CmaCh11G016620 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G016620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 10951353 .. 10951706 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTGCGAGACATCTTTTGGAGATGCCACTACCCAAGATGCCTGAAGAGCTTCCGAAGCCAGAAGTACCCAGTTTGTCAAAGCCCGAGCTTCCTCCATTGCCGAAGGTTGAGTTACCTCCTTTGGAAAAGCCTAAAGTACCCAAATTGCCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGAGGTTCCCGAAGTACCAAAATTGCCCAACTTGCCTAAACCCGAACTTCCTAAGTTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATCCCTTCGTTCAACCCACCACATATATCTACCCTTAAACCTTGA

mRNA sequence

ATGATGAGTGCGAGACATCTTTTGGAGATGCCACTACCCAAGATGCCTGAAGAGCTTCCGAAGCCAGAAGTACCCAGTTTGTCAAAGCCCGAGCTTCCTCCATTGCCGAAGGTTGAGTTACCTCCTTTGGAAAAGCCTAAAGTACCCAAATTGCCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGAGGTTCCCGAAGTACCAAAATTGCCCAACTTGCCTAAACCCGAACTTCCTAAGTTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATCCCTTCGTTCAACCCACCACATATATCTACCCTTAAACCTTGA

Coding sequence (CDS)

ATGATGAGTGCGAGACATCTTTTGGAGATGCCACTACCCAAGATGCCTGAAGAGCTTCCGAAGCCAGAAGTACCCAGTTTGTCAAAGCCCGAGCTTCCTCCATTGCCGAAGGTTGAGTTACCTCCTTTGGAAAAGCCTAAAGTACCCAAATTGCCGAAACCTGAGCTCCCAAAATTACCTCAATTGCCTAAATTTGAGGTTCCCGAAGTACCAAAATTGCCCAACTTGCCTAAACCCGAACTTCCTAAGTTGCCGGAATTAACACCTCTCCCAAAGCCTGTTTTGCCTACCCTTCCAAAGGACATTCCTATCCCTTCGTTCAACCCACCACATATATCTACCCTTAAACCTTGA

Protein sequence

MMSARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVELPPLEKPKVPKLPKPELPKLPQLPKFEVPEVPKLPNLPKPELPKLPELTPLPKPVLPTLPKDIPIPSFNPPHISTLKP

Homology

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BLAST of CmaCh11G016620 vs. TrEMBL
Match: A0A067EC93_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046981mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.0e-18
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 4   ARHLLEMPLPKMPE--------------ELPKPEVPSLSKPELPPLPKVELPPLEKPKVP 63
           ARHLLE+ LP++P+              ELPK E+P LSKPE   LPKVELPPL KP++P
Sbjct: 1   ARHLLEVALPEIPKPELPKVELSPFPKPELPKVELPPLSKPE---LPKVELPPLTKPELP 60

Query: 64  KLPKPELPKLPQLPKFEVPEVPK---LPNLPKPELPKLPELTPLPKPVLPTLPKDIP--- 118
           ++PKPELPK+P+LP+F  P +PK   +P +PKPELP+LPE   +PKP LP LP ++P   
Sbjct: 61  EIPKPELPKVPELPEFPKPALPKKLEVPEIPKPELPELPEFPEIPKPELPELP-ELPSFP 120

[Close]

BLAST of CmaCh11G016620 vs. TrEMBL
Match: A0A059BAU3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00975 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 69/123 (56.10%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPE------VPSLSKPELPPLPKVELPP---LEKPKVPKLP 61
           + AR LLE+ LP++PE LPKPE      +PSL KPELP LPKVELP    L KP++P +P
Sbjct: 27  VEARQLLELALPEVPE-LPKPELPHLPDIPSLPKPELPSLPKVELPSVPELPKPELPTIP 86

Query: 62  KPELPKLPQLPKFEVPEVPKLPNLPKPELPKLPELTPLPKPVLPTLPKDIPIPSFNPPHI 116
           KPELP++P+LPK E P +P + +LPKPELP++PE+  LPKP LP LP    IPS   P +
Sbjct: 87  KPELPEVPELPKPESPHLPDIVSLPKPELPEVPEVPELPKPELPHLP---DIPSLPKPEL 145

[Close]

BLAST of CmaCh11G016620 vs. TrEMBL
Match: M5VLD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 73/156 (46.79%), Postives = 86/156 (55.13%), Query Frame = 1


Query: 4   ARHLLEMPLPKMPE---------------ELPKPEVPSLSKPELPPLPKVELPPLEKPKV 63
           AR LLE  LP++PE               +LPKPE+P L KPELP LPK ELP L KP++
Sbjct: 5   ARFLLETSLPQVPELPKPELPPLHKPELPQLPKPELPQLPKPELPTLPKPELPTLPKPEL 64

Query: 64  PKLPKPEL--------------------PKLPQLPKFEVPEVPKLPNLPKPELPKLPELT 115
           P LPKP+L                    P +P+LPK E+P  P  P LPKPELPKLPE+ 
Sbjct: 65  PTLPKPKLPPVPHVPTLPKPEGLKLAEEPHVPELPKPELPPRPNFPTLPKPELPKLPEIP 124

[Close]

BLAST of CmaCh11G016620 vs. TrEMBL
Match: A0A059BBS5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00973 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-17
Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPE------VPSLSKPELPPLPKVELPPL------EKPKVP 61
           + AR LLE+ LP++PE LPKPE      +PSL KPELP LPKVELP +      E P+VP
Sbjct: 27  VKARQLLELALPEVPE-LPKPELPHLPDIPSLPKPELPSLPKVELPSVPELPKPELPEVP 86

Query: 62  KLPKPELPKLPQLPKFEVPEVPKLPNLPKPELPKLPELTPLPKPVLPTLPK-DIP-IPSF 116
           +LPKPELP LP +     PE+P++P LPKPELP LP +  LPKP LP+LPK ++P IP  
Sbjct: 87  ELPKPELPHLPDIVSLPKPELPEVPELPKPELPHLPNIPSLPKPELPSLPKVELPSIPEL 146

[Close]

BLAST of CmaCh11G016620 vs. TrEMBL
Match: A0A059BBD0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00980 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.5e-16
Identity = 62/119 (52.10%), Postives = 84/119 (70.59%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVEL---PPLEKPKVPKLPKPELPK 61
           + AR LLE+ LP++PE    P++PSL KPE P LPKVEL   P L KP++P +PKPELP+
Sbjct: 27  VEARQLLELALPEVPELPHLPDIPSLPKPEFPSLPKVELPSVPELPKPELPTIPKPELPE 86

Query: 62  LPQLPKFEV-----------PEVPKLPNLPKPELPKLPELTPLPKPVLPTLPKDIPIPS 107
           +P+LPK E+           PE+P++P LPKPELP +P++  LPKP LP+LPK + +PS
Sbjct: 87  VPELPKPEMPHLPDIVSLPKPELPEVPELPKPELPHIPDIPSLPKPELPSLPK-VELPS 144

[Close]

BLAST of CmaCh11G016620 vs. TAIR10
Match: AT5G09530.1 (AT5G09530.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-15
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 12  LPKMPEELPKPEVPSLSKPELPPLPKVELPPLEKPKVPKLPKPELPKLPQLPK---FEVP 71
           LPKMPE    P++P + KPELP LP  E+P LE PKVP++ KPELPK+P+LPK    + P
Sbjct: 221 LPKMPE---LPKMPEIQKPELPKLP--EVPKLEAPKVPEIQKPELPKMPELPKMPEIQKP 280

Query: 72  EVPKLPNLPKPELPKLPELTPLPKPVLPTLPK 101
           E+PK+P + KPELPK+PE   +PKP LPT+P+
Sbjct: 281 ELPKMPEIQKPELPKVPE---VPKPELPTVPE 304

[Close]

BLAST of CmaCh11G016620 vs. TAIR10
Match: AT5G09520.1 (AT5G09520.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVELPPLEKPKVPKLPKPELPKLPQ 61
           + AR LLE P P++P        P L KPE+P LP  E P LE PK+P++PKPE+PKLP+
Sbjct: 30  VGARRLLEEPKPEIPT------FPELPKPEMPKLP--EFPKLELPKLPEIPKPEMPKLPE 89

Query: 62  LPKFEV---PEVPKLPNLPKPELPKLPELTPLPKPVLPTLPKDIPIPSFNPP 111
           + K E+   PE+PK+P  PK + PKLPE   LPK      P++  +P+F  P
Sbjct: 90  IQKPELPTFPELPKMPEFPKFDFPKLPE---LPK------PEETKVPAFTMP 124

[Close]

BLAST of CmaCh11G016620 vs. NCBI nr
Match: gi|659110271|ref|XP_008455139.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 5.5e-32
Identity = 94/168 (55.95%), Postives = 107/168 (63.69%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVE------LPPLEKPKVPKLPKPE 61
           +SARHLLE PLP +PEELPKPE+P+L KPELPPLPKVE      LPPLEKPKVP+LPKPE
Sbjct: 30  VSARHLLETPLPHVPEELPKPEIPTLPKPELPPLPKVELPPLPHLPPLEKPKVPELPKPE 89

Query: 62  LPKLPQLPKF--------------------------------EVPEVPKLPNLPKPEL-- 118
           LPKLP+LPK                                 E+P++P+LP++PKPEL  
Sbjct: 90  LPKLPELPKVPNFDHSKVPEVPTIPKFDLPKLAEVSDHLPKPELPKLPELPSVPKPELPK 149

[Close]

BLAST of CmaCh11G016620 vs. NCBI nr
Match: gi|778724535|ref|XP_011658824.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 87/152 (57.24%), Postives = 103/152 (67.76%), Query Frame = 1


Query: 3   SARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVELPPL------EKPKVPKLPKPEL 62
           SARHLLE PLPK+PEELPKPE+P+L KP+LPPLPK ELPPL      EKPK+P+LPK EL
Sbjct: 31  SARHLLETPLPKVPEELPKPEMPTLPKPQLPPLPKFELPPLPHLPPLEKPKLPELPKYEL 90

Query: 63  PKLPQLPKF-------------------------------EVPEVPKLPNLPKPELPKLP 118
           PK P+LPK                                E+P++P+LPN+PKPELPKLP
Sbjct: 91  PKFPELPKVPSFDLSKIPEVPSLPKFDISKLPEVSNPPKSELPKLPELPNVPKPELPKLP 150

[Close]

BLAST of CmaCh11G016620 vs. NCBI nr
Match: gi|449438230|ref|XP_004136892.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 5.7e-29
Identity = 91/168 (54.17%), Postives = 103/168 (61.31%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVE------LPPLEKPKVPKLPKPE 61
           +SARHLLE P+P  PE LPKPE+P+L K ELPPLPKVE      LPPLEKPKVP+LPKPE
Sbjct: 31  VSARHLLETPIPHGPEGLPKPEIPTLPKSELPPLPKVELPPLPHLPPLEKPKVPELPKPE 90

Query: 62  LPKLPQLPKF--------------------------------EVPEVPKLPNLPKPELPK 118
           LPKLP+LPK                                 E+P++P+LPNLPKPELPK
Sbjct: 91  LPKLPELPKVPNFDHSKVPEIPTMPKFDLPKLAEVPDHLPKPELPKLPELPNLPKPELPK 150

[Close]

BLAST of CmaCh11G016620 vs. NCBI nr
Match: gi|659110269|ref|XP_008455138.1| (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 6.9e-27
Identity = 89/180 (49.44%), Postives = 106/180 (58.89%), Query Frame = 1


Query: 3   SARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVELPPL------EKPKVPKLPKPEL 62
           SARHLLE PLPK+PEELPK E+P+L+KPELPPLPK ELPPL      EKPK+P+L KPEL
Sbjct: 32  SARHLLETPLPKVPEELPKLEIPTLAKPELPPLPKFELPPLPHLPPLEKPKLPELSKPEL 91

Query: 63  -----------------PKLPQLPKF----------------------------EVPEVP 118
                            P++P +PKF                            E+P++P
Sbjct: 92  PKLPELPKVPNLDLSKIPQVPSVPKFDLPKLSEVSNPPQSELPKSPELSNGLKPELPKLP 151

[Close]

BLAST of CmaCh11G016620 vs. NCBI nr
Match: gi|778724533|ref|XP_011658823.1| (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 9.4e-24
Identity = 80/149 (53.69%), Postives = 92/149 (61.74%), Query Frame = 1


Query: 2   MSARHLLEMPLPKMPEELPKPEVPSLSKPELPPLPKVELPPL------------------ 61
           + AR+LLE PLP   EELPKPE+PSL   E PPLPKVELPPL                  
Sbjct: 30  VDARYLLETPLP---EELPKPEIPSLPNLEFPPLPKVELPPLPHLPPLEKPKLPELPKVP 89

Query: 62  ------EKPKVPKL------PKPELPKLPQLPKF---EVPEVPKLPNLPKPELPKLPELT 118
                 +   VPKL      PKPE PK P+LP F   EVP++P+LPN+PKPELPKLPE  
Sbjct: 90  NLDHSKDSSNVPKLSEVSELPKPEFPKFPELPNFPKPEVPKLPELPNVPKPELPKLPEFP 149

The following BLAST results are available for this feature:

BLAST of CmaCh11G016620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G016620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067EC93_CITSI	7.0e-18	51.85	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046981mg PE=4 S...	[more]
A0A059BAU3_EUCGR	1.2e-17	56.10	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00975 PE=4 SV=1	[more]
M5VLD6_PRUPE	2.7e-17	46.79	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023337mg PE=4 SV=1	[more]
A0A059BBS5_EUCGR	4.5e-17	53.91	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00973 PE=4 SV=1	[more]
A0A059BBD0_EUCGR	6.5e-16	52.10	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00980 PE=4 SV=1	[more]

BLAST of CmaCh11G016620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09530.1	2.9e-15	57.61	hydroxyproline-rich glycoprotein family protein	[more]
AT5G09520.1	2.5e-11	46.43	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CmaCh11G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110271\|ref\|XP_008455139.1\|	5.5e-32	55.95	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|778724535\|ref\|XP_011658824.1\|	1.8e-30	57.24	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|449438230\|ref\|XP_004136892.1\|	5.7e-29	54.17	PREDICTED: periaxin-like [Cucumis sativus]	[more]
gi\|659110269\|ref\|XP_008455138.1\|	6.9e-27	49.44	PREDICTED: periaxin-like [Cucumis melo]	[more]
gi\|778724533\|ref\|XP_011658823.1\|	9.4e-24	53.69	PREDICTED: periaxin-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G016620.1	CmaCh11G016620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G016620	Cucumber (Gy14) v2	cgybcmaB895
CmaCh11G016620	Cucumber (Gy14) v2	cgybcmaB902
CmaCh11G016620	Melon (DHL92) v3.6.1	cmamedB104
CmaCh11G016620	Melon (DHL92) v3.6.1	cmamedB106
CmaCh11G016620	Silver-seed gourd	carcmaB0399
CmaCh11G016620	Silver-seed gourd	carcmaB0405
CmaCh11G016620	Silver-seed gourd	carcmaB0525
CmaCh11G016620	Cucumber (Chinese Long) v3	cmacucB0171
CmaCh11G016620	Cucumber (Chinese Long) v3	cmacucB0180
CmaCh11G016620	Watermelon (97103) v2	cmawmbB149
CmaCh11G016620	Wax gourd	cmawgoB0116
CmaCh11G016620	Cucurbita maxima (Rimu)	cmacmaB135
CmaCh11G016620	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh11G016620	Cucurbita maxima (Rimu)	cmacmaB163
CmaCh11G016620	Cucumber (Gy14) v1	cgycmaB0222
CmaCh11G016620	Cucumber (Gy14) v1	cgycmaB0620
CmaCh11G016620	Cucumber (Gy14) v1	cgycmaB0621
CmaCh11G016620	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G016620	Cucurbita moschata (Rifu)	cmacmoB133
CmaCh11G016620	Cucurbita moschata (Rifu)	cmacmoB143
CmaCh11G016620	Cucurbita moschata (Rifu)	cmacmoB156
CmaCh11G016620	Wild cucumber (PI 183967)	cmacpiB143
CmaCh11G016620	Wild cucumber (PI 183967)	cmacpiB153
CmaCh11G016620	Cucumber (Chinese Long) v2	cmacuB146
CmaCh11G016620	Cucumber (Chinese Long) v2	cmacuB156
CmaCh11G016620	Melon (DHL92) v3.5.1	cmameB096
CmaCh11G016620	Melon (DHL92) v3.5.1	cmameB098
CmaCh11G016620	Melon (DHL92) v3.5.1	cmameB145
CmaCh11G016620	Watermelon (Charleston Gray)	cmawcgB075
CmaCh11G016620	Watermelon (97103) v1	cmawmB075
CmaCh11G016620	Watermelon (97103) v1	cmawmB118
CmaCh11G016620	Cucurbita pepo (Zucchini)	cmacpeB114
CmaCh11G016620	Cucurbita pepo (Zucchini)	cmacpeB116
CmaCh11G016620	Cucurbita pepo (Zucchini)	cmacpeB136
CmaCh11G016620	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G016620	Bottle gourd (USVL1VR-Ls)	cmalsiB115
CmaCh11G016620	Bottle gourd (USVL1VR-Ls)	cmalsiB117