CmaCh12G005750 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G005750
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 3009732 .. 3009968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGTGGTTGTGTTGGAGTTTTGGCTGTGATCATACTGTTGGCAATGGTGTTTGTTCATGTGGATTGCAGGGTGCTCACATCGATGGGAGATACTCGGGCTGTGATGGGAATTGGCCGGGAGCATGTCGGGAAAGGTAATGCGACTGGGTTCGTTAGATTTGGCGGTGGTTGGAAGGGAAGATGGGCATTCAAGCATGCTTCTGGACCGAGCAAAAGAGGACCAGGACATTAG

mRNA sequence

ATGAAGCGTGGTTGTGTTGGAGTTTTGGCTGTGATCATACTGTTGGCAATGGTGTTTGTTCATGTGGATTGCAGGGTGCTCACATCGATGGGAGATACTCGGGCTGTGATGGGAATTGGCCGGGAGCATGTCGGGAAAGGTAATGCGACTGGGTTCGTTAGATTTGGCGGTGGTTGGAAGGGAAGATGGGCATTCAAGCATGCTTCTGGACCGAGCAAAAGAGGACCAGGACATTAG

Coding sequence (CDS)

ATGAAGCGTGGTTGTGTTGGAGTTTTGGCTGTGATCATACTGTTGGCAATGGTGTTTGTTCATGTGGATTGCAGGGTGCTCACATCGATGGGAGATACTCGGGCTGTGATGGGAATTGGCCGGGAGCATGTCGGGAAAGGTAATGCGACTGGGTTCGTTAGATTTGGCGGTGGTTGGAAGGGAAGATGGGCATTCAAGCATGCTTCTGGACCGAGCAAAAGAGGACCAGGACATTAG

Protein sequence

MKRGCVGVLAVIILLAMVFVHVDCRVLTSMGDTRAVMGIGREHVGKGNATGFVRFGGGWKGRWAFKHASGPSKRGPGH
Homology
[Close]
BLAST of CmaCh12G005750 vs. TrEMBL
Match: A0A0A0LKP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G355010 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.1e-14
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 1  MKRGCVGVLAVIILLAMVFVHVDCRVLTSMGDTRAVMGIGR-EHVGKGNATGFVRFGGGW 60
          MK    GV AV+ LLAMVFVHVDCR L S  +T   +G GR E V KG+  G V F G  
Sbjct: 1  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 60

Query: 61 KGRWAFKHASGPSKRGPGH 79
          KG WAFKHASGPS RGPGH
Sbjct: 61 KGSWAFKHASGPSMRGPGH 79

[Close]
BLAST of CmaCh12G005750 vs. NCBI nr
Match: gi|700207356|gb|KGN62475.1| (hypothetical protein Csa_2G355010 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 1  MKRGCVGVLAVIILLAMVFVHVDCRVLTSMGDTRAVMGIGR-EHVGKGNATGFVRFGGGW 60
          MK    GV AV+ LLAMVFVHVDCR L S  +T   +G GR E V KG+  G V F G  
Sbjct: 1  MKARFFGVFAVMTLLAMVFVHVDCRHLRSRVETLPTVGTGRVEKVTKGDTNGLVSFSGHR 60

Query: 61 KGRWAFKHASGPSKRGPGH 79
          KG WAFKHASGPS RGPGH
Sbjct: 61 KGSWAFKHASGPSMRGPGH 79

The following BLAST results are available for this feature:
BLAST of CmaCh12G005750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G005750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKP9_CUCSA9.1e-1462.03Uncharacterized protein OS=Cucumis sativus GN=Csa_2G355010 PE=4 SV=1[more]
BLAST of CmaCh12G005750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G005750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207356|gb|KGN62475.1|1.3e-1362.03hypothetical protein Csa_2G355010 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013373Flagellin/pilin, N-terminal
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G005750.1CmaCh12G005750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013373Flagellin/pilin, N-terminalTIGRFAMsTIGR02537TIGR02537coord: 2..20
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G005750Cla022603Watermelon (97103) v1cmawmB148
CmaCh12G005750Csa2G355010Cucumber (Chinese Long) v2cmacuB174
CmaCh12G005750MELO3C010831Melon (DHL92) v3.5.1cmameB156
CmaCh12G005750ClCG08G016230Watermelon (Charleston Gray)cmawcgB169
CmaCh12G005750CSPI02G18760Wild cucumber (PI 183967)cmacpiB175
CmaCh12G005750CmoCh12G005170Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G005750CmoCh05G001620Cucurbita moschata (Rifu)cmacmoB199
CmaCh12G005750Lsi08G015020Bottle gourd (USVL1VR-Ls)cmalsiB184
CmaCh12G005750Cp4.1LG07g05000Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G005750MELO3C010831.2Melon (DHL92) v3.6.1cmamedB170
CmaCh12G005750CsaV3_2G026390Cucumber (Chinese Long) v3cmacucB0203
CmaCh12G005750Cla97C08G159890Watermelon (97103) v2cmawmbB194
CmaCh12G005750Bhi04G000366Wax gourdcmawgoB0194
CmaCh12G005750CsGy2G018660Cucumber (Gy14) v2cgybcmaB179
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G005750Cucumber (Chinese Long) v3cmacucB0215
CmaCh12G005750Cucumber (Chinese Long) v3cmacucB0221
CmaCh12G005750Watermelon (97103) v2cmawmbB160
CmaCh12G005750Watermelon (97103) v2cmawmbB183
CmaCh12G005750Wax gourdcmawgoB0217
CmaCh12G005750Wax gourdcmawgoB0228
CmaCh12G005750Cucurbita maxima (Rimu)cmacmaB033
CmaCh12G005750Cucurbita maxima (Rimu)cmacmaB199
CmaCh12G005750Cucurbita maxima (Rimu)cmacmaB182
CmaCh12G005750Cucurbita maxima (Rimu)cmacmaB186
CmaCh12G005750Cucurbita maxima (Rimu)cmacmaB206
CmaCh12G005750Cucumber (Gy14) v1cgycmaB0962
CmaCh12G005750Cucumber (Gy14) v1cgycmaB1088
CmaCh12G005750Cucurbita moschata (Rifu)cmacmoB164
CmaCh12G005750Cucurbita moschata (Rifu)cmacmoB184
CmaCh12G005750Cucurbita moschata (Rifu)cmacmoB204
CmaCh12G005750Wild cucumber (PI 183967)cmacpiB187
CmaCh12G005750Cucumber (Chinese Long) v2cmacuB185
CmaCh12G005750Cucumber (Chinese Long) v2cmacuB201
CmaCh12G005750Melon (DHL92) v3.5.1cmameB184
CmaCh12G005750Melon (DHL92) v3.5.1cmameB182
CmaCh12G005750Watermelon (Charleston Gray)cmawcgB160
CmaCh12G005750Watermelon (97103) v1cmawmB159
CmaCh12G005750Cucurbita pepo (Zucchini)cmacpeB168
CmaCh12G005750Cucurbita pepo (Zucchini)cmacpeB179
CmaCh12G005750Cucurbita pepo (Zucchini)cmacpeB192
CmaCh12G005750Cucurbita pepo (Zucchini)cmacpeB199
CmaCh12G005750Cucurbita pepo (Zucchini)cmacpeB187
CmaCh12G005750Bottle gourd (USVL1VR-Ls)cmalsiB165
CmaCh12G005750Bottle gourd (USVL1VR-Ls)cmalsiB174
CmaCh12G005750Cucumber (Gy14) v2cgybcmaB479
CmaCh12G005750Cucumber (Gy14) v2cgybcmaB715
CmaCh12G005750Cucumber (Gy14) v2cgybcmaB906
CmaCh12G005750Melon (DHL92) v3.6.1cmamedB198
CmaCh12G005750Melon (DHL92) v3.6.1cmamedB200
CmaCh12G005750Silver-seed gourdcarcmaB0249
CmaCh12G005750Silver-seed gourdcarcmaB0557
CmaCh12G005750Silver-seed gourdcarcmaB0638
CmaCh12G005750Silver-seed gourdcarcmaB1067