CmaCh11G013960 (gene) Cucurbita maxima (Rimu)

NameCmaCh11G013960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransmembrane protein, putative
LocationCma_Chr11 : 9194583 .. 9195518 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAATTACAGAAGCAGAACCACCGCAGATTCAATTCTCGATTCTCTCTCCCTCAATCCTCTGCCGTATCCTGTCCTCCTCCTCCTCGCCGTCGTCTTCATCTTCCTCGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCTGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCAGTACTCCTCATCATCCTCGCTCGATTCCTCTCCTCCGTCGATCCTAGCTTCTTTTCTTCCTCGCCGTGGGACCGCCGCCGCAGAACGCACCACCTCCCTGCCGAGGGAAGTTCGCCGTGGGGCGTCGCTGCGTTGATCGTGCTGCTGCTTGTTCTCGTGCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAGATACCTTATGTATATAGAAATGGCGTACGCGATCGCTCCTCTGCAGTGGAGCGCGTTGCGGTTGATTTGATTTCATAAAAGGTATGTTTCCGTTGATCTAACTTTTTGAAAAAGGAAATCCGTGTTTATATATACAGTGGATGTATGTTGTATTATTGGATGGAAATCTTATCAGTTGGCCTTGGTTTTTAGTGCTTGAATGAAGATGAAGATGAAGATGAAGAGGAACTGTTTTTGTTTATCAAATAAAAATAAATACTCGTAGATTTTCATTCCTGTAATTTGTGCATCACTTTGAAGCTATGAATAGAACAGATCACTTGTTTTCTTCACCATAGGCGCTTAGTTTCCTTGGAATTTAATTTGAATAATTTTCTTTTTAGAACAAACAAACATATATACACATTTGACGTTCGATCTCTTCTCTAATGTTGAATTCAAAAAACAAAAAGAAACAAATAATTAGATTACTTGTAACAGTGAGCATTGTGATTACTTTTGTATTTTTGTTTAATTTATTTTGTAGAAAAAAAACCTTCCTATTGA

mRNA sequence

ATGAGCAATTACAGAAGCAGAACCACCGCAGATTCAATTCTCGATTCTCTCTCCCTCAATCCTCTGCCGTATCCTGTCCTCCTCCTCCTCGCCGTCGTCTTCATCTTCCTCGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCTGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCAGTACTCCTCATCATCCTCGCTCGATTCCTCTCCTCCGTCGATCCTAGCTTCTTTTCTTCCTCGCCGTGGGACCGCCGCCGCAGAACGCACCACCTCCCTGCCGAGGGAAGTTCGCCGTGGGGCGTCGCTGCGTTGATCGTGCTGCTGCTTGTTCTCGTGCAGTTCCAGTCCTCGTTCCAAAAAAAACCTTCCTATTGA

Coding sequence (CDS)

ATGAGCAATTACAGAAGCAGAACCACCGCAGATTCAATTCTCGATTCTCTCTCCCTCAATCCTCTGCCGTATCCTGTCCTCCTCCTCCTCGCCGTCGTCTTCATCTTCCTCGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCTGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCAGTACTCCTCATCATCCTCGCTCGATTCCTCTCCTCCGTCGATCCTAGCTTCTTTTCTTCCTCGCCGTGGGACCGCCGCCGCAGAACGCACCACCTCCCTGCCGAGGGAAGTTCGCCGTGGGGCGTCGCTGCGTTGATCGTGCTGCTGCTTGTTCTCGTGCAGTTCCAGTCCTCGTTCCAAAAAAAACCTTCCTATTGA

Protein sequence

MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFATPVLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSFQKKPSY
BLAST of CmaCh11G013960 vs. TrEMBL
Match: A0A0A0K4L6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009710 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-55
Identity = 108/125 (86.40%), Postives = 120/125 (96.00%), Query Frame = 1

Query: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60
           M++YR+RTTADSILDSLSLNP PYPVLLLLAVV IFLGASWWLSYESAVEAAED INWIL
Sbjct: 26  MTSYRNRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWIL 85

Query: 61  FATPVLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120
           FATPVLLI+L RFLSS+DP+FFSSSPWDRRRRTHH+PAEG+SPWGVAA I+LLLVL+QFQ
Sbjct: 86  FATPVLLILLVRFLSSLDPTFFSSSPWDRRRRTHHIPAEGTSPWGVAAFILLLLVLLQFQ 145

Query: 121 SSFQK 126
           SSF++
Sbjct: 146 SSFRE 150

BLAST of CmaCh11G013960 vs. TrEMBL
Match: W9QNH7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.9e-39
Identity = 78/123 (63.41%), Postives = 100/123 (81.30%), Query Frame = 1

Query: 4   YRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFAT 63
           Y  R+T+ SIL+  SLNPLPYPVLL++AV FIFLG  W+ S+E  VE+AE+QINW+LF  
Sbjct: 3   YGKRSTSTSILEGFSLNPLPYPVLLIMAVTFIFLGTKWYFSFEEVVESAEEQINWVLFVV 62

Query: 64  PVLLIILARFLSSVD--PSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQS 123
           P+LLI++ R+LSS++   S F  SPW+RRRRTHH P+EGSSPWGVAA IVLLL+L+Q+QS
Sbjct: 63  PILLILIVRWLSSMEDSDSLFGMSPWERRRRTHHRPSEGSSPWGVAAFIVLLLILLQYQS 122

Query: 124 SFQ 125
            F+
Sbjct: 123 IFR 125

BLAST of CmaCh11G013960 vs. TrEMBL
Match: A0A0B2RN13_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_013695 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-38
Identity = 78/120 (65.00%), Postives = 102/120 (85.00%), Query Frame = 1

Query: 7   RTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFATPVL 66
           R+ A S+LD  SLNP+PYPVLL+L+++ +FLG SW+LSYE  VEAAE+Q+ W+L ATPV+
Sbjct: 5   RSRASSVLDGFSLNPVPYPVLLILSLILLFLGISWYLSYEEVVEAAEEQLGWMLLATPVV 64

Query: 67  LIILARFLSSVDPS---FFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSF 124
           LI++ R+LSSVD S   FF+SSPW+RRRRTHH P+EGSSPWGVAALI+L+LVL+ + S+F
Sbjct: 65  LILVVRWLSSVDTSEWFFFNSSPWERRRRTHHFPSEGSSPWGVAALILLVLVLLHYHSTF 124

BLAST of CmaCh11G013960 vs. TrEMBL
Match: I1JSF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G005500 PE=4 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-38
Identity = 78/120 (65.00%), Postives = 102/120 (85.00%), Query Frame = 1

Query: 7   RTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFATPVL 66
           R+ A S+LD  SLNP+PYPVLL+L+++ +FLG SW+LSYE  VEAAE+Q+ W+L ATPV+
Sbjct: 5   RSRASSVLDGFSLNPVPYPVLLILSLILLFLGISWYLSYEEVVEAAEEQLGWMLLATPVV 64

Query: 67  LIILARFLSSVDPS---FFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSF 124
           LI++ R+LSSVD S   FF+SSPW+RRRRTHH P+EGSSPWGVAALI+L+LVL+ + S+F
Sbjct: 65  LILVVRWLSSVDTSEWFFFNSSPWERRRRTHHFPSEGSSPWGVAALILLVLVLLHYHSTF 124

BLAST of CmaCh11G013960 vs. TrEMBL
Match: A0A0D2TWF1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G033700 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-38
Identity = 83/127 (65.35%), Postives = 106/127 (83.46%), Query Frame = 1

Query: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60
           M+ YR     DSILDS SL+PLPYPVLL+LAV  IFLG SW+++YES +E AE+Q++W+L
Sbjct: 1   MAYYRR---GDSILDSFSLSPLPYPVLLILAVTSIFLGMSWYVNYESVLETAEEQLSWVL 60

Query: 61  FATPVLLIILARFLSSVDPS--FFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQ 120
           FATPV+LI+LAR++SS+D S   F SSPW+RRR+THH P+EGSSPW VAA IVLLL+LVQ
Sbjct: 61  FATPVVLILLARWVSSMDTSDMLFGSSPWERRRQTHHRPSEGSSPWIVAAFIVLLLILVQ 120

Query: 121 FQSSFQK 126
           +QS F++
Sbjct: 121 YQSVFRE 124

BLAST of CmaCh11G013960 vs. TAIR10
Match: AT2G21180.1 (AT2G21180.1 unknown protein)

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-27
Identity = 70/121 (57.85%), Postives = 86/121 (71.07%), Query Frame = 1

Query: 12  SILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFATPVLLIILA 71
           SILDS SL+PLPYPVLL+LAV  +FL +SW+ S E A E+AE+QIN+ L   P+ LI+L 
Sbjct: 9   SILDSFSLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLV 68

Query: 72  RFLSSVDP-----SFFSSSPWDRRRRTHHLPAE----GSSPWGVAALIVLLLVLVQFQSS 124
           R+LSS++        FSSS    RR T+  P      GSSPWGVAALIVLLLVL+Q+QSS
Sbjct: 69  RWLSSMENPDALLGMFSSS----RRTTYVSPGAGGDGGSSPWGVAALIVLLLVLLQYQSS 125

BLAST of CmaCh11G013960 vs. TAIR10
Match: AT5G19875.1 (AT5G19875.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-15
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 1

Query: 5   RSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFATP 64
           RS     S LD LSL P P+ +  L  VVF  L  +W+L++ES +E   D +  +   TP
Sbjct: 3   RSPYYGSSYLDYLSL-PNPH-LCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTP 62

Query: 65  VLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSFQ 124
           + L++L  F S    SF+   PW  +   H     GSSPWGVAA++VL+L +V +QS FQ
Sbjct: 63  LFLLLLVHFFSG-GLSFYV--PWPEQDSIHRA---GSSPWGVAAVLVLILFMVSYQSDFQ 116

Query: 125 KK 127
           ++
Sbjct: 123 ER 116

BLAST of CmaCh11G013960 vs. NCBI nr
Match: gi|659094302|ref|XP_008447987.1| (PREDICTED: uncharacterized protein LOC103490309 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 6.0e-56
Identity = 111/125 (88.80%), Postives = 120/125 (96.00%), Query Frame = 1

Query: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60
           M++YRSRTTADSILDSLSLNP PYPVLLLLAVV IFLGASWWLSYESAVEAAED INWIL
Sbjct: 28  MTSYRSRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWIL 87

Query: 61  FATPVLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120
           FATPVLLI+L RFLSS+DPSFFSSSPWDRRRRTHH+PAEG+SPWGVAA IVLLLVL+QFQ
Sbjct: 88  FATPVLLILLVRFLSSLDPSFFSSSPWDRRRRTHHIPAEGTSPWGVAAFIVLLLVLLQFQ 147

Query: 121 SSFQK 126
           SSF++
Sbjct: 148 SSFRE 152

BLAST of CmaCh11G013960 vs. NCBI nr
Match: gi|700187994|gb|KGN43227.1| (hypothetical protein Csa_7G009710 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 6.6e-55
Identity = 108/125 (86.40%), Postives = 120/125 (96.00%), Query Frame = 1

Query: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60
           M++YR+RTTADSILDSLSLNP PYPVLLLLAVV IFLGASWWLSYESAVEAAED INWIL
Sbjct: 26  MTSYRNRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWIL 85

Query: 61  FATPVLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120
           FATPVLLI+L RFLSS+DP+FFSSSPWDRRRRTHH+PAEG+SPWGVAA I+LLLVL+QFQ
Sbjct: 86  FATPVLLILLVRFLSSLDPTFFSSSPWDRRRRTHHIPAEGTSPWGVAAFILLLLVLLQFQ 145

Query: 121 SSFQK 126
           SSF++
Sbjct: 146 SSFRE 150

BLAST of CmaCh11G013960 vs. NCBI nr
Match: gi|703070008|ref|XP_010088668.1| (hypothetical protein L484_003219 [Morus notabilis])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 78/123 (63.41%), Postives = 100/123 (81.30%), Query Frame = 1

Query: 4   YRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFAT 63
           Y  R+T+ SIL+  SLNPLPYPVLL++AV FIFLG  W+ S+E  VE+AE+QINW+LF  
Sbjct: 3   YGKRSTSTSILEGFSLNPLPYPVLLIMAVTFIFLGTKWYFSFEEVVESAEEQINWVLFVV 62

Query: 64  PVLLIILARFLSSVD--PSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQS 123
           P+LLI++ R+LSS++   S F  SPW+RRRRTHH P+EGSSPWGVAA IVLLL+L+Q+QS
Sbjct: 63  PILLILIVRWLSSMEDSDSLFGMSPWERRRRTHHRPSEGSSPWGVAAFIVLLLILLQYQS 122

Query: 124 SFQ 125
            F+
Sbjct: 123 IFR 125

BLAST of CmaCh11G013960 vs. NCBI nr
Match: gi|694439489|ref|XP_009346628.1| (PREDICTED: uncharacterized protein LOC103938347 [Pyrus x bretschneideri])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 80/122 (65.57%), Postives = 99/122 (81.15%), Query Frame = 1

Query: 4   YRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFAT 63
           Y  R+   S L+  SL+PLPYPVLL+LAV+ IFLG SW+ SYESAVE AE Q NW+L  T
Sbjct: 3   YYRRSQTSSFLEGFSLSPLPYPVLLILAVISIFLGISWYSSYESAVEEAEGQFNWVLLLT 62

Query: 64  PVLLIILARFLSSVDPSF-FSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSS 123
           P+ LI++ + LSS+DP + FS SPWDRRRRTHH+P+EGSSPWGVAA I+LLLVL+Q+QSS
Sbjct: 63  PIFLILIVKGLSSMDPGWLFSMSPWDRRRRTHHIPSEGSSPWGVAAFIILLLVLLQYQSS 122

Query: 124 FQ 125
           F+
Sbjct: 123 FR 124

BLAST of CmaCh11G013960 vs. NCBI nr
Match: gi|356508015|ref|XP_003522758.1| (PREDICTED: uncharacterized protein LOC100793388 [Glycine max])

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38
Identity = 78/120 (65.00%), Postives = 102/120 (85.00%), Query Frame = 1

Query: 7   RTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWILFATPVL 66
           R+ A S+LD  SLNP+PYPVLL+L+++ +FLG SW+LSYE  VEAAE+Q+ W+L ATPV+
Sbjct: 5   RSRASSVLDGFSLNPVPYPVLLILSLILLFLGISWYLSYEEVVEAAEEQLGWMLLATPVV 64

Query: 67  LIILARFLSSVDPS---FFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSF 124
           LI++ R+LSSVD S   FF+SSPW+RRRRTHH P+EGSSPWGVAALI+L+LVL+ + S+F
Sbjct: 65  LILVVRWLSSVDTSEWFFFNSSPWERRRRTHHFPSEGSSPWGVAALILLVLVLLHYHSTF 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4L6_CUCSA4.6e-5586.40Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009710 PE=4 SV=1[more]
W9QNH7_9ROSA7.9e-3963.41Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1[more]
A0A0B2RN13_GLYSO1.0e-3865.00Uncharacterized protein OS=Glycine soja GN=glysoja_013695 PE=4 SV=1[more]
I1JSF8_SOYBN1.0e-3865.00Uncharacterized protein OS=Glycine max GN=GLYMA_04G005500 PE=4 SV=2[more]
A0A0D2TWF1_GOSRA3.0e-3865.35Uncharacterized protein OS=Gossypium raimondii GN=B456_008G033700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G21180.14.8e-2757.85 unknown protein[more]
AT5G19875.17.1e-1540.16 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659094302|ref|XP_008447987.1|6.0e-5688.80PREDICTED: uncharacterized protein LOC103490309 [Cucumis melo][more]
gi|700187994|gb|KGN43227.1|6.6e-5586.40hypothetical protein Csa_7G009710 [Cucumis sativus][more]
gi|703070008|ref|XP_010088668.1|1.1e-3863.41hypothetical protein L484_003219 [Morus notabilis][more]
gi|694439489|ref|XP_009346628.1|1.1e-3865.57PREDICTED: uncharacterized protein LOC103938347 [Pyrus x bretschneideri][more]
gi|356508015|ref|XP_003522758.1|1.5e-3865.00PREDICTED: uncharacterized protein LOC100793388 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G013960.1CmaCh11G013960.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 1..124
score: 3.9
NoneNo IPR availablePANTHERPTHR33306:SF7SUBFAMILY NOT NAMEDcoord: 1..124
score: 3.9

The following gene(s) are paralogous to this gene:

None