CmaCh11G015320 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G015320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr11 : 9999946 .. 10000344 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGTTTCGAGATGCTGGTCGTTATATCAACCTGTCTAATATTTATGCTGTAGCTGGTCAGTGGGACAATGTTTCAAAGATCAAGAAGGTGATGAGGGAGCGAGGGGTTAGTAAGGTCCCAGCCTATAGTTGGGTTGAAATCAAACATCAGACTCATGTATTCTCAGCGACTGATACACATCCCCGGATGAAGAAGATTTTGAGGAAGATTGATGCATTGACGATGCAGATGGATAAGAAAGGATATAAACCAGACATAACTTGGGCCCTTCATGACATGGATAAGGATATCAACATTGAGTTTCTTTAATACCGCAGCAGATGCTTCTCAATTGCATTTGCTCTACTCGACACACCAGACGGGTCACCAATAGTTTTAATGAAAAATTTGTGA

mRNA sequence

ATGGAAGAGTTTCGAGATGCTGGTCGTTATATCAACCTGTCTAATATTTATGCTGTAGCTGGTCAGTGGGACAATGTTTCAAAGATCAAGAAGGTGATGAGGGAGCGAGGGGTTAGTAAGGTCCCAGCCTATAGTTGGGTTGAAATCAAACATCAGACTCATGTATTCTCAGCGACTGATACACATCCCCGGATGAAGAAGATTTTGAGGAAGATTGATGCATTGACGATGCAGATGGATAAGAAAGGATATAAACCAGACATAACTTGGGCCCTTCATGACATGGATAAGGATATCAACATTGAATGCTTCTCAATTGCATTTGCTCTACTCGACACACCAGACGGGTCACCAATAGTTTTAATGAAAAATTTGTGA

Coding sequence (CDS)

ATGGAAGAGTTTCGAGATGCTGGTCGTTATATCAACCTGTCTAATATTTATGCTGTAGCTGGTCAGTGGGACAATGTTTCAAAGATCAAGAAGGTGATGAGGGAGCGAGGGGTTAGTAAGGTCCCAGCCTATAGTTGGGTTGAAATCAAACATCAGACTCATGTATTCTCAGCGACTGATACACATCCCCGGATGAAGAAGATTTTGAGGAAGATTGATGCATTGACGATGCAGATGGATAAGAAAGGATATAAACCAGACATAACTTGGGCCCTTCATGACATGGATAAGGATATCAACATTGAATGCTTCTCAATTGCATTTGCTCTACTCGACACACCAGACGGGTCACCAATAGTTTTAATGAAAAATTTGTGA

Protein sequence

MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATDTHPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIECFSIAFALLDTPDGSPIVLMKNL
Homology
[Close]
BLAST of CmaCh11G015320 vs. Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-36
Identity = 69/133 (51.88%), Postives = 98/133 (73.68%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME+ RDA  Y+++SNIYA AG+W+ V  +KK MRERG+ KVPAYSWVE+ H+ HVFS+ D
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            THP   +I+RKI+ LT +++++GYKPD +  + D+D+ + IE         ++AFAL+ 
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769

Query: 121 TPDGSPIVLMKNL 126
           TP+G PIV+MKNL
Sbjct: 770 TPEGCPIVVMKNL 782

[Close]
BLAST of CmaCh11G015320 vs. Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 1 

Query: 6   DAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD-THPR 65
           D+  Y+ LSN+YA +G W   +K++K+M ER V K P YSW+E+K++T+ F A D +HP 
Sbjct: 697 DSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPL 756

Query: 66  MKKILRKIDALTMQMDKKGYKPDITWALHDMDKD-------INIECFSIAFALLDTPDGS 125
             +I  K++ L+ ++   GY+PD ++ L D+D +        + E  +IAF L+ TP GS
Sbjct: 757 KDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGS 816

[Close]
BLAST of CmaCh11G015320 vs. Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-21
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1 

Query: 6   DAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATDT-HPR 65
           D+G Y+ LSNI+A + +W+ V+K++ +M  RGV K P  SW+ I++QTHVF A D  HP 
Sbjct: 540 DSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPE 599

Query: 66  MKKILRKIDALTMQMDKKGYKPDITWALHDMDKD-------INIECFSIAFALLDTPDGS 125
           +  I  K+  +  ++   GY PD+  A HD+D++        + E  ++A+ L+ TP+ S
Sbjct: 600 ITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKS 659

[Close]
BLAST of CmaCh11G015320 vs. Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-20
Identity = 47/131 (35.88%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 3   EFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD-T 62
           E  + G Y+ LSNIYA  G W  V  I+  M   G+ K P  SW+++K++ +   A D +
Sbjct: 587 EPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKS 646

Query: 63  HPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDI-------NIECFSIAFALLDTP 122
           HP++ +I  K+D ++ +M K G++P++ +ALHD+++         + E  ++ F LL+TP
Sbjct: 647 HPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTP 706

Query: 123 DGSPIVLMKNL 126
           DG+P+ ++KNL
Sbjct: 707 DGTPLQVIKNL 717

[Close]
BLAST of CmaCh11G015320 vs. Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-20
Identity = 50/132 (37.88%), Postives = 84/132 (63.64%), Query Frame = 1 

Query: 3   EFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFS--ATD 62
           E  ++G YI LSN+YA  G+W +V++++K+M+ R V K P  SW E++++ H F+    +
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590

Query: 63  THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINI-------ECFSIAFALLDT 122
           +HP  + IL+ +D L   + + GY PD ++ALHD+D++  +       E  ++A+ALL  
Sbjct: 591 SHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650

Query: 123 PDGSPIVLMKNL 126
            +G PI +MKNL
Sbjct: 651 SEGIPIRVMKNL 662

[Close]
BLAST of CmaCh11G015320 vs. TrEMBL
Match: A0A0A0LBU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G560220 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.7e-47
Identity = 96/133 (72.18%), Postives = 112/133 (84.21%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME+ RDA  YIN+SNIYAVAGQWDNV+K+KK MR+RGV KVPAYSWVEIKHQTHVFSA D
Sbjct: 641 MEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSAND 700

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            +HP MKKILRKI+AL+ +M+KKGYKPD T ALHD+D+ I IE        F+IAFAL++
Sbjct: 701 KSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMN 760

Query: 121 TPDGSPIVLMKNL 126
           TPDGSPIV+MKNL
Sbjct: 761 TPDGSPIVVMKNL 773

[Close]
BLAST of CmaCh11G015320 vs. TrEMBL
Match: A0A0D2PXN3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G275900 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.4e-39
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME  RDA  Y+++SNIYA AGQWDNV K+KK MRERG+ KVPAYSWVEI+H+ HVFSA D
Sbjct: 643 MEVLRDAAAYVSMSNIYAAAGQWDNVGKVKKAMRERGIRKVPAYSWVEIRHKLHVFSAND 702

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
             HP+M++I +KI+ L+ QM+K+GYKPD + ALHD+D++I IE         +IAFAL+ 
Sbjct: 703 MLHPQMEEIWKKIEMLSKQMEKEGYKPDTSCALHDVDENIKIESLKYHSERLAIAFALIS 762

Query: 121 TPDGSPIVLMKNL 126
           TP+GSPI+++KNL
Sbjct: 763 TPEGSPILVIKNL 775

[Close]
BLAST of CmaCh11G015320 vs. TrEMBL
Match: A0A061ED81_THECC (Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_017341 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 81/133 (60.90%), Postives = 102/133 (76.69%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME  RDA  Y+++SNIYA AGQWDNV K+KK MRERG+ KVPAYSWVEI+H+ HVFSA D
Sbjct: 643 MEVLRDAAAYVSMSNIYAAAGQWDNVGKMKKAMRERGIRKVPAYSWVEIRHKVHVFSAND 702

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
             HP+ ++I +KID L+ QM+K+GYKPD   ALHD+D+ I IE         +IAFAL+ 
Sbjct: 703 MLHPQREEIRKKIDMLSEQMEKEGYKPDTGCALHDVDEKIKIESLKYHSERLAIAFALIS 762

Query: 121 TPDGSPIVLMKNL 126
           TP+GSPI++MKNL
Sbjct: 763 TPEGSPILVMKNL 775

[Close]
BLAST of CmaCh11G015320 vs. TrEMBL
Match: F6H432_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01170 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 78/133 (58.65%), Postives = 102/133 (76.69%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           MEE RDA  Y+N+SNIYA AGQW+NVSK+ K MR+RGV K+PAYSWVEIKH+TH+FSA D
Sbjct: 645 MEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSAND 704

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
             HP++++I +KID LT  M++ GYKPD + ALH+ D+   +E         +IAFAL+ 
Sbjct: 705 RCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALIS 764

Query: 121 TPDGSPIVLMKNL 126
           TP+GSPI++MKNL
Sbjct: 765 TPEGSPILVMKNL 777

[Close]
BLAST of CmaCh11G015320 vs. TrEMBL
Match: A0A0S3RVU2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G216700 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-38
Identity = 79/133 (59.40%), Postives = 103/133 (77.44%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           M+  RDA  Y++LSNIYA AG+W+NV K+KK MRERG+ KVPAYSWVEIK +THVFSA D
Sbjct: 636 MKILRDAAPYVSLSNIYAAAGEWENVGKVKKAMRERGIRKVPAYSWVEIKQKTHVFSAND 695

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            +HP+MK+I R +D L  QM+K+GYKPD + ALH++D++I +E         +IAFAL+ 
Sbjct: 696 MSHPQMKEITRMLDELEEQMEKQGYKPDSSCALHNVDEEIKVESLKYHSERIAIAFALIS 755

Query: 121 TPDGSPIVLMKNL 126
           TP GSPI++MKNL
Sbjct: 756 TPKGSPILVMKNL 768

[Close]
BLAST of CmaCh11G015320 vs. TAIR10
Match: AT3G02010.1 (AT3G02010.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 151.0 bits (380), Expect = 4.9e-37
Identity = 69/133 (51.88%), Postives = 98/133 (73.68%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME+ RDA  Y+++SNIYA AG+W+ V  +KK MRERG+ KVPAYSWVE+ H+ HVFS+ D
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            THP   +I+RKI+ LT +++++GYKPD +  + D+D+ + IE         ++AFAL+ 
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769

Query: 121 TPDGSPIVLMKNL 126
           TP+G PIV+MKNL
Sbjct: 770 TPEGCPIVVMKNL 782

[Close]
BLAST of CmaCh11G015320 vs. TAIR10
Match: AT2G27610.1 (AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 8.1e-24
Identity = 51/128 (39.84%), Postives = 83/128 (64.84%), Query Frame = 1 

Query: 6   DAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD-THPR 65
           D+  Y+ LSN+YA +G W   +K++K+M ER V K P YSW+E+K++T+ F A D +HP 
Sbjct: 697 DSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPL 756

Query: 66  MKKILRKIDALTMQMDKKGYKPDITWALHDMDKD-------INIECFSIAFALLDTPDGS 125
             +I  K++ L+ ++   GY+PD ++ L D+D +        + E  +IAF L+ TP GS
Sbjct: 757 KDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGS 816

[Close]
BLAST of CmaCh11G015320 vs. TAIR10
Match: AT5G39680.1 (AT5G39680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-22
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1 

Query: 6   DAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATDT-HPR 65
           D+G Y+ LSNI+A + +W+ V+K++ +M  RGV K P  SW+ I++QTHVF A D  HP 
Sbjct: 540 DSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPE 599

Query: 66  MKKILRKIDALTMQMDKKGYKPDITWALHDMDKD-------INIECFSIAFALLDTPDGS 125
           +  I  K+  +  ++   GY PD+  A HD+D++        + E  ++A+ L+ TP+ S
Sbjct: 600 ITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKS 659

[Close]
BLAST of CmaCh11G015320 vs. TAIR10
Match: AT3G61170.1 (AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-22
Identity = 51/131 (38.93%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 3   EFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD-T 62
           E  +A  Y+ LSN+Y+ AG+ D  + ++++M+ R +SK P  SWVE K + H F + D  
Sbjct: 594 EPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRR 653

Query: 63  HPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKD-------INIECFSIAFALLDTP 122
           HPRM +I  K+D + + + + GY  D+++ALHD+DK+        + E  ++AF LL  P
Sbjct: 654 HPRMVEIYSKVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVP 713

Query: 123 DGSPIVLMKNL 126
            G+PI ++KNL
Sbjct: 714 SGAPIRIIKNL 724

[Close]
BLAST of CmaCh11G015320 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-22
Identity = 47/131 (35.88%), Postives = 81/131 (61.83%), Query Frame = 1 

Query: 3   EFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD-T 62
           E  + G Y+ LSNIYA  G W  V  I+  M   G+ K P  SW+++K++ +   A D +
Sbjct: 587 EPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKS 646

Query: 63  HPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDI-------NIECFSIAFALLDTP 122
           HP++ +I  K+D ++ +M K G++P++ +ALHD+++         + E  ++ F LL+TP
Sbjct: 647 HPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTP 706

Query: 123 DGSPIVLMKNL 126
           DG+P+ ++KNL
Sbjct: 707 DGTPLQVIKNL 717

[Close]
BLAST of CmaCh11G015320 vs. NCBI nr
Match: gi|449460574|ref|XP_004148020.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 96/133 (72.18%), Postives = 112/133 (84.21%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME+ RDA  YIN+SNIYAVAGQWDNV+K+KK MR+RGV KVPAYSWVEIKHQTHVFSA D
Sbjct: 641 MEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSAND 700

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            +HP MKKILRKI+AL+ +M+KKGYKPD T ALHD+D+ I IE        F+IAFAL++
Sbjct: 701 KSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMN 760

Query: 121 TPDGSPIVLMKNL 126
           TPDGSPIV+MKNL
Sbjct: 761 TPDGSPIVVMKNL 773

[Close]
BLAST of CmaCh11G015320 vs. NCBI nr
Match: gi|659098453|ref|XP_008450146.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 7.1e-46
Identity = 96/133 (72.18%), Postives = 110/133 (82.71%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME+ RDA  YIN+SNIYAVAGQWDNV+K+KK MR+RGV KVPAYSWVEIKHQTHVFSA D
Sbjct: 641 MEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSAND 700

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            +HP+MKKILRKIDAL+ +M+KKGYKPD T ALHD D+ I IE         +IAFALL+
Sbjct: 701 KSHPQMKKILRKIDALSKEMEKKGYKPDTTCALHDEDEVIKIESLKYHSERLAIAFALLN 760

Query: 121 TPDGSPIVLMKNL 126
           TPDG PIV+MKNL
Sbjct: 761 TPDGLPIVVMKNL 773

[Close]
BLAST of CmaCh11G015320 vs. NCBI nr
Match: gi|502106834|ref|XP_004493071.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Cicer arietinum])

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-39
Identity = 78/133 (58.65%), Postives = 107/133 (80.45%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME  RDA  Y+++SNIYA AG+WDNV K+KK MRERGV KVPAYSWVEIKH+THVF+A D
Sbjct: 637 MEVLRDAAPYVSMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFAAND 696

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
            +HP+M++I+RK+D L  +M K+GYKPD++ +LH++D+++ +E         +IAFAL+ 
Sbjct: 697 KSHPQMREIMRKLDELEEKMVKQGYKPDLSCSLHNVDEEVKVESLKYHSERIAIAFALIS 756

Query: 121 TPDGSPIVLMKNL 126
           TP+GSPI++MKNL
Sbjct: 757 TPEGSPILVMKNL 769

[Close]
BLAST of CmaCh11G015320 vs. NCBI nr
Match: gi|823129153|ref|XP_012446550.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 isoform X1 [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 4.9e-39
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME  RDA  Y+++SNIYA AGQWDNV K+KK MRERG+ KVPAYSWVEI+H+ HVFSA D
Sbjct: 716 MEVLRDAAAYVSMSNIYAAAGQWDNVGKVKKAMRERGIRKVPAYSWVEIRHKLHVFSAND 775

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
             HP+M++I +KI+ L+ QM+K+GYKPD + ALHD+D++I IE         +IAFAL+ 
Sbjct: 776 MLHPQMEEIWKKIEMLSKQMEKEGYKPDTSCALHDVDENIKIESLKYHSERLAIAFALIS 835

Query: 121 TPDGSPIVLMKNL 126
           TP+GSPI+++KNL
Sbjct: 836 TPEGSPILVIKNL 848

[Close]
BLAST of CmaCh11G015320 vs. NCBI nr
Match: gi|823129155|ref|XP_012446558.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 isoform X2 [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 4.9e-39
Identity = 80/133 (60.15%), Postives = 105/133 (78.95%), Query Frame = 1 

Query: 1   MEEFRDAGRYINLSNIYAVAGQWDNVSKIKKVMRERGVSKVPAYSWVEIKHQTHVFSATD 60
           ME  RDA  Y+++SNIYA AGQWDNV K+KK MRERG+ KVPAYSWVEI+H+ HVFSA D
Sbjct: 643 MEVLRDAAAYVSMSNIYAAAGQWDNVGKVKKAMRERGIRKVPAYSWVEIRHKLHVFSAND 702

Query: 61  -THPRMKKILRKIDALTMQMDKKGYKPDITWALHDMDKDINIEC-------FSIAFALLD 120
             HP+M++I +KI+ L+ QM+K+GYKPD + ALHD+D++I IE         +IAFAL+ 
Sbjct: 703 MLHPQMEEIWKKIEMLSKQMEKEGYKPDTSCALHDVDENIKIESLKYHSERLAIAFALIS 762

Query: 121 TPDGSPIVLMKNL 126
           TP+GSPI+++KNL
Sbjct: 763 TPEGSPILVIKNL 775

The following BLAST results are available for this feature:
BLAST of CmaCh11G015320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP206_ARATH8.7e-3651.88Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis th... [more]
PP172_ARATH1.4e-2239.84Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN... [more]
PP406_ARATH3.6e-2137.50Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN... [more]
PPR53_ARATH1.0e-2035.88Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN... [more]
PPR25_ARATH1.0e-2037.88Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN... [more]
BLAST of CmaCh11G015320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBU3_CUCSA7.7e-4772.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G560220 PE=4 SV=1[more]
A0A0D2PXN3_GOSRA3.4e-3960.15Uncharacterized protein OS=Gossypium raimondii GN=B456_001G275900 PE=4 SV=1[more]
A0A061ED81_THECC1.3e-3860.90Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_017... [more]
F6H432_VITVI8.5e-3858.65Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01170 PE=4 SV=... [more]
A0A0S3RVU2_PHAAN8.5e-3859.40Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G216700 PE=... [more]
BLAST of CmaCh11G015320 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02010.14.9e-3751.88 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G27610.18.1e-2439.84 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G39680.12.0e-2237.50 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G61170.12.0e-2238.93 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G20230.15.8e-2235.88 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmaCh11G015320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460574|ref|XP_004148020.1|1.1e-4672.18PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Cucum... [more]
gi|659098453|ref|XP_008450146.1|7.1e-4672.18PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Cucum... [more]
gi|502106834|ref|XP_004493071.1|2.9e-3958.65PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Cicer... [more]
gi|823129153|ref|XP_012446550.1|4.9e-3960.15PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 isofor... [more]
gi|823129155|ref|XP_012446558.1|4.9e-3960.15PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 isofor... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G015320.1CmaCh11G015320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 8..47
score: 3.7
NoneNo IPR availablePANTHERPTHR24015:SF285SUBFAMILY NOT NAMEDcoord: 8..47
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G015320CmoCh14G007600Cucurbita moschata (Rifu)cmacmoB129
CmaCh11G015320Lsi07G015010Bottle gourd (USVL1VR-Ls)cmalsiB151
CmaCh11G015320Cp4.1LG04g06290Cucurbita pepo (Zucchini)cmacpeB154
CmaCh11G015320Cla97C05G095390Watermelon (97103) v2cmawmbB126
CmaCh11G015320BhiUN548G21Wax gourdcmawgoB0128
CmaCh11G015320CsGy3G023690Cucumber (Gy14) v2cgybcmaB298
CmaCh11G015320Carg09640Silver-seed gourdcarcmaB0605
CmaCh11G015320Carg15538Silver-seed gourdcarcmaB0520
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh11G015320CmaCh14G007450Cucurbita maxima (Rimu)cmacmaB131
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G015320Cucumber (Gy14) v2cgybcmaB045
CmaCh11G015320Melon (DHL92) v3.6.1cmamedB119
CmaCh11G015320Melon (DHL92) v3.6.1cmamedB149
CmaCh11G015320Silver-seed gourdcarcmaB0513
CmaCh11G015320Cucumber (Chinese Long) v3cmacucB0117
CmaCh11G015320Cucumber (Chinese Long) v3cmacucB0148
CmaCh11G015320Watermelon (97103) v2cmawmbB135
CmaCh11G015320Cucurbita moschata (Rifu)cmacmoB111
CmaCh11G015320Cucurbita moschata (Rifu)cmacmoB117
CmaCh11G015320Wild cucumber (PI 183967)cmacpiB128
CmaCh11G015320Cucumber (Chinese Long) v2cmacuB131
CmaCh11G015320Melon (DHL92) v3.5.1cmameB137
CmaCh11G015320Watermelon (Charleston Gray)cmawcgB120
CmaCh11G015320Watermelon (97103) v1cmawmB110
CmaCh11G015320Cucurbita pepo (Zucchini)cmacpeB130
CmaCh11G015320Cucurbita pepo (Zucchini)cmacpeB145
CmaCh11G015320Bottle gourd (USVL1VR-Ls)cmalsiB135