CmaCh11G016260 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G016260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transcription cofactor, putative
Location	Cma_Chr11 : 10701901 .. 10704738 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGAATAATTGGAGGCCTGCTCAAGGTGGAGAACCCAGAGTCGATGCCGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAAGTATCAACAAAATGTATGATTTCTTGCTTCTTTCATTCATATTTGAGAAATGTGTTTGAGCTTTTGTAACCTTTTGTTTCATAGTTCGCTGCTTAGACCAGTTATTATGGGATGGTTTTGTGAATTAAGTTATGAACGGAAAAACTTTGGAAGTATAGAATCATCCTCGACCTTATTCTACCATTTCTTAGATTTGTGTATAACTGATGGATGCGAACTGATTCCAAAACCTAGTTCTATAATATTATCTCCTTCATTTTTCCATCTCTGGTTCGAAGATATGGTAGGTTAGGTTTTGTGGAGGCGGTTCCTATTTGTTTCTTCAGGTATTAGCCCCTTCTTTGAACATAAGAAGTATAAGTTATTTGAAGTAGTATGGATCCTATTGAATTTTCCTCATCTATTCTAAAGTCCATTCCTTCAAAATGCTAATTGTGAGATCCCACATGGGTGGAAGAGCGGAACAAAACATTTCTCATTAAGGTGTGGAAACATCTCCCTAGTAGACGTGTTTTAAAATTGCGAGACTGACGACGATAAGTATCGGGCCAAAGCAGACAATATCTGTTAGCGGTGGGCTTAGGATGTTACAAATGGTATCAGAATCAAACACTAGGAGGTATGCCAGCGAGGGCGCTAGGCCCTCAAGGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTCCTATAAGGGTGTAGAAACCTCTCCCTAGAAGACACGCTTTAAAACCGTGAGGCTGACGACAATATGTAACGGGCCAAAGCAGACAATATCTACTAGTGGTGAGCTTGGGCTATTACAAATGGTATCGGAGTTAGACACTTGGCGGTGTGCTAGCGAGGACTCTAGGCCCTCAAGGGGGGTGGATTGTGAGATCCTACATTGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTAGAAATCTCTCCCTAGAAGACACGCTTTAAAATCGTGAGGCTGACGACAATACGTAACGGGCCAAAGCGGACAATATCTACTAGCGGTGAGCTTGGGTTGTTACAAATGGTATCAAAGTCAGACACTGGCCGGTGTGCCAGCGAGGACTCTAGGCCCTTAAGGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAGACATTCCTTTTAAAGGTGTAGAAACCTCTCCCTAGAAGACACGTTTTAAAACCATGAGGCTGATGACAATACGTAACGGGCCAAAGCGGACAATATCTACTAGTGGTGAGCTTGAACTGTTACAAATGGTATCAAAGTCAGACACTGGACGGTGTGCCAGCAAGGGATCTAGGCACTCAAGGGGGGTGGATTGTGAGATCCCACGTTGGTTGGAGAGGGGAATGAAACATTCCTTAGAAGGGTGTAGAAACCTCTCCCTAGAAGACACGCTTTACAACCGTGAGGCTGATGACAATACATAACGGGCCTAAGCGGACAATATCTACTAGCGGTGAGCTTGGGCTTGTTACAAATAGTATCAGAGTCAGACACTGGCCGGGGTGCTAGTGAGGTTTCTAGGCCCTCAAGGTGGGTGAATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAAACATTCTTCCTAAGGGTGTGGAGACCTCTCCCTAGTAGACGTGTTTTAAAACCTTAAGGCGGGGAGCGATAGGAGGCCAAAGCAGAGTCAAGAGACTGGGCGGTGTGCCAGCAAGGACTCTAGGCCCTCAAGGGGGTGGAATGTGAGATCCCGCATTAGCTTGAGAGGGGAACGAAACGTTCCTCATAAGGGTGTAGAAACCTCTCCCTAGTAGACGCGTTTTAAAACAGCGAAACGTAACGGGCCAAAGTGAACAATATCTGCTAGCAGCGGGCTTAGGCTATTACACTAATATTTTGAATCATGAACGTGGATTACTGCGGTAGTTTTTCGTTCCTGAACAGCTTCCCATGCTTTTGTGTTTAATAACCTTGTCAGCCATCATCTTTTCCATTTTTATGTAGAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGCAAGGTTCGAGGAAAAGATTTATACTGCCGCTACCAGTGAGGTACTTCCTGCTCACTTGTTATAGTTCTCAAGGATTTTAAGAACAAACATTATCTTATTTATGTTTAGCCCGTTTGCTATAACAATAAGATCCCAATTTCATTGGGTTCCTAAGATTTAGTTCTGTACTGAAAGATACTTTTGTATAAGAACTTGTTCATAAAGCCCTGATTTATTATGCTATGTAGTGTTGCACTAAATAAATACCAATTATATTTTGAACCTCTGATTTCAGTCAGAGTACCTCAGGAAAATATATGTGAAGATGCTTATTATGGAACCCAACTTTGAGACGACCACTGCATTACCATCAATGTCTGGGCCTATGACTTCCAATCAACCTTAGAAACGCCTGCAATTACTCTCCCACAACATCCAAAATAACACTGCTTCTTCTAATGTATTTACCAACTCTCAGAGGCCAATTATTGGCTAATAAGGTGAATGAGTCTACTGGTAGTACTGGTAGAACGTGTTAGCGTTGGAATGAGGTATTATATGATAATTGAAACTGTTCTGAATCTTGAATGTTCGTGAGATTGTTTTGAATGAAATATTATATGATAATTGAATTAATCTTGAATGTTCATGATATTGGTTTGAATGAAATATTATATGATAACTGAAA

mRNA sequence

ATGGATTCGAATAATTGGAGGCCTGCTCAAGGTGGAGAACCCAGAGTCGATGCCGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAAGTATCAACAAAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGCAAGGTTCGAGGAAAAGATTTATACTGCCGCTACCAGTGAGTCAGAGTACCTCAGGAAAATATATGTGAAGATGCTTATTATGGAACCCAACTTTGAGACGACCACTGCATTACCATCAATGTCTGGGCCTATGACTTCCAATCAACCTTAGAAACGCCTGCAATTACTCTCCCACAACATCCAAAATAACACTGCTTCTTCTAATGTATTTACCAACTCTCAGAGGCCAATTATTGGCTAATAAGGTGAATGAGTCTACTGGTAGTACTGGTAGAACGTGTTAGCGTTGGAATGAGGTATTATATGATAATTGAAACTGTTCTGAATCTTGAATGTTCGTGAGATTGTTTTGAATGAAATATTATATGATAATTGAATTAATCTTGAATGTTCATGATATTGGTTTGAATGAAATATTATATGATAACTGAAA

Coding sequence (CDS)

ATGGATTCGAATAATTGGAGGCCTGCTCAAGGTGGAGAACCCAGAGTCGATGCCGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAAGTATCAACAAAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGCAAGGTTCGAGGAAAAGATTTATACTGCCGCTACCAGTGAGTCAGAGTACCTCAGGAAAATATATGTGAAGATGCTTATTATGGAACCCAACTTTGAGACGACCACTGCATTACCATCAATGTCTGGGCCTATGACTTCCAATCAACCTTAG

Protein sequence

MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIAARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTALPSMSGPMTSNQP

Homology

[Close]

BLAST of CmaCh11G016260 vs. Swiss-Prot
Match: MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.9e-28
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1


Query: 1  MDSNNWRPA-QGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKI 60
          MD+NNWRP+   GEP +D GDWR+QL PDSR + +NKIMETLK+ LP SGPEG++ELR+I
Sbjct: 1  MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61 AARFEEKIYTAATSESEYLRKIYVKMLIME 90
          AARFEEKI++ A ++++YLRKI +KML ME
Sbjct: 61 AARFEEKIFSGALNQTDYLRKISMKMLTME 90

[Close]

BLAST of CmaCh11G016260 vs. TrEMBL
Match: G7IM96_MEDTR (Transcription cofactor, putative OS=Medicago truncatula GN=MTR_2g104400 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 74/113 (65.49%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP QG EP +D  DWR QLQP+SR + +NKIM+TLKR LPVSG EGL ELRKIA
Sbjct: 1   MDTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTA---LPSMSGPMTSNQP 111
            RFEEKIYTAATS+S+YLRKI +KML ME   + T +    P+  GP  SNQP
Sbjct: 61  QRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTISNNIPPNQVGP--SNQP 111

[Close]

BLAST of CmaCh11G016260 vs. TrEMBL
Match: M5WIJ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007709mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-30
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP Q GEP +DAGDWRSQLQPDSR + +NKI +TLKR LP SG EGL E+RKIA
Sbjct: 88  MDNNNWRPPQVGEPPIDAGDWRSQLQPDSRQRIVNKITDTLKRHLPFSGQEGLQEIRKIA 147

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTALPSMS 103
            RFEEKI+TAATS+S+YLRKI +KML ME N +   A  S S
Sbjct: 148 VRFEEKIHTAATSQSDYLRKISLKMLSMETNSQHRMANSSQS 189

[Close]

BLAST of CmaCh11G016260 vs. TrEMBL
Match: M5VYW2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007709mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-30
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP Q GEP +DAGDWRSQLQPDSR + +NKI +TLKR LP SG EGL E+RKIA
Sbjct: 88  MDNNNWRPPQVGEPPIDAGDWRSQLQPDSRQRIVNKITDTLKRHLPFSGQEGLQEIRKIA 147

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTALPSMS 103
            RFEEKI+TAATS+S+YLRKI +KML ME N +   A  S S
Sbjct: 148 VRFEEKIHTAATSQSDYLRKISLKMLSMETNSQHRMANSSQS 189

[Close]

BLAST of CmaCh11G016260 vs. TrEMBL
Match: W9RBX9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025703 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-30
Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP QGGEP +DA DWR+QLQPDSR + +NKIM+TLK+ LP SG EGL EL+KIA
Sbjct: 1   MDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTALPSMSGPMTSN 109
            RFEEKIYTAATS+S+YLRKI +KML ME   + +      + P+++N
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNSIPNSLPTNPVSNN 108

[Close]

BLAST of CmaCh11G016260 vs. TrEMBL
Match: F6I6N7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02320 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-30
Identity = 74/112 (66.07%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRPAQ  EP +D GDWR+QL PDSR + +NKIM+TLKR LPVSG EGL ELRKIA
Sbjct: 1   MDTNNWRPAQA-EPAMDGGDWRTQLPPDSRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETT--TALPSMSGPMTSNQP 111
            RFEEKIYTAATS+S+YLRKI +KML ME   +T   + LPS S   + N P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTAMPSNLPSNSAGNSKNPP 111

[Close]

BLAST of CmaCh11G016260 vs. TAIR10
Match: AT1G15780.1 (AT1G15780.1 unknown protein)

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-29
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1


Query: 1  MDSNNWRPA-QGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKI 60
          MD+NNWRP+   GEP +D GDWR+QL PDSR + +NKIMETLK+ LP SGPEG++ELR+I
Sbjct: 1  MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61 AARFEEKIYTAATSESEYLRKIYVKMLIME 90
          AARFEEKI++ A ++++YLRKI +KML ME
Sbjct: 61 AARFEEKIFSGALNQTDYLRKISMKMLTME 90

[Close]

BLAST of CmaCh11G016260 vs. TAIR10
Match: AT1G15790.1 (AT1G15790.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.2e-16
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 19 GDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIAARFEEKIYTAATSESEYL 78
          GDWR+Q    SR + +NKIMET  + LP   PEG +ELRKIA RFEEK++  A++++EYL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79 RKIYVKMLIME 90
          R+I +KML ME
Sbjct: 65 RQICMKMLNME 75

[Close]

BLAST of CmaCh11G016260 vs. NCBI nr
Match: gi|659110481|ref|XP_008455247.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-35
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP QGGEP ++AGDWRSQLQPDSRH+ +NKIMETLKR LPVSG EGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTALPSMSGPMT-SNQP 111
            RFEEKI+TAATS+S+YLRKI +KML ME   + T   P  S PM  SN+P
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPMVPSNKP 111

[Close]

BLAST of CmaCh11G016260 vs. NCBI nr
Match: gi|764563459|ref|XP_011461616.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP  GGEP +DAGDWRSQLQ DSR + +NKIM+TLKR LP SG EGL EL+KIA
Sbjct: 1   MDTNNWRPPPGGEPAMDAGDWRSQLQADSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETT--TALPSMSGPMTSNQP 111
            RFEEKIYTAATS+S+YLRKI +KML ME   + T   +LPS S    SN+P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNTMGNSLPSNSAG-NSNRP 111

[Close]

BLAST of CmaCh11G016260 vs. NCBI nr
Match: gi|764563456|ref|XP_011461615.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP  GGEP +DAGDWRSQLQ DSR + +NKIM+TLKR LP SG EGL EL+KIA
Sbjct: 1   MDTNNWRPPPGGEPAMDAGDWRSQLQADSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETT--TALPSMSGPMTSNQP 111
            RFEEKIYTAATS+S+YLRKI +KML ME   + T   +LPS S    SN+P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNTMGNSLPSNSAG-NSNRP 111

[Close]

BLAST of CmaCh11G016260 vs. NCBI nr
Match: gi|357455349|ref|XP_003597955.1| (transcription cofactor, putative [Medicago truncatula])

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-30
Identity = 74/113 (65.49%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP QG EP +D  DWR QLQP+SR + +NKIM+TLKR LPVSG EGL ELRKIA
Sbjct: 1   MDTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTA---LPSMSGPMTSNQP 111
            RFEEKIYTAATS+S+YLRKI +KML ME   + T +    P+  GP  SNQP
Sbjct: 61  QRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTISNNIPPNQVGP--SNQP 111

[Close]

BLAST of CmaCh11G016260 vs. NCBI nr
Match: gi|778724247|ref|XP_011658765.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-30
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 1


Query: 1   MDSNNWRPAQGGEPRVDAGDWRSQLQPDSRHQSINKIMETLKRILPVSGPEGLSELRKIA 60
           MD+NNWRP Q  EP ++  DWRSQLQPDSR + +NKIMETLKR LPVSG EGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  ARFEEKIYTAATSESEYLRKIYVKMLIMEPNFETTTALPSMSGPMTSN 109
            RFEEKI+TAATS+S+YLRKI +KML ME     T   P M  P+ SN
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTME-----TKTQPPMGNPLPSN 103

The following BLAST results are available for this feature:

BLAST of CmaCh11G016260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD15A_ARATH	5.9e-28	65.56	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of CmaCh11G016260 vs. TrEMBL


Match Name	E-value	Identity	Description
G7IM96_MEDTR	1.5e-30	65.49	Transcription cofactor, putative OS=Medicago truncatula GN=MTR_2g104400 PE=4 SV=...	[more]
M5WIJ4_PRUPE	3.4e-30	68.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007709mg PE=4 SV=1	[more]
M5VYW2_PRUPE	3.4e-30	68.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007709mg PE=4 SV=1	[more]
W9RBX9_9ROSA	5.7e-30	62.96	Uncharacterized protein OS=Morus notabilis GN=L484_025703 PE=4 SV=1	[more]
F6I6N7_VITVI	5.7e-30	66.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02320 PE=4 SV=...	[more]

BLAST of CmaCh11G016260 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15780.1	3.3e-29	65.56	unknown protein	[more]
AT1G15790.1	7.2e-16	56.34	unknown protein	[more]

BLAST of CmaCh11G016260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110481\|ref\|XP_008455247.1\|	2.2e-35	72.07	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [C...	[more]
gi\|764563459\|ref\|XP_011461616.1\|	1.3e-30	66.96	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [F...	[more]
gi\|764563456\|ref\|XP_011461615.1\|	1.3e-30	66.96	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [F...	[more]
gi\|357455349\|ref\|XP_003597955.1\|	2.2e-30	65.49	transcription cofactor, putative [Medicago truncatula]	[more]
gi\|778724247\|ref\|XP_011658765.1\|	2.8e-30	67.59	PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis sati...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003101	Coactivator CBP, KIX domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G016260.1	CmaCh11G016260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003101	Coactivator CBP, KIX domain	GENE3D	G3DSA:1.10.246.20		coord: 20..88 score: 4.
IPR003101	Coactivator CBP, KIX domain	PFAM	PF16987	KIX_2	coord: 19..93 score: 2.3
IPR003101	Coactivator CBP, KIX domain	unknown	SSF47040	Kix domain of CBP (creb binding protein)	coord: 19..88 score: 1.1
None	No IPR available	PANTHER	PTHR33137	FAMILY NOT NAMED	coord: 1..89 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G016260	Watermelon (97103) v2	cmawmbB149
CmaCh11G016260	Watermelon (97103) v2	cmawmbB157
CmaCh11G016260	Wax gourd	cmawgoB0116
CmaCh11G016260	Cucurbita maxima (Rimu)	cmacmaB149
CmaCh11G016260	Cucurbita maxima (Rimu)	cmacmaB153
CmaCh11G016260	Cucumber (Gy14) v1	cgycmaB0522
CmaCh11G016260	Cucumber (Gy14) v1	cgycmaB0947
CmaCh11G016260	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G016260	Cucurbita moschata (Rifu)	cmacmoB147
CmaCh11G016260	Wild cucumber (PI 183967)	cmacpiB137
CmaCh11G016260	Wild cucumber (PI 183967)	cmacpiB143
CmaCh11G016260	Cucumber (Chinese Long) v2	cmacuB140
CmaCh11G016260	Cucumber (Chinese Long) v2	cmacuB146
CmaCh11G016260	Melon (DHL92) v3.5.1	cmameB098
CmaCh11G016260	Watermelon (Charleston Gray)	cmawcgB075
CmaCh11G016260	Watermelon (Charleston Gray)	cmawcgB083
CmaCh11G016260	Watermelon (97103) v1	cmawmB081
CmaCh11G016260	Cucurbita pepo (Zucchini)	cmacpeB120
CmaCh11G016260	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G016260	Bottle gourd (USVL1VR-Ls)	cmalsiB117
CmaCh11G016260	Cucumber (Gy14) v2	cgybcmaB708
CmaCh11G016260	Cucumber (Gy14) v2	cgybcmaB895
CmaCh11G016260	Melon (DHL92) v3.6.1	cmamedB106
CmaCh11G016260	Silver-seed gourd	carcmaB0915
CmaCh11G016260	Silver-seed gourd	carcmaB1028
CmaCh11G016260	Cucumber (Chinese Long) v3	cmacucB0161
CmaCh11G016260	Cucumber (Chinese Long) v3	cmacucB0171