CmaCh12G002390 (gene) Cucurbita maxima (Rimu)

NameCmaCh12G002390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 1193126 .. 1197191 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAGCTCACTGCCCCATAATATAGTTCATTCGAAGGATCAAATCTCACCAAAATTTCTCTCACGAAAATGTGCAGAATTTTGCGGCATCAGCAAATGGCGCCAACAGCAATAGGGATGCGGCTGACACCCCTAACCATATGATCATAGTGATTATTGAAATATAATTTGGGGTTATTTTATTTATGCCTTTTTCTTTTTGTTCTATTATTTTTTGAATTATAAAATTTAGATTTATGATTATTTAATTTCTCAATTTAAAATATATTTAATCTTCTTTTTTATAATTTATAGATCAATGATTATTTAATTTCTCAATTGAATATTATTATTTAATTAAATTTTTTAACATTTATAGTTTTTATGTTTTATTGATTAAATTTCTATTTTTGAAATTGATATTATAATTTTTCCTCTTTGTATTTAATTAAAGTTTTTATTATTTTTAACCATTCAATTGTTTATATTAATTTCAAAATGTTTATAATTATAAAAATATTAAAAAAATAATATTTTAATATTTTAATATTTTTTTATCAACACATTAATATTTGATTTACCTCAATGTTTATTGGACTGACACGACACGACCCATCAAAACGTGGTCCAAATAGGTCGACTCGTAGGTAGCTTGATCTTCAAAGTAATTATTCATACTCAAATGGGTCAACTGAATTTAAAATTTGGGTCGAACTTGGATTAAGCTCGGGGCACTCGAACCTTTTTTTTGATATGTAATTAATATATAGAATCTAAAATTCAATAATATCTATTAAATATGAATTAAATTTGTTGGGAATAAATTATTACAATTTTTATTATTTTTTTAATTCGAACATTTACTATTTATTTTCCGTACATTATTCTTGATCAGAATCACCGTAAAAGGAAAGCAGAGTGGCGGATTCCGATTGCTCTGTCAGAACTTCAACTATGGCCTCATGGAGTTCGTCTATTTGCTAAGAGGTATGCGTTTCTGAATTTCCGTTCAATGTTTACCAAACTTCATATCAGATTGGCTTGTATGTTTTGGTTTCATGCCGGTAAAATCTTGTGGATTTCTCAGGAGGAATTCGAAGAGAATGCGTTTGATAGTCAATCTCGACTTTCAATCGACACTGTTAGAGGCGGTTTCCATCCTGTCGCAGTGCTATGCCAGCTTAAGCTGCTGCGCCAAGTAATTTCCCCTTCTACCAGACTGCTTATTGACTTAGAACTTGATTTGTTACTTTAGATTTGAAGTTGCGTGTTTGCTTAATTTACAGGATTTAATGTTGGTAATGATATGAATTCTTACTTTAACTAAAATTTATTATGGGAGTTCGGCAATGTTGGTGATGTTATCTACATGGAAATCGAAAAATGTTGGCGGCATTTTATGTTAAAAAGCTTTAGGAAACATCAGTTGGTTGATGTCGATTTGTTTGGACCTCAAATAGGAACGGCCAGCCTCTTGGAGGCCAAGACTAACTGTTGAAAAAAAGCAAAAAAGTAGAGAAGATTTAGAGCCTGAAATTACTGTGTCTGTATAAGTTTGGTGCCATCCATCTTCTATTCAGTAAATATTTTGTTCATCACCTAATTACTATGGTATTTTTTAAGATTGATTTATATAATTTATGAATCAAATGAAAAAGAACTATCTTAACGGCATTCTTTTAATAGTCAGCTGAAGTGAAGACAACCACGTCCAAAAGTGTTGCTCCCCCTCCCCTGTCCTGCCACTTATGACATTAAGAGCTCCAAGGCTTTCAAATAGTTTTCATTGCCCAAGTTATGCAGTTGGTCGAGCAGCATACTGATAGAAATGCAAATGATCTAATTTTAGGTTAGACTTGACTATTTGTTTCTAATTATTTCCAAAAGGCTCTGAGCAAACAAGTTTAATAACATAAATCTTCCACTGTTCCTACGATATGTATATGCATGTTTAATTAGTCTCGTGAGTAAATACAGCTCTGATGATGCAGCCATCAAAAGCTGGTCTTAAGGAGTTATAGGTTGATGGTACAAAATCATTGATAAAATGTTGACGTCATGGGGTATTCTAAGGAAATCTGAAAAATTAAAAAAATCATATAAATTTGTTGAAGCTAGTTGGATCAATTATAAAATTTTAACATCCGTTTTGAGTAAAGAGTATCTTTTGAAGTACTCTACAAAGACATTGAACTACATGGACTCTTTTTCCTTCCATGTGCTGCTTATGTAGAAAGAAGATTCTTTTGATCACCTGCTGTTACACTGTCCTTTCGTGGCTAAGAGTCGATCTTTTATTTTGAAGGAATTTGGGTTTTCAATCTTTCTCCCTAAGAAGGTTGAAGATTGATTACTGGAAACTCTGATGGAGATGAGATTTAGTGGAAAGGCAAGAATTTAATGGTGCTATACAGTGGAAGCTACCCTACGGGTGACTTGGAAAGAGAGGAACCTTAGAATGTCTGAGGATAAGTTAAGTTCAGAGGATTCTTTTATTTATAGTATATAACACAGCCTCGTGGTGGAACTCAGGTCACAAAGAGTTTTAGTATAATTATACCCTTATCATGACTATTAGAAATTGGAAGGCCTTTTTGGGTTAGTCTTTTGTTGGGAGGAGTTCCCTCTACCCCTTGCCCTTTGGCTATCTTCTCTTTCTTTTGTGTATAATATCCTTATCTTAGTTTCTTATCCCCAAAAAAAAAAAAAAAAAGTCTTGATTGTCACCTTCTGATCTATGCATATCAGCTTATGTGGTGAGTTTTTGCCTCTAAATGTTGTAGAATCAAATTGCACTTATGAAATCAGTCGTGTTGCATATAAGCCAATCCAAACACCTAGCCATTATAATAATGCTATACATACATAAAACACTGTAATCACGATGCTGATAATAGTTCTAACATGATTATCTCCCTCTTATTATTTATCGATTTGCATCATGCAACTTGTGCTTTGTAGCAAGTGGTGACATTTCTGTTACCATTGCCGCTATTTTGGTTTCTTACAAAATAAATTATGTTTGATTCAGCTTACGTAGTTGATAAAGTTCGAAGGTGATCCAGAAGTTGCAAAAAGTTGTGGATGCTACCAATAATTTCCATGATGCTGCTAGATTCTAGTGGGATGAGCAGAATAAATTCTGAAGGAATAATAAGGAACGATCAATATAATAGTAAAACTAAAGTTTACTTTTGGATGTTTTATCGTTCCCCACAAGTTTTGGACTCTACCAGTGAGAATATAGTTGATTGAGAAAGAAAACATTCCTTAGAGAGTCCTCACAGGTTATTTTATAATGCCTCCATCTCTCCTTCAATGGTACAGGATTTATGCTTTCTGTTCTAAGCATGGGATTTTATATTCCTTACCTAATGATTTTGGTTTATTATATTTTTTCAGATCAGAGCTTATCTCTTTTTCAGCATTTACACGCGAACAAAATTTTCTTTGGCACATAATTGGATGTTAGGCGCCATTGAAAATAATTTTTAATTAATATGCTTAGGGTGGGCTGTGGTATGTGAGCCCATATTACGTGACATGAGGGGCACAGCTGCAAAAGCTTTATGGTTAAAACCATTGGCCTATGAAATATTTTTCTTCCTTCCATCATTTTGCAGCTACAGCACAAACGTGAACAATATATGTGATTGGGTAGGGGATATTTGTGAGGTGGGTACATGTATTTTTCGTGGGGTGATGGAAAACTAAAAAGGTGGCACCCTTTTTGCTTAGATATTATTGAGGTCCCAGATAAAATCTTCTCCCTATTTTTCTTTTTATTGTAGTCCTGTCACAACATGCATTTATTTATAAACAAATGCTATAATACGTGTTGGGTTTATCATATCCTTGCTGGGATCTTATCAATTTTGGGAGATAGATAATGCAGAATATCGATCCCTTCTGTTAAGAAAGAAGGGGGGAAATGCATAAATTCATATTCTCAATCTCATTCGGTGCACCCACTTCTTTTGCCAAGCAGGGTGTGTGACCACACATTTTCAAAATTCACTGCAGACACCAGAAGATGTCAATCCCGCAGCAACAATCGACAGCGAGAGGCATGTAGGGGACCATGA

mRNA sequence

ATGCTCAGCTCACTGCCCCATAATATAGTTCATTCGAAGGATCAAATCTCACCAAAATTTCTCTCACGAAAATAGTGGCGGATTCCGATTGCTCTGTCAGAACTTCAACTATGGCCTCATGGAGTTCGTCTATTTGCTAAGAGGAGGAATTCGAAGAGAATGCGTTTGATAGTCAATCTCGACTTTCAATCGACACTGTTAGAGGCGGTTTCCATCCTGTCGCAGTGCTATGCCAGCTTAAGCTGCTGCGCCAAGGTGTGTGACCACACATTTTCAAAATTCACTGCAGACACCAGAAGATGTCAATCCCGCAGCAACAATCGACAGCGAGAGGCATGTAGGGGACCATGA

Coding sequence (CDS)

ATGCGTTTGATAGTCAATCTCGACTTTCAATCGACACTGTTAGAGGCGGTTTCCATCCTGTCGCAGTGCTATGCCAGCTTAAGCTGCTGCGCCAAGGTGTGTGACCACACATTTTCAAAATTCACTGCAGACACCAGAAGATGTCAATCCCGCAGCAACAATCGACAGCGAGAGGCATGTAGGGGACCATGA

Protein sequence

MRLIVNLDFQSTLLEAVSILSQCYASLSCCAKVCDHTFSKFTADTRRCQSRSNNRQREACRGP
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G002390.1CmaCh12G002390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score:

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G002390Cucumber (Chinese Long) v3cmacucB0192
CmaCh12G002390Cucumber (Chinese Long) v3cmacucB0210
CmaCh12G002390Watermelon (97103) v2cmawmbB166
CmaCh12G002390Watermelon (97103) v2cmawmbB194
CmaCh12G002390Wax gourdcmawgoB0210
CmaCh12G002390Wax gourdcmawgoB0223
CmaCh12G002390Cucurbita maxima (Rimu)cmacmaB035
CmaCh12G002390Cucurbita maxima (Rimu)cmacmaB194
CmaCh12G002390Cucumber (Gy14) v1cgycmaB0447
CmaCh12G002390Cucumber (Gy14) v1cgycmaB0856
CmaCh12G002390Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G002390Cucurbita moschata (Rifu)cmacmoB194
CmaCh12G002390Wild cucumber (PI 183967)cmacpiB165
CmaCh12G002390Wild cucumber (PI 183967)cmacpiB182
CmaCh12G002390Cucumber (Chinese Long) v2cmacuB164
CmaCh12G002390Cucumber (Chinese Long) v2cmacuB180
CmaCh12G002390Melon (DHL92) v3.5.1cmameB162
CmaCh12G002390Melon (DHL92) v3.5.1cmameB170
CmaCh12G002390Watermelon (Charleston Gray)cmawcgB143
CmaCh12G002390Watermelon (Charleston Gray)cmawcgB169
CmaCh12G002390Watermelon (97103) v1cmawmB148
CmaCh12G002390Watermelon (97103) v1cmawmB174
CmaCh12G002390Cucurbita pepo (Zucchini)cmacpeB174
CmaCh12G002390Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G002390Bottle gourd (USVL1VR-Ls)cmalsiB169
CmaCh12G002390Bottle gourd (USVL1VR-Ls)cmalsiB184
CmaCh12G002390Cucumber (Gy14) v2cgybcmaB168
CmaCh12G002390Cucumber (Gy14) v2cgybcmaB301
CmaCh12G002390Melon (DHL92) v3.6.1cmamedB177
CmaCh12G002390Melon (DHL92) v3.6.1cmamedB185
CmaCh12G002390Silver-seed gourdcarcmaB0074
CmaCh12G002390Silver-seed gourdcarcmaB0892