CmaCh11G016640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G016640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 10956399 .. 10956731 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCGTTTCTCCACTTTTATATTCCTCCTCATCCTTAGTGCTTTGATGTTGATGAACTTCGATTTTTTTGTGATGACGGTGAGTGCGAGACATCTTTTGGAGTTGCCATTACTCAAGGTATCCGAAGAGCTTTCGAAGCTAGAAGTACCCATTTTATCAAAGCCTAAGCTTCCTCCATTGCTGAAGGTTGAGTTGCCTCATTTGGAAAAGCCTAAAGTGCCTGAATTGCCAAACACTGAGCTCCCAAAATTACCTCAGTTGCCTCCTTTGGAAAAACCTAAAGTGCCGGAATTGCCTAAACCTGAACTCCCAAAATTACCTCATTGA

mRNA sequence

ATGGCTACTCGTTTCTCCACTTTTATATTCCTCCTCATCCTTAGTGCTTTGATGTTGATGAACTTCGATTTTTTTGTGATGACGGTGAGTGCGAGACATCTTTTGGAGTTGCCATTACTCAAGGTATCCGAAGAGCTTTCGAAGCTAGAAGTACCCATTTTATCAAAGCCTAAGCTTCCTCCATTGCTGAAGGTTGAGTTGCCTCATTTGGAAAAGCCTAAAGTGCCTGAATTGCCAAACACTGAGCTCCCAAAATTACCTCAGTTGCCTCCTTTGGAAAAACCTAAAGTGCCGGAATTGCCTAAACCTGAACTCCCAAAATTACCTCATTGA

Coding sequence (CDS)

ATGGCTACTCGTTTCTCCACTTTTATATTCCTCCTCATCCTTAGTGCTTTGATGTTGATGAACTTCGATTTTTTTGTGATGACGGTGAGTGCGAGACATCTTTTGGAGTTGCCATTACTCAAGGTATCCGAAGAGCTTTCGAAGCTAGAAGTACCCATTTTATCAAAGCCTAAGCTTCCTCCATTGCTGAAGGTTGAGTTGCCTCATTTGGAAAAGCCTAAAGTGCCTGAATTGCCAAACACTGAGCTCCCAAAATTACCTCAGTTGCCTCCTTTGGAAAAACCTAAAGTGCCGGAATTGCCTAAACCTGAACTCCCAAAATTACCTCATTGA

Protein sequence

MATRFSTFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPLLKVELPHLEKPKVPELPNTELPKLPQLPPLEKPKVPELPKPELPKLPH

Homology

[Close]

BLAST of CmaCh11G016640 vs. TrEMBL
Match: A0A0R0E333_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_U038200 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 6   STFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPLLKV 65
           ST IF  ++  LML++     M   AR+LLE         L K EVP L KP+LPPL KV
Sbjct: 7   STVIFSFVV--LMLLSASSHTMVAGARNLLE-------STLPKPEVPQLPKPELPPLPKV 66

Query: 66  -ELPHLEKPKVPELPNTELPKLPQLPPLEKPKVPELPK----PELPKLP 110
            ELP  E PK+P  P  ELPK+P+LP LEKPKVPELPK    P++PKLP
Sbjct: 67  PELPKAELPKIPTFPKPELPKVPELPKLEKPKVPELPKVSEIPKVPKLP 106

[Close]

BLAST of CmaCh11G016640 vs. TrEMBL
Match: K7K0T1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 6   STFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPLLKV 65
           ST IF  ++  LML++     M   AR+LLE         L K EVP L KP+LPPL KV
Sbjct: 48  STVIFSFVV--LMLLSASSHTMVAGARNLLE-------STLPKPEVPQLPKPELPPLPKV 107

Query: 66  -ELPHLEKPKVPELPNTELPKLPQLPPLEKPKVPELPK----PELPKLP 110
            ELP  E PK+P  P  ELPK+P+LP LEKPKVPELPK    P++PKLP
Sbjct: 108 PELPKAELPKIPTFPKPELPKVPELPKLEKPKVPELPKVSEIPKVPKLP 147

[Close]

BLAST of CmaCh11G016640 vs. TrEMBL
Match: C6TL89_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-10
Identity = 58/109 (53.21%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 6   STFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPLLKV 65
           ST IF  ++  LML +     M   AR+LLE         L K EVP L KP+LPPL KV
Sbjct: 7   STVIFSFVV--LMLSSASSHTMVAGARNLLE-------STLPKPEVPQLPKPELPPLPKV 66

Query: 66  -ELPHLEKPKVPELPNTELPKLPQLPPLEKPKVPELPK----PELPKLP 110
            ELP  E PK+P  P  ELPK+P+LP LEKPKVPELPK    P++PKLP
Sbjct: 67  PELPKAELPKIPTFPKPELPKVPELPKLEKPKVPELPKVSEIPKVPKLP 106

[Close]

BLAST of CmaCh11G016640 vs. TrEMBL
Match: M5VHP3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020401mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 1


Query: 4   RFSTFIF-LLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPL 63
           R   F+  LL+L A  LM+     M   AR LLE  L +V E L K E+P L KP+LP L
Sbjct: 5   RLPAFVLPLLLLFAFSLMSTK--TMVAGARFLLETSLPQVPE-LPKPELPQLPKPELPHL 64

Query: 64  LKVELPHLEKPKVPELPNTELPKLP--QLPPLEKPKVPELPKPELPKLP 110
            K ELP + KP++P+LP  ELP+LP  +LPPL KP++P+ PKPELP+ P
Sbjct: 65  PKPELPQVPKPELPQLPKPELPQLPKPELPPLPKPELPQFPKPELPQFP 110

[Close]

BLAST of CmaCh11G016640 vs. TrEMBL
Match: A0A067E8H7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031697mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 52/111 (46.85%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 6   STFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSE-ELSKLEVPILSKPKLPPLLK 65
           S F+ LL+++  ++ N    +  V AR LLE  L ++ + EL K E+P LSKP+LP   K
Sbjct: 8   SFFLTLLLITFSLMCNN---INAVGARLLLETALPEIPKPELPKFELPPLSKPELP---K 67

Query: 66  VELPHLEKPKVPELPNTELPKLPQLPPLEKPK------VPELPKPELPKLP 110
           VELP L KP++PE+P  ELPK+P+LP + +PK      VPE+P+PELP+ P
Sbjct: 68  VELPPLSKPELPEIPKPELPKVPELPEIPEPKLPKKLEVPEIPQPELPEFP 112

[Close]

BLAST of CmaCh11G016640 vs. TAIR10
Match: AT5G09530.1 (AT5G09530.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.0e-11
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 45  ELSKL-EVPILSKPKLPPLLKVELPHL-EKPKVPELPNTELPKLPQLPPLEKPKVPELPK 104
           EL KL EVP L  PK+P + K ELP + E PK+PE+   ELPKLP++P LE PKVPE+ K
Sbjct: 198 ELPKLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLEAPKVPEIQK 257

Query: 105 PELPKLP 110
           PELPK+P
Sbjct: 258 PELPKMP 264

[Close]

BLAST of CmaCh11G016640 vs. TAIR10
Match: AT5G09520.1 (AT5G09520.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 65  VELPHLEKPKVPELPNTELPKLPQLPPLEKPKVPELPKPELPKLP 110
           +E P  E P  PELP  E+PKLP+ P LE PK+PE+PKPE+PKLP
Sbjct: 36  LEEPKPEIPTFPELPKPEMPKLPEFPKLELPKLPEIPKPEMPKLP 80

[Close]

BLAST of CmaCh11G016640 vs. NCBI nr
Match: gi|659110269|ref|XP_008455138.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 69/118 (58.47%), Postives = 82/118 (69.49%), Query Frame = 1


Query: 4   RFSTFIFLLILSALMLM-NFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPL 63
           R+STF   LI   LM+M +FDFF+MT SARHLLE PL KV EEL KLE+P L+KP+LPPL
Sbjct: 5   RYSTFASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIPTLAKPELPPL 64

Query: 64  LKVE------LPHLEKPKVPELPNTELPKLPQLPPLEK------PKVPELPKPELPKL 109
            K E      LP LEKPK+PEL   ELPKLP+LP +        P+VP +PK +LPKL
Sbjct: 65  PKFELPPLPHLPPLEKPKLPELSKPELPKLPELPKVPNLDLSKIPQVPSVPKFDLPKL 122

[Close]

BLAST of CmaCh11G016640 vs. NCBI nr
Match: gi|659110271|ref|XP_008455139.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 72/121 (59.50%), Postives = 83/121 (68.60%), Query Frame = 1


Query: 1   MAT-RFSTFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKL 60
           MAT R ST    LIL  LM+M+FDF +M+VSARHLLE PL  V EEL K E+P L KP+L
Sbjct: 1   MATHRLSTLKAPLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIPTLPKPEL 60

Query: 61  PPLLKVELPHL------EKPKVPELPNTELPKLPQLPPLEK------PKVPELPKPELPK 109
           PPL KVELP L      EKPKVPELP  ELPKLP+LP +        P+VP +PK +LPK
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPNFDHSKVPEVPTIPKFDLPK 120

[Close]

BLAST of CmaCh11G016640 vs. NCBI nr
Match: gi|778724535|ref|XP_011658824.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-15
Identity = 67/119 (56.30%), Postives = 78/119 (65.55%), Query Frame = 1


Query: 4   RFST-FIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKLPPL 63
           R+ST F   LI   L +M+FDFF MT SARHLLE PL KV EEL K E+P L KP+LPPL
Sbjct: 5   RYSTVFALHLIFGVLTMMSFDFF-MTASARHLLETPLPKVPEELPKPEMPTLPKPQLPPL 64

Query: 64  LKVE------LPHLEKPKVPELPNTELPKLPQLPPLEK------PKVPELPKPELPKLP 110
            K E      LP LEKPK+PELP  ELPK P+LP +        P+VP LPK ++ KLP
Sbjct: 65  PKFELPPLPHLPPLEKPKLPELPKYELPKFPELPKVPSFDLSKIPEVPSLPKFDISKLP 122

[Close]

BLAST of CmaCh11G016640 vs. NCBI nr
Match: gi|449438230|ref|XP_004136892.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 71/138 (51.45%), Postives = 83/138 (60.14%), Query Frame = 1


Query: 1   MATR-FSTFIFLLILSALML-MNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPK 60
           MATR  ST    L+L  L++ M+FDF +M+VSARHLLE P+    E L K E+P L K +
Sbjct: 1   MATRPLSTLKASLVLGILIVTMSFDFLIMSVSARHLLETPIPHGPEGLPKPEIPTLPKSE 60

Query: 61  LPPLLKVE------LPHLEKPKVPELPNTELPKLPQLPPL---EKPKVPE---------- 110
           LPPL KVE      LP LEKPKVPELP  ELPKLP+LP +   +  KVPE          
Sbjct: 61  LPPLPKVELPPLPHLPPLEKPKVPELPKPELPKLPELPKVPNFDHSKVPEIPTMPKFDLP 120

[Close]

BLAST of CmaCh11G016640 vs. NCBI nr
Match: gi|778724533|ref|XP_011658823.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 71/146 (48.63%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 1   MAT-RFSTFIFLLILSALMLMNFDFFVMTVSARHLLELPLLKVSEELSKLEVPILSKPKL 60
           MAT RFST +F LIL   MLMNFD  +MTV AR+LLE PL    EEL K E+P L   + 
Sbjct: 1   MATLRFSTLVFPLILGVFMLMNFDISIMTVDARYLLETPL---PEELPKPEIPSLPNLEF 60

Query: 61  PPLLKVE------LPHLEKPKVPELPNT------------------------ELPKLPQL 110
           PPL KVE      LP LEKPK+PELP                          E PK P+L
Sbjct: 61  PPLPKVELPPLPHLPPLEKPKLPELPKVPNLDHSKDSSNVPKLSEVSELPKPEFPKFPEL 120

The following BLAST results are available for this feature:

BLAST of CmaCh11G016640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G016640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0R0E333_SOYBN	3.0e-10	53.21	Uncharacterized protein OS=Glycine max GN=GLYMA_U038200 PE=4 SV=1	[more]
K7K0T1_SOYBN	3.0e-10	53.21	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
C6TL89_SOYBN	6.6e-10	53.21	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
M5VHP3_PRUPE	2.5e-09	50.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020401mg PE=4 SV=1	[more]
A0A067E8H7_CITSI	1.2e-08	46.85	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031697mg PE=4 SV=1	[more]

BLAST of CmaCh11G016640 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09530.1	7.0e-11	61.19	hydroxyproline-rich glycoprotein family protein	[more]
AT5G09520.1	2.7e-07	62.22	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CmaCh11G016640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110269\|ref\|XP_008455138.1\|	2.5e-18	58.47	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|659110271\|ref\|XP_008455139.1\|	2.5e-18	59.50	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|778724535\|ref\|XP_011658824.1\|	5.7e-15	56.30	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|449438230\|ref\|XP_004136892.1\|	1.8e-13	51.45	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|778724533\|ref\|XP_011658823.1\|	1.8e-13	48.63	PREDICTED: periaxin-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G016640.1	CmaCh11G016640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G016640	Silver-seed gourd	carcmaB0399
CmaCh11G016640	Silver-seed gourd	carcmaB0405
CmaCh11G016640	Silver-seed gourd	carcmaB0525
CmaCh11G016640	Cucumber (Chinese Long) v3	cmacucB0171
CmaCh11G016640	Cucumber (Chinese Long) v3	cmacucB0180
CmaCh11G016640	Watermelon (97103) v2	cmawmbB149
CmaCh11G016640	Wax gourd	cmawgoB0116
CmaCh11G016640	Cucurbita maxima (Rimu)	cmacmaB135
CmaCh11G016640	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh11G016640	Cucurbita maxima (Rimu)	cmacmaB163
CmaCh11G016640	Cucumber (Gy14) v1	cgycmaB0222
CmaCh11G016640	Cucumber (Gy14) v1	cgycmaB0620
CmaCh11G016640	Cucumber (Gy14) v1	cgycmaB0621
CmaCh11G016640	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G016640	Cucurbita moschata (Rifu)	cmacmoB133
CmaCh11G016640	Cucurbita moschata (Rifu)	cmacmoB143
CmaCh11G016640	Cucurbita moschata (Rifu)	cmacmoB156
CmaCh11G016640	Wild cucumber (PI 183967)	cmacpiB143
CmaCh11G016640	Wild cucumber (PI 183967)	cmacpiB153
CmaCh11G016640	Cucumber (Chinese Long) v2	cmacuB146
CmaCh11G016640	Cucumber (Chinese Long) v2	cmacuB156
CmaCh11G016640	Melon (DHL92) v3.5.1	cmameB096
CmaCh11G016640	Melon (DHL92) v3.5.1	cmameB098
CmaCh11G016640	Melon (DHL92) v3.5.1	cmameB145
CmaCh11G016640	Watermelon (Charleston Gray)	cmawcgB075
CmaCh11G016640	Watermelon (97103) v1	cmawmB075
CmaCh11G016640	Watermelon (97103) v1	cmawmB118
CmaCh11G016640	Cucurbita pepo (Zucchini)	cmacpeB114
CmaCh11G016640	Cucurbita pepo (Zucchini)	cmacpeB116
CmaCh11G016640	Cucurbita pepo (Zucchini)	cmacpeB136
CmaCh11G016640	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G016640	Bottle gourd (USVL1VR-Ls)	cmalsiB115
CmaCh11G016640	Bottle gourd (USVL1VR-Ls)	cmalsiB117
CmaCh11G016640	Cucumber (Gy14) v2	cgybcmaB895
CmaCh11G016640	Cucumber (Gy14) v2	cgybcmaB902
CmaCh11G016640	Melon (DHL92) v3.6.1	cmamedB104
CmaCh11G016640	Melon (DHL92) v3.6.1	cmamedB106