CmaCh11G016280 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G016280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	Cma_Chr11 : 10711031 .. 10711519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTGAATCTTGAATGTTCGTTGAGAACGGTTCTGAATCTTGAATGTTTGTTGAGAACGGTTCTAAATCTTGAATGTTCGTTGAGAACGGTTCTAAATCTTGAATGTTCGTTGAGAACGGTTCTGAATTTTGAATGTTTATTGAGAACGATTCTGAATCTTGAATGTTCATTGAGAACGATTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACAGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACAGTTCCGAATCTTGAATGTTCATTGAGAACTGTTCCGAATCTTGAATGTTCATTGAGATTGTTGTGA

mRNA sequence

ATGGTTCTGAATCTTGAATGTTCGTTGAGAACGGTTCTGAATCTTGAATGTTTGTTGAGAACGGTTCTAAATCTTGAATGTTCGTTGAGAACGGTTCTAAATCTTGAATGTTCGTTGAGAACGGTTCTGAATTTTGAATGTTTATTGAGAACGATTCTGAATCTTGAATGTTCATTGAGAACGATTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACAGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACAGTTCCGAATCTTGAATGTTCATTGAGAACTGTTCCGAATCTTGAATGTTCATTGAGATTGTTGTGA

Coding sequence (CDS)

ATGGTTCTGAATCTTGAATGTTCGTTGAGAACGGTTCTGAATCTTGAATGTTTGTTGAGAACGGTTCTAAATCTTGAATGTTCGTTGAGAACGGTTCTAAATCTTGAATGTTCGTTGAGAACGGTTCTGAATTTTGAATGTTTATTGAGAACGATTCTGAATCTTGAATGTTCATTGAGAACGATTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACAGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACGGTTCCGAATCTTGAATGTTCATTGAGAACAGTTCCGAATCTTGAATGTTCATTGAGAACTGTTCCGAATCTTGAATGTTCATTGAGATTGTTGTGA

Protein sequence

MVLNLECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRLL

Homology

[Close]

BLAST of CmaCh11G016280 vs. TrEMBL
Match: A7S1D4_NEMVE (Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g100921 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.5e-14
Identity = 78/159 (49.06%), Postives = 93/159 (58.49%), Query Frame = 1


Query: 2   VLNLECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRT 61
           V N   +LRTV N    LRTV N   +LRTV N   +LRTV N    LRT+ N   +LRT
Sbjct: 277 VANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRT 336

Query: 62  IPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRT 121
           + N   +LRTV N   +LRTV N   +LRTV N   +LRTV N   SLRTV N   +LRT
Sbjct: 337 VANEMNALRTVANKMYALRTVANEMYALRTVANEMYALRTVANEMYSLRTVANEMYALRT 396

Query: 122 VPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLR 161
           V N   +LRTV N   +LRTV N   +LRTV N   +LR
Sbjct: 397 VANEMYALRTVANEMYALRTVANEMYALRTVANEMYALR 435

[Close]

BLAST of CmaCh11G016280 vs. TrEMBL
Match: A7T938_NEMVE (Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g224033 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 75/153 (49.02%), Postives = 91/153 (59.48%), Query Frame = 1


Query: 8   SLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPNLEC 67
           +LRTV N    LRTV N   +LRTV N   +LRTV N    LRT+ N   +LRT+ N   
Sbjct: 3   ALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMY 62

Query: 68  SLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLEC 127
           +LRTV N   +LRTV N   +LRTV N   +LRTV N   +LRTV N   +LRTV N   
Sbjct: 63  ALRTVANEMYALRTVANEMNALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMY 122

Query: 128 SLRTVPNLECSLRTVPNLECSLRTVPNLECSLR 161
           +LRTV N   +LRTV N   +LRTV N   +LR
Sbjct: 123 ALRTVANEMYALRTVANEMYALRTVANEMYALR 155

[Close]

BLAST of CmaCh11G016280 vs. TrEMBL
Match: L8YCN1_TUPCH (Cathepsin O OS=Tupaia chinensis GN=TREES_T100002224 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 1


Query: 7   CSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPNLE 66
           CS+RT     C +RT     CS+RT     CS+RT+  F C +RT+    CS+RT+    
Sbjct: 294 CSVRTSDVPACSVRTSDVPACSVRTSDVSACSVRTLDVFACSVRTLDVFACSVRTLDVFA 353

Query: 67  CSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLE 126
           CS+RT+    CS+RT+    CS+RT+    CS+RT+    CS+RT+    CS+RT+    
Sbjct: 354 CSVRTLDVFACSVRTLDVFACSVRTLDVFACSVRTLDVFACSVRTLDVFACSVRTLDVFA 413

Query: 127 CSLRTVPNLECSL 140
           CS+RT+    CS+
Sbjct: 414 CSVRTLDVFTCSV 426

[Close]

BLAST of CmaCh11G016280 vs. TrEMBL
Match: G3GWS8_CRIGR (Uncharacterized protein OS=Cricetulus griseus GN=I79_002209 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 56/155 (36.13%), Postives = 70/155 (45.16%), Query Frame = 1


Query: 5   LECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPN 64
           +EC L     +ECLL T   +EC L T   +EC L T   FECLL      EC L     
Sbjct: 21  IECLLYAAAMMECLLYTSTMIECLLYTAAMIECLLYTAAMFECLLYAAAMFECLLYAAAI 80

Query: 65  LECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPN 124
           +E  L     + C L     +EC L T   +EC L     +EC L T   +EC L     
Sbjct: 81  IERLLYAAALMACLLYAAAMIECLLYTAAMIECLLDAAAMIECLLYTAAMIECLLDAAAM 140

Query: 125 LECSLRTVPNLECSLRTVPNLECSLRTVPNLECSL 160
           +EC L T   +EC L     +EC L T   +EC L
Sbjct: 141 IECLLYTAAMIECLLDAAAMIECLLYTAAMIECLL 175

[Close]

BLAST of CmaCh11G016280 vs. TrEMBL
Match: V3ZD43_LOTGI (Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_135589 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-09
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1


Query: 5   LECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPN 64
           L C L+ +L L C+L+ +L L C L+ +L L C L+ +L   C+L+ +L L C L+ +  
Sbjct: 47  LSCVLQAMLVLSCVLQAMLVLSCVLQAMLVLSCVLQAMLVLSCVLQAMLVLSCVLQAMLV 106

Query: 65  LECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPN 124
           L C L+ +  L C L+ +  L C L+ +  L C L+ +  L C L+ +  L C L+ V  
Sbjct: 107 LSCFLQAMLVLYCVLQAMLVLSCVLQAMLVLSCVLQAMLVLSCVLQAMLVLSCVLQAVLV 166

Query: 125 LECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLR 161
           L C L+ +  L C L+ +  L C L+ +  L C L+
Sbjct: 167 LSCVLQAMLVLSCVLQAMLVLSCVLQAMLVLSCVLQ 202

[Close]

BLAST of CmaCh11G016280 vs. NCBI nr
Match: gi|156388123|ref|XP_001634551.1| (predicted protein [Nematostella vectensis])

HSP 1 Score: 85.5 bits (210), Expect = 9.3e-14
Identity = 78/159 (49.06%), Postives = 93/159 (58.49%), Query Frame = 1


Query: 2   VLNLECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRT 61
           V N   +LRTV N    LRTV N   +LRTV N   +LRTV N    LRT+ N   +LRT
Sbjct: 277 VANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRT 336

Query: 62  IPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRT 121
           + N   +LRTV N   +LRTV N   +LRTV N   +LRTV N   SLRTV N   +LRT
Sbjct: 337 VANEMNALRTVANKMYALRTVANEMYALRTVANEMYALRTVANEMYSLRTVANEMYALRT 396

Query: 122 VPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLR 161
           V N   +LRTV N   +LRTV N   +LRTV N   +LR
Sbjct: 397 VANEMYALRTVANEMYALRTVANEMYALRTVANEMYALR 435

[Close]

BLAST of CmaCh11G016280 vs. NCBI nr
Match: gi|156335475|ref|XP_001619595.1| (hypothetical protein NEMVEDRAFT_v1g224033 [Nematostella vectensis])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 75/153 (49.02%), Postives = 91/153 (59.48%), Query Frame = 1


Query: 8   SLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPNLEC 67
           +LRTV N    LRTV N   +LRTV N   +LRTV N    LRT+ N   +LRT+ N   
Sbjct: 3   ALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMY 62

Query: 68  SLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLEC 127
           +LRTV N   +LRTV N   +LRTV N   +LRTV N   +LRTV N   +LRTV N   
Sbjct: 63  ALRTVANEMYALRTVANEMNALRTVANEMYALRTVANEMYALRTVANEMYALRTVANEMY 122

Query: 128 SLRTVPNLECSLRTVPNLECSLRTVPNLECSLR 161
           +LRTV N   +LRTV N   +LRTV N   +LR
Sbjct: 123 ALRTVANEMYALRTVANEMYALRTVANEMYALR 155

[Close]

BLAST of CmaCh11G016280 vs. NCBI nr
Match: gi|564313117|ref|XP_006220825.1| (PREDICTED: mucin-22-like [Rattus norvegicus])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 42/153 (27.45%), Postives = 86/153 (56.21%), Query Frame = 1


Query: 6   ECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPNL 65
           EC+  ++   EC   ++   EC+  ++   EC+  ++   EC   ++   EC+  ++P  
Sbjct: 116 ECTTVSLPRCECTTVSLPRCECTTISLPRCECTTVSLPRCECTTVSLPRCECTTVSLPRC 175

Query: 66  ECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNL 125
           EC+  ++P  EC+  ++P  EC+  ++P  EC+  ++P  EC+  ++P  EC+  ++P  
Sbjct: 176 ECTTVSLPRCECTTISLPRCECTTVSLPRCECTTVSLPRCECTTVSLPRCECTTISLPRC 235

Query: 126 ECSLRTVPNLECSLRTVPNLECSLRTVPNLECS 159
           EC+  ++P  EC+  ++P  EC+  ++P  EC+
Sbjct: 236 ECTTISLPRCECTTISLPRCECTTVSLPRCECT 268

[Close]

BLAST of CmaCh11G016280 vs. NCBI nr
Match: gi|444519298|gb|ELV12725.1| (Cathepsin O [Tupaia chinensis])

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 1


Query: 7   CSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLRTIPNLE 66
           CS+RT     C +RT     CS+RT     CS+RT+  F C +RT+    CS+RT+    
Sbjct: 294 CSVRTSDVPACSVRTSDVPACSVRTSDVSACSVRTLDVFACSVRTLDVFACSVRTLDVFA 353

Query: 67  CSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLE 126
           CS+RT+    CS+RT+    CS+RT+    CS+RT+    CS+RT+    CS+RT+    
Sbjct: 354 CSVRTLDVFACSVRTLDVFACSVRTLDVFACSVRTLDVFACSVRTLDVFACSVRTLDVFA 413

Query: 127 CSLRTVPNLECSL 140
           CS+RT+    CS+
Sbjct: 414 CSVRTLDVFTCSV 426

[Close]

BLAST of CmaCh11G016280 vs. NCBI nr
Match: gi|929316277|ref|XP_014035954.1| (PREDICTED: uncharacterized protein LOC106589998 [Salmo salar])

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 1


Query: 1   MVLNLECSLRTVLNLECLLRTVLNLECSLRTVLNLECSLRTVLNFECLLRTILNLECSLR 60
           ++LN +  LRT+LN +   RT+LN +  LRT+LN +  LRT+LN +  LRT+LN +  LR
Sbjct: 138 ILLNGDSRLRTLLNGDSRPRTLLNGDSRLRTLLNGDSRLRTLLNGDSRLRTLLNGDSRLR 197

Query: 61  TIPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLR 120
           T+ N +  LRT+ N +   RT+ N +   RT  N +  LRT+ N +   RT+ N +  LR
Sbjct: 198 TLLNGDSRLRTLLNGDSRPRTLLNGDSRPRTFLNGDSMLRTLLNGDSRPRTLLNGDSRLR 257

Query: 121 TVPNLECSLRTVPNLECSLRTVPNLECSLRTVPNLECSLRLL 163
           T+ N +  LRT+ N +  LRT+ N +  LRT+ N +  LR+L
Sbjct: 258 TLQNGDSRLRTLQNGDSRLRTLLNGDSRLRTLLNGDSRLRIL 299

The following BLAST results are available for this feature:

BLAST of CmaCh11G016280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G016280 vs. TrEMBL


Match Name	E-value	Identity	Description
A7S1D4_NEMVE	6.5e-14	49.06	Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g100921 PE=4 SV=1	[more]
A7T938_NEMVE	1.1e-13	49.02	Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g224033 PE=4 SV=1	[more]
L8YCN1_TUPCH	1.0e-11	39.85	Cathepsin O OS=Tupaia chinensis GN=TREES_T100002224 PE=3 SV=1	[more]
G3GWS8_CRIGR	3.9e-11	36.13	Uncharacterized protein OS=Cricetulus griseus GN=I79_002209 PE=4 SV=1	[more]
V3ZD43_LOTGI	6.3e-09	33.97	Uncharacterized protein OS=Lottia gigantea GN=LOTGIDRAFT_135589 PE=4 SV=1	[more]

BLAST of CmaCh11G016280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G016280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|156388123\|ref\|XP_001634551.1\|	9.3e-14	49.06	predicted protein [Nematostella vectensis]	[more]
gi\|156335475\|ref\|XP_001619595.1\|	1.6e-13	49.02	hypothetical protein NEMVEDRAFT_v1g224033 [Nematostella vectensis]	[more]
gi\|564313117\|ref\|XP_006220825.1\|	3.0e-12	27.45	PREDICTED: mucin-22-like [Rattus norvegicus]	[more]
gi\|444519298\|gb\|ELV12725.1\|	1.5e-11	39.85	Cathepsin O [Tupaia chinensis]	[more]
gi\|929316277\|ref\|XP_014035954.1\|	4.3e-11	40.74	PREDICTED: uncharacterized protein LOC106589998 [Salmo salar]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G016280.1	CmaCh11G016280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G016280	Cucumber (Chinese Long) v3	cmacucB0161
CmaCh11G016280	Cucumber (Chinese Long) v3	cmacucB0171
CmaCh11G016280	Watermelon (97103) v2	cmawmbB149
CmaCh11G016280	Watermelon (97103) v2	cmawmbB157
CmaCh11G016280	Wax gourd	cmawgoB0116
CmaCh11G016280	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh11G016280	Cucurbita maxima (Rimu)	cmacmaB153
CmaCh11G016280	Cucumber (Gy14) v1	cgycmaB0522
CmaCh11G016280	Cucumber (Gy14) v1	cgycmaB0947
CmaCh11G016280	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G016280	Cucurbita moschata (Rifu)	cmacmoB147
CmaCh11G016280	Wild cucumber (PI 183967)	cmacpiB137
CmaCh11G016280	Wild cucumber (PI 183967)	cmacpiB143
CmaCh11G016280	Cucumber (Chinese Long) v2	cmacuB140
CmaCh11G016280	Cucumber (Chinese Long) v2	cmacuB146
CmaCh11G016280	Melon (DHL92) v3.5.1	cmameB098
CmaCh11G016280	Watermelon (Charleston Gray)	cmawcgB075
CmaCh11G016280	Watermelon (Charleston Gray)	cmawcgB083
CmaCh11G016280	Watermelon (97103) v1	cmawmB081
CmaCh11G016280	Cucurbita pepo (Zucchini)	cmacpeB120
CmaCh11G016280	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G016280	Bottle gourd (USVL1VR-Ls)	cmalsiB117
CmaCh11G016280	Cucumber (Gy14) v2	cgybcmaB708
CmaCh11G016280	Cucumber (Gy14) v2	cgybcmaB895
CmaCh11G016280	Melon (DHL92) v3.6.1	cmamedB106
CmaCh11G016280	Silver-seed gourd	carcmaB0915
CmaCh11G016280	Silver-seed gourd	carcmaB1028