CmaCh12G000020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G000020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Spermidine synthase
Location	Cma_Chr12 : 6511 .. 11493 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGACACGCTTTACGAGAGTTCGGTGTCAGCAAAAAATGAAAGGGGGAAAGTGCTCCAATATAAAAGCTTAAAAGATGCGTCCTTTTTTAGCAGATTCGCTGCTTGTGAGCCTCTCAATCTTTTTTTCATAACAAAGCAGCCGACCCCACCCTCTTAGTTCCGGGGCGTCTTGCTCCTGCTCGAAGGGCTAACGACCAAGCGGCTCCCTTTAGTCTTATCTTTCCCTTTTGCCCACACAGGATTACCAACGCATGGCTTCCGATAATTCTTCTGCCTCAGCCTCAGATTTATCTGTCAAGAGGTCGAGGGACGAAGACCAAAATGGAACTCCACCCTCTTCACAACCTGATTCTATTTCTTCCGTCATCCCCGGATGGTTCTCCGAGATCAGCCCAATGTGGCCTGGTGGGTTCGCCACTACATCTCGCTCCTCTTACTTAATATGTGTTTATTCCTAAGTAATCGTTCCTTAGTCATCGACAGTTTTGGAACTCATTCACTTGTGCCTTCTCTGCTTTCGTAGTGTTTTGGCTTATCTGATTTTAACTTTCTCTGGTGAGTTGGTTGAAATATCATCACTCCAAGCACAATCAATGATTTGGCAAGCCCTTCTATATTTATTTTGGTAGAGATTTTAGAAAAATTACCTCAAAATTTTAAGAGAATGAGATTTAAATATTTTAGAAAAAAAGATTCAGATTTGTTGATCACATTTGTTAGGTCGGATTGTTTAGGCTCTAGTATAAATATCCCTCCACCCTAAGTAGATTATTCATCCAAAAACAACAAAGAGTATTCTACATAGTGTCTTTGTATCCTCTTCTCGATTGGTCTTAATAAAGAGTGCGAGTGTTTCCCACAGAGTTGTTCAACAATTGGTATCAGAGCAAAGTTAGTGTATGTTATTTGATCTCTTGGAATTTTTAGTATGCTCTGTGGTTGCAGCTCTATCTGATCTTCCACATCAAAAACGATTTCTTGAGATTAGTAGTGAGTGAGTTTTTTTTTGTGTCGTGAGTAGTCTGTGACTCTGCAAGTCTTATGTCGAAAGTGCTTGTTTGGTATGGCCAACACGATGGTTGATTTTCAAATCGTTGGAGGAATCAAGAAACTCAACAACAACAACTACAACACGTGGGCAACATGCATGATGTTCTATTTACAAGGACAGGATCTTTGGGAGATCGTTGGCAGGTGTGAAACTACGCCGCCAGAGGAGGATTCTAACGGCGCCTTGCGCAAATGGGGAATCAAAGCAGGCAAAGCAATGTTTGCCTTGAAGACCACAATCGAAGAAGAGATGTTAGAACATATTTGGGATGACAAGACACCGAAAGAAGCATGAGACACGTTCGTAATGTTGTTCTCAAAAAAGAACGATACGAGGCTACAACTTCTGGAGAATGAGTTGTTGTCAATTACACAACGTAACATGACGATTGCTCAGTACTTCCACAAGGTCAAATCGATCGGTTGGGAGATTACTGAACTAGACCCGAAGTCTACCATTGTAGAATCTCGAATGAAGAGGATTATAATCCACGGATTGCGACCGGAATATAGAATGTTTATTACTGCTATACAAGGATGGCCCACTCAATCATCACTTGTAGAGTTCGAAAATTTGTTAGCCAGCCAAGAAGTCATGGCTAAACAAATGGGAGGCATCACATTGAAGGGTGAAGAAGAAGCACTCTACACAAGTGAAAGTCGAAGCAATAATAGGCCGTCTACCAAATGTGGATACAATGGTGACAAAAGAAGAAGTTACCAAGGAACTTCACAACCCGAGAGAGCTCAGAAGAACGACAACAAGAGTTTCCAAGGAAAAAGATTTGAAGGTATTTGCTATAATTGCGGGAAATAGGGTCACATGTCTAGAGATTGTTGGTCCAGGAAAAAGTCGGTTGAAAGCAATGTGGCAATATCCAAAAAGAAGATAGAGGATGAATGGGATGCAGAGGTACTATGTCCAATAGTAGAAGACGAGCTAGCACTCATGGCAATGATGAAAGAGCATATCGATTACGAGGATGACTGGATCATTGATTCAAGATGCTTAAACCACATGATTGACGATCAAAGCGATGTAATGGAAGAGGGGTGGCCCTCAGAGAAGAAAGTATTACCAGGCCTTGAGCAAGCTGAAGAAATTCTTTTATAGAACACAGAGGAGCAAACAGAAGAAATTCTTTTATAGAACACAGAGGAGCAAACAGAAGAAATTCTTTTACAAAACACATAGAAGCAAACGGAAGAAATTCTTTTACACAACACAGAGGAGCAAACGGATGAGATTCTTCCACAAAAGACGGGGGAGCAAATTGTACACATTTGCTTAAGTGCTGATGTGCCTGAAGATTCAAGTGACACTAGTGTTGGTGAGCAAGAAGTGACTCAACTAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGAAATTCAGAAATAATCCTAAAGGCAAATCCAGAGTATGCCAACGCAGTAGAAGACGAAATTAATGAGCTGGAGACATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGTAGAAACTATAGCCCTGGAACAAAATTAAACTTGGGAATTAGTGCCAAGACCAAGAGATATTAAACTCATCTCTTACTAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCATGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTTAAGAATATGGACTAGACTATGATGAAACATTTAGTCCAGTGGCAAAGATCATTATCGTAGAAGTTCCTCCAATACTTACGGTAAATAAAGATTGAAAATTATGACAGATGGATATGAATAATGCTTTCTTGCATGGAGAGTTAAACAGAGAGTTCTACATGAACCAACCAAAGAGATTCGAAAATGAAGTTGGAGTCATTGATCAATATATGCAAAATCCGAAGAAGCCTCATTTGGATGTGGCTCGATGGACCTTGAGATATGTCAAAGGTACAATCAATTACAATCATTTATACAAAAGAAGCGAAGACTGGAAGCTAGCTAGATATAGTGATGTCGACTATGCAGGAGACCACGATACCTGAAGATCAATCACTGAGTATGCGTTCAAGCTCGGTTCGAGAACAATTTTTTGGTGTAACAAAAGACAACCAACAATATCATTGTCAACTAGAGAAGCAGAGTACAGAGCAGCAGTTGGAGCAGCTTAGGAAAATACATAGTTAAAACATTTGATGGAAGATTGGCACCAGAAAATTGAGTATCCAATACCACTTCATTCCAACAATCAATTTGTGATTCGTCTAGTAGAAAATTCGGTTTTTCATGGTAGAACAAAGCATGTAGAGGTACGCTACCATTTCATTAAAGAGAAAGTTTTGAAGGAACAAATCGAGATGCAGCAGATCAAGACAGATGACCAAGTGGCAGACTTATTTACAAAAGGGCTGAATATTGGCAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAGCGAATGAGGAAGATGCTATTTAAATGCACGAGCTTATATTTAATCGGTATTCTAAGCCCAACTTTATGTTTTCCGCTGGTTTCTGTCACTTGTTCTCTGTTTAAAATTTATGTTCTTCTATGGCGTCGTTTCATTTGGTTGCTAACAATTGCTATTGTAGGCTCAGCTTAAATTATCGATATGTTTAGTCTTAAATAATAGGTTTATTTCCCCTTTTCTCTTTGCGAAGGTCCATTTTGCTTCGCACATTCTCTTCGCAAATGGTATCATTCTTGGTTGTTGGCAAGCTTGGATGGTGGGTTATGCCACTGTATTTGTATTGACTCCGTTTGATGTGAGTTTTCTTTTTGTGTTGACTGCTGTATATCCTTTCATTTACTCTATTAGAGTATCTTTTTTAATAAGAAAAAAAATGATAAATTTTTGTTACGAAATAAGCAGGATAAATATGCTGTGAACTTGTCCATGACGGTATCACTTTTTTTCTTGTCCGTACTTATAACTTGAAAATATTGTGCAGGAGAGGCACATTCATTGAAAGTAGAGAAGATTTTATTTCGAGGGAATTCTGACTATCAGGATGTTATGGTCTTTCAGGTGTGAATTACTTGAGCATTGTAATATTTCTTCTTTGGCTTGTTATTGATTCTATTCCAACTGTTTGCTGCGCAGCATTAGAATGGTGGTTTGGCTGAAATTGAAACCCCAGATTCAATCCATGGTCGGGAGGAGTTGAGAACCTTTCATGTGATATATAACTGACATATATTAGTATTGGTAGTTGGGAGTTTTTTCTCTTCTTACATCTAATTCCTTGAAATTTTGTGGCCCAGTGGAGTGATTGGTTTTATGCTGTGCTCTACCGAGGGACCTGCTGTTGATTTCAAACACCCGATAAATTCAATCGATGTTAATGATATTAACAACAAGTCTAGAGGGCCCTTGAGATTTTAGAATTCTGAGGTTTGTACCATAATCTTGTTGGGCGTTTTTGTTTATGAAAAAAGATTTTACAATCCTCATTTGGTTAGAATCATAAATTTGAAATCCAGATTCACACGGCAGCTTTCTGTTTGCCATCTTTCGCCAAGAAGGTTATTGATTCAAGAGTAAAATGAGGATTGAATCGGGGGAGTAGGTTGTGGCTCTTCATTTTGAACCAAATGCCTTGTCTACCCCGACACTGCAGATCAACCAAGGCATTTTCCTTCTTTAACTTTCCCTTATTCAGCAATTCAGTTGTTCTATTATTCTGCTGCTGCTGCTTAATACAATACGACTTTTTCGCCCATAGCATAGCCCTTTGTTCATAAATTGAATTCAGAACGTGGATGTTCAAATGGGAAGTCCTTTGTTGATAAATTGAATTCAGAACATGGATGATTAAATAGGAAGTTCTTTGTTGATAAATTAAATTCAGAACATGGATGTTTACCTTATTTTTTTTGTAAATAGTCATTCACACTTTTTCTTCT

mRNA sequence

AACTGACACGCTTTACGAGAGTTCGGTGTCAGCAAAAAATGAAAGGGGGAAAGTGCTCCAATATAAAAGCTTAAAAGATGCGTCCTTTTTTAGCAGATTCGCTGCTTGTGAGCCTCTCAATCTTTTTTTCATAACAAAGCAGCCGACCCCACCCTCTTAGTTCCGGGGCGTCTTGCTCCTGCTCGAAGGGCTAACGACCAAGCGGCTCCCTTTAGTCTTATCTTTCCCTTTTGCCCACACAGGATTACCAACGCATGGCTTCCGATAATTCTTCTGCCTCAGCCTCAGATTTATCTGTCAAGAGGTCGAGGGACGAAGACCAAAATGGAACTCCACCCTCTTCACAACCTGATTCTATTTCTTCCGTCATCCCCGGATGGTTCTCCGAGATCAGCCCAATGTGGCCTGGAGAGGCACATTCATTGAAAGTAGAGAAGATTTTATTTCGAGGGAATTCTGACTATCAGGATGTTATGGTCTTTCAGCATTAGAATGGTGGTTTGGCTGAAATTGAAACCCCAGATTCAATCCATGGTCGGGAGGAGTTGAGAACCTTTCATTGGAGTGATTGGTTTTATGCTGTGCTCTACCGAGGGACCTGCTGTTGATTTCAAACACCCGATAAATTCAATCGATGTTAATGATATTAACAACAAGTCTAGAGGGCCCTTGAGATTTTAGAATTCTGAGATTCACACGGCAGCTTTCTGTTTGCCATCTTTCGCCAAGAAGGTTATTGATTCAAGAGTAAAATGAGGATTGAATCGGGGGAGTAGGTTGTGGCTCTTCATTTTGAACCAAATGCCTTGTCTACCCCGACACTGCAGATCAACCAAGGCATTTTCCTTCTTTAACTTTCCCTTATTCAGCAATTCAGTTGTTCTATTATTCTGCTGCTGCTGCTTAATACAATACGACTTTTTCGCCCATAGCATAGCCCTTTGTTCATAAATTGAATTCAGAACGTGGATGTTCAAATGGGAAGTCCTTTGTTGATAAATTGAATTCAGAACATGGATGATTAAATAGGAAGTTCTTTGTTGATAAATTAAATTCAGAACATGGATGTTTACCTTATTTTTTTTGTAAATAGTCATTCACACTTTTTCTTCT

Coding sequence (CDS)

ATGGCTTCCGATAATTCTTCTGCCTCAGCCTCAGATTTATCTGTCAAGAGGTCGAGGGACGAAGACCAAAATGGAACTCCACCCTCTTCACAACCTGATTCTATTTCTTCCGTCATCCCCGGATGGTTCTCCGAGATCAGCCCAATGTGGCCTGGAGAGGCACATTCATTGAAAGTAGAGAAGATTTTATTTCGAGGGAATTCTGACTATCAGGATGTTATGGTCTTTCAGCATTAG

Protein sequence

MASDNSSASASDLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQH

Homology

[Close]

BLAST of CmaCh12G000020 vs. Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-20
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPS----SQPDSISSVIPGWFSEISPMWPGEAHS 60
          MA+  ++  ++D  +KR R+++ NG   +     QP+ +SSVIPGWFSEISPMWPGEAHS
Sbjct: 1  MAAPENTLHSTDSPLKRQREDEVNGVSDTLSKEPQPNGLSSVIPGWFSEISPMWPGEAHS 60

Query: 61 LKVEKILFRGNSDYQDVMVFQ 78
          LKVEKILF+G SDYQDVMVFQ
Sbjct: 61 LKVEKILFQGKSDYQDVMVFQ 81

[Close]

BLAST of CmaCh12G000020 vs. Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 3  SDNSSASASDLSVKRSRD----------EDQNGTPPSSQPDSISSVIPGWFSEISPMWPG 62
          S    AS +DL VKR R+          E +NG     +P  +SS+IPGWFSEISPMWPG
Sbjct: 2  SSTQEASVTDLPVKRPREAEEDNNGGAMETENGGGEIKEPSCMSSIIPGWFSEISPMWPG 61

Query: 63 EAHSLKVEKILFRGNSDYQDVMVFQ 78
          EAHSLKVEKILF+G SDYQDV+VFQ
Sbjct: 62 EAHSLKVEKILFQGKSDYQDVIVFQ 86

[Close]

BLAST of CmaCh12G000020 vs. Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-18
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 32 PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ 78
          PD +SSVIPGWFSEISPMWPGEAHSLKVEKILF+G SDYQ+VMVFQ
Sbjct: 17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQ 62

[Close]

BLAST of CmaCh12G000020 vs. Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-18
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 4  DNSSASASDLSVKRSRDEDQNGTPPS---------SQPDSISSVIPGWFSEISPMWPGEA 63
          D    SA+DL  KR R+ED NG   +          +P   S+VIPGWFSE+SPMWPGEA
Sbjct: 2  DAKETSATDL--KRPREEDDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEA 61

Query: 64 HSLKVEKILFRGNSDYQDVMVFQ 78
          HSLKVEK+LF+G SDYQDV+VFQ
Sbjct: 62 HSLKVEKVLFQGKSDYQDVIVFQ 82

[Close]

BLAST of CmaCh12G000020 vs. Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-17
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 18 SRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ 77
          + + + NG     +   ISSV+PGWFSEISP+WPGEAHSLKVEKILF+G SDYQDVMVFQ
Sbjct: 5  NHNNNNNGCTNDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQ 64

[Close]

BLAST of CmaCh12G000020 vs. TrEMBL
Match: A0A103YAQ3_CYNCS (Spermidine/spermine synthase family OS=Cynara cardunculus var. scolymus GN=Ccrd_016037 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-19
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVE 60
          MA   + A+ SDL +KR R+ ++NG         ISSVIPGWFSEISPMWPGEAHSLKVE
Sbjct: 1  MAEQTTVAAVSDLPMKRPREGEENGAAAFETSGYISSVIPGWFSEISPMWPGEAHSLKVE 60

Query: 61 KILFRGNSDYQDVMVFQ 78
          KILF+G SDYQDVMVFQ
Sbjct: 61 KILFQGKSDYQDVMVFQ 77

[Close]

BLAST of CmaCh12G000020 vs. TrEMBL
Match: M5XC54_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008283mg PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-19
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 8  ASASDLSVKRSRDEDQNG----------TPPSSQPDSISSVIPGWFSEISPMWPGEAHSL 67
          A ++D  +KRSR+E++NG          T    + D +S+VIPGWFSEISPMWPGEAHSL
Sbjct: 7  AGSADFPLKRSREEEENGVYAASTVSVETDTGKEADGVSAVIPGWFSEISPMWPGEAHSL 66

Query: 68 KVEKILFRGNSDYQDVMVFQ 78
          K+EKILF+G SDYQDVMVFQ
Sbjct: 67 KIEKILFQGKSDYQDVMVFQ 86

[Close]

BLAST of CmaCh12G000020 vs. TrEMBL
Match: A0A067JUP7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17721 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.2e-19
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPSS--------QPDSISSVIPGWFSEISPMWPG 60
          MA D    S +DL VKR+R+E++NG   ++          D ISSVIPGWFSEISP+WPG
Sbjct: 1  MAQDGGVVSNNDLPVKRAREEEENGVSDTTVAMETENTNNDYISSVIPGWFSEISPLWPG 60

Query: 61 EAHSLKVEKILFRGNSDYQDVMVFQ 78
          EAHSLKVEKILF+G SDYQ+VMVFQ
Sbjct: 61 EAHSLKVEKILFQGKSDYQNVMVFQ 85

[Close]

BLAST of CmaCh12G000020 vs. TrEMBL
Match: U3PXP6_CAMSI (Spermidine synthase OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.4e-19
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVE 60
          M++   S  ASD  VK+ ++ ++NG  P   P+ ISSVIPGWFSEISPMWPGEAHSLKVE
Sbjct: 1  MSTAEESGVASDFPVKKLKEMNENGVEPP--PECISSVIPGWFSEISPMWPGEAHSLKVE 60

Query: 61 KILFRGNSDYQDVMVFQ 78
          KILF+G SDYQ+VMVFQ
Sbjct: 61 KILFQGKSDYQNVMVFQ 75

[Close]

BLAST of CmaCh12G000020 vs. TrEMBL
Match: Q8GTQ6_MALDO (Spermidine synthase OS=Malus domestica GN=MdSPDS1 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 3  SDNSSASASDLSVKRSRDEDQNGTPPSS-----------QPDSISSVIPGWFSEISPMWP 62
          +D S A ++D  VKR R+E++NG+  ++           +PDS+S+VIPGWFSEIS MWP
Sbjct: 2  ADESVAGSADFPVKRPREEEENGSAAAASAVSMEPDGGKEPDSVSAVIPGWFSEISSMWP 61

Query: 63 GEAHSLKVEKILFRGNSDYQDVMVFQ 78
          GEAHSLK+EKILF+G SDYQ+VMVFQ
Sbjct: 62 GEAHSLKIEKILFQGKSDYQNVMVFQ 87

[Close]

BLAST of CmaCh12G000020 vs. TAIR10
Match: AT1G70310.1 (AT1G70310.1 spermidine synthase 2)

HSP 1 Score: 96.7 bits (239), Expect = 6.9e-21
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 3  SDNSSASASDLSVKRSRD----------EDQNGTPPSSQPDSISSVIPGWFSEISPMWPG 62
          S    AS +DL VKR R+          E +NG     +P  +SS+IPGWFSEISPMWPG
Sbjct: 2  SSTQEASVTDLPVKRPREAEEDNNGGAMETENGGGEIKEPSCMSSIIPGWFSEISPMWPG 61

Query: 63 EAHSLKVEKILFRGNSDYQDVMVFQ 78
          EAHSLKVEKILF+G SDYQDV+VFQ
Sbjct: 62 EAHSLKVEKILFQGKSDYQDVIVFQ 86

[Close]

BLAST of CmaCh12G000020 vs. TAIR10
Match: AT1G23820.1 (AT1G23820.1 spermidine synthase 1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-19
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 4   DNSSASASDLSVKRSRDEDQNGTPPS---------SQPDSISSVIPGWFSEISPMWPGEA 63
           D    SA+DL  KR R+ED NG   +          +P   S+VIPGWFSE+SPMWPGEA
Sbjct: 46  DAKETSATDL--KRPREEDDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEA 105

Query: 64  HSLKVEKILFRGNSDYQDVMVFQ 78
           HSLKVEK+LF+G SDYQDV+VFQ
Sbjct: 106 HSLKVEKVLFQGKSDYQDVIVFQ 126

[Close]

BLAST of CmaCh12G000020 vs. TAIR10
Match: AT5G53120.6 (AT5G53120.6 spermidine synthase 3)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-10
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1


Query: 28  PSSQPDSISSVIPGWFSEI---------------SPMWPGEAHSLKVEKILFRGNSDYQD 78
           P       S+V+ GWFSE                +PMWPGEAHSLKVEK+LF+  SD+Q+
Sbjct: 41  PEDDAKCHSTVVSGWFSEPHPRSGKKGGKAVYFNNPMWPGEAHSLKVEKVLFKDKSDFQE 100

[Close]

BLAST of CmaCh12G000020 vs. NCBI nr
Match: gi|976920912|gb|KVI05620.1| (Spermidine/spermine synthase family [Cynara cardunculus var. scolymus])

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVE 60
          MA   + A+ SDL +KR R+ ++NG         ISSVIPGWFSEISPMWPGEAHSLKVE
Sbjct: 1  MAEQTTVAAVSDLPMKRPREGEENGAAAFETSGYISSVIPGWFSEISPMWPGEAHSLKVE 60

Query: 61 KILFRGNSDYQDVMVFQ 78
          KILF+G SDYQDVMVFQ
Sbjct: 61 KILFQGKSDYQDVMVFQ 77

[Close]

BLAST of CmaCh12G000020 vs. NCBI nr
Match: gi|596142018|ref|XP_007222503.1| (hypothetical protein PRUPE_ppa008283mg [Prunus persica])

HSP 1 Score: 101.3 bits (251), Expect = 7.9e-19
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 8  ASASDLSVKRSRDEDQNG----------TPPSSQPDSISSVIPGWFSEISPMWPGEAHSL 67
          A ++D  +KRSR+E++NG          T    + D +S+VIPGWFSEISPMWPGEAHSL
Sbjct: 7  AGSADFPLKRSREEEENGVYAASTVSVETDTGKEADGVSAVIPGWFSEISPMWPGEAHSL 66

Query: 68 KVEKILFRGNSDYQDVMVFQ 78
          K+EKILF+G SDYQDVMVFQ
Sbjct: 67 KIEKILFQGKSDYQDVMVFQ 86

[Close]

BLAST of CmaCh12G000020 vs. NCBI nr
Match: gi|802718749|ref|XP_012085346.1| (PREDICTED: spermidine synthase 1 [Jatropha curcas])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPSS--------QPDSISSVIPGWFSEISPMWPG 60
          MA D    S +DL VKR+R+E++NG   ++          D ISSVIPGWFSEISP+WPG
Sbjct: 1  MAQDGGVVSNNDLPVKRAREEEENGVSDTTVAMETENTNNDYISSVIPGWFSEISPLWPG 60

Query: 61 EAHSLKVEKILFRGNSDYQDVMVFQ 78
          EAHSLKVEKILF+G SDYQ+VMVFQ
Sbjct: 61 EAHSLKVEKILFQGKSDYQNVMVFQ 85

[Close]

BLAST of CmaCh12G000020 vs. NCBI nr
Match: gi|546234995|gb|AGW82430.1| (spermidine synthase [Camellia sinensis])

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 1  MASDNSSASASDLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVE 60
          M++   S  ASD  VK+ ++ ++NG  P   P+ ISSVIPGWFSEISPMWPGEAHSLKVE
Sbjct: 1  MSTAEESGVASDFPVKKLKEMNENGVEPP--PECISSVIPGWFSEISPMWPGEAHSLKVE 60

Query: 61 KILFRGNSDYQDVMVFQ 78
          KILF+G SDYQ+VMVFQ
Sbjct: 61 KILFQGKSDYQNVMVFQ 75

[Close]

BLAST of CmaCh12G000020 vs. NCBI nr
Match: gi|658309898|ref|NP_001280805.1| (uncharacterized protein LOC103451952 [Malus domestica])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 3  SDNSSASASDLSVKRSRDEDQNGTPPSS-----------QPDSISSVIPGWFSEISPMWP 62
          +D S A ++D  VKR R+E++NG+  ++           +PDS+S+VIPGWFSEIS MWP
Sbjct: 2  ADESVAGSADFPVKRPREEEENGSAAAASAVSMEPDGGKEPDSVSAVIPGWFSEISSMWP 61

Query: 63 GEAHSLKVEKILFRGNSDYQDVMVFQ 78
          GEAHSLK+EKILF+G SDYQ+VMVFQ
Sbjct: 62 GEAHSLKIEKILFQGKSDYQNVMVFQ 87

The following BLAST results are available for this feature:

BLAST of CmaCh12G000020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPD1_PEA	1.4e-20	61.73	Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1	[more]
SPD2_ARATH	1.2e-19	60.00	Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2	[more]
SPDE_COFAR	1.3e-18	89.13	Spermidine synthase OS=Coffea arabica PE=2 SV=1	[more]
SPD1_ARATH	3.9e-18	59.04	Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1	[more]
SPD2_DATST	1.1e-17	68.33	Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1	[more]

BLAST of CmaCh12G000020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103YAQ3_CYNCS	1.9e-19	67.53	Spermidine/spermine synthase family OS=Cynara cardunculus var. scolymus GN=Ccrd_...	[more]
M5XC54_PRUPE	5.5e-19	61.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008283mg PE=3 SV=1	[more]
A0A067JUP7_JATCU	7.2e-19	62.35	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17721 PE=3 SV=1	[more]
U3PXP6_CAMSI	9.4e-19	66.23	Spermidine synthase OS=Camellia sinensis PE=2 SV=1	[more]
Q8GTQ6_MALDO	1.2e-18	58.14	Spermidine synthase OS=Malus domestica GN=MdSPDS1 PE=2 SV=2	[more]

BLAST of CmaCh12G000020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70310.1	6.9e-21	60.00	spermidine synthase 2	[more]
AT1G23820.1	2.2e-19	59.04	spermidine synthase 1	[more]
AT5G53120.6	1.9e-10	46.15	spermidine synthase 3	[more]

BLAST of CmaCh12G000020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976920912\|gb\|KVI05620.1\|	2.7e-19	67.53	Spermidine/spermine synthase family [Cynara cardunculus var. scolymus]	[more]
gi\|596142018\|ref\|XP_007222503.1\|	7.9e-19	61.25	hypothetical protein PRUPE_ppa008283mg [Prunus persica]	[more]
gi\|802718749\|ref\|XP_012085346.1\|	1.0e-18	62.35	PREDICTED: spermidine synthase 1 [Jatropha curcas]	[more]
gi\|546234995\|gb\|AGW82430.1\|	1.3e-18	66.23	spermidine synthase [Camellia sinensis]	[more]
gi\|658309898\|ref\|NP_001280805.1\|	1.8e-18	58.14	uncharacterized protein LOC103451952 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0008150	biological_process
biological_process	GO:0006595	polyamine metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004766	spermidine synthase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G000020.1	CmaCh12G000020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.30.140.10		coord: 31..77 score: 4.0
None	No IPR available	PANTHER	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	coord: 4..76 score: 5.8
None	No IPR available	PANTHER	PTHR11558:SF28	SUBFAMILY NOT NAMED	coord: 4..76 score: 5.8
None	No IPR available	PFAM	PF01564	Spermine_synth	coord: 41..77 score: 8.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G000020	CmoCh18G008100	Cucurbita moschata (Rifu)	cmacmoB180
CmaCh12G000020	CmoCh04G018040	Cucurbita moschata (Rifu)	cmacmoB189
CmaCh12G000020	Lsi04G005350	Bottle gourd (USVL1VR-Ls)	cmalsiB170
CmaCh12G000020	Cp4.1LG09g05030	Cucurbita pepo (Zucchini)	cmacpeB167
CmaCh12G000020	Cp4.1LG01g15210	Cucurbita pepo (Zucchini)	cmacpeB186
CmaCh12G000020	Cp4.1LG07g00040	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G000020	MELO3C012007.2	Melon (DHL92) v3.6.1	cmamedB160
CmaCh12G000020	CsaV3_5G031670	Cucumber (Chinese Long) v3	cmacucB0217
CmaCh12G000020	Cla97C05G107370	Watermelon (97103) v2	cmawmbB182
CmaCh12G000020	CsGy5G022310	Cucumber (Gy14) v2	cgybcmaB590
CmaCh12G000020	Carg20518	Silver-seed gourd	carcmaB0881
CmaCh12G000020	Carg14459	Silver-seed gourd	carcmaB1011

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh12G000020	CmaCh18G008070	Cucurbita maxima (Rimu)	cmacmaB177
CmaCh12G000020	CmaCh04G017190	Cucurbita maxima (Rimu)	cmacmaB189

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G000020	Cucurbita maxima (Rimu)	cmacmaB193
CmaCh12G000020	Cucurbita moschata (Rifu)	cmacmoB176
CmaCh12G000020	Cucurbita moschata (Rifu)	cmacmoB193
CmaCh12G000020	Cucurbita pepo (Zucchini)	cmacpeB173
CmaCh12G000020	Silver-seed gourd	carcmaB0704