVL1VR-Ls)cmalsiB184
CmaCh12G006100Cucumber (Gy14) v2cgybcmaB179
CmaCh12G006100Cucumber (Gy14) v2cgybcmaB479
CmaCh12G006100Cucumber (Gy14) v2cgybcmaB715
CmaCh12G006100Cucumber (Gy14) v2cgybcmaB906