CmaCh11G012880 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G012880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cma_Chr11 : 8614659 .. 8617451 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTTTTAGACCTCTTACAAAAAAACGTACTCCTTAATATTAAAGTTGGATTTGTGATAAGGGTTCAACGTTTAGAGTTTACTAGACCTAGAGTTTGCCCCTAAATATACTACATAATAGTCAATTCAGACTATGTGAATATAATAAAATGGCTCAGAGGGAAGAAGTTCACAAAATCCTAAAATTCAATATTTTTTAATGTTCTTTGGGAGCCAAATATAGTAGAGTCAGATAGTTGTGTCTGAGAATAGTCCAGATGTACGCAAAATGACTCGAACACTTACAAATATAAAAAAAAAATGTGGTGAGGAGACATTAGTGATAGAAGATACGTGTGAAGTAACACCGAGAAAAGTATTCATATTATTTATATTATATACATTTTTTATATGTTACTATTTTAATTCTTCCCAAATTTGAAAAACCAAACATTTCCCAAGATATTGGAGGACAAATCTAACGGCCCACTTGATCAATTGGAGTTTTGGGCTGTCTTGTCTCGGCCCAATAAAAAGGATACTTGTGGCATGTGGACGACCCCACCAATATCTTATACGCCACGTGGCTTAATAATACGCCATAAATAATCTGCATGAGAATCTGGGTTTAAGCAGAAGGACCAATAGGATGCTGCTGACGTGTAGCAATCCTAATCCACTATATCTTTCCATCCCCAATATAACCTCCATTTTCACTACCTTCATCCTCGTCTAAACCCAGCCTTCACCCAAAAATGGCCACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGCCTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCGCTTTCGGTGGCAGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCCCCTCAAAGCATATGGTAAAGCTCCTTCATATATTTACTTTAGCAGTTTGTTGGGAGTGTTTGTTTAGCTCTCTTTTTGTTTGTCAGGATCAGAGGAAGTTAAAACTGTTCTAAAGTTCTGCCCTGATGTGTTTTCTGTATCTTTATGCTAGTATATTTATCTAGTTTTTACCCTGTGATATAAAGTGTCGTGTCTATTCAACTCGTGGGGCTGTCCCCGCAGAGGCTCGTCTCTAACTGGGCGAGCCTGATGAGCCCGACGCAGTTGTGACAGATACACTACCTGTCTTTGGTCATTTGACCTTGGTATTATTTGATCCGGGTTCTATACACTCATTTATCTTTGATGGATTTGTTGAGCTAGCCCATTTAGAGTTGGAACCGTTAGAGCCACCTTGTCCGAGCCACCTTGTCCGTATTCACCCCCTCTGCTCACGAGTTTTTGATGGCTACTCATAGGATTAAGGGGTAGTATAACAGTGTCACGAGTTTTTGATGGCTACACTCATAGGGTTAAGGGAGGTAGTGTAACAGTGTCAAAATGAGTCATAGAAGTCTGATAGTGTTAAACATGCAAGATTCCGATGTCATCTTGGGTATGGACTAGTTAGGCGAGAATCGCGCTCTCATAGATTTGAGGCTTGGATAGTAACTCTCATACTACCGTCCGTTTGAGAAGTTCCTGCAAATTTTAAGCAGTAAATCTCTACTCTCATCCCTACGAAATTGAGAATTTCGTAGAGATAGAGATTGAAATAGGAGGCAGGAACTTCTCCATCTCCGCCTTATGGATTTCTCTTGGTGAATACGATGAACTCGAGAAAAAAAAAAGAAATTTAAGTTTCAATGCAAACGCTTTGTTTTCCCAACAGGTATGGTCCAGATCGCCCAAAATACTTGGGACCCTTCTCTGAACAAACACCATCCTACCTGACTGGAGAGTTCCCAGGTGACTACGGCTGGGACACAGCCGGTCTGTCAGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCAGATGGGCCATGCTCGGTGCACTAGGCTGTGTCTTCCCTGAAGTCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTATGGTTCAAGGCCGGTTCTCAGATCTTCTCCGAAGGTGGCCTCGATTACCTTGGCAACCCAAACCTCGTCCACGCTCAGAGCATCCTGGCCATCTGGGCTTGCCAGGTTGTGCTGATGGGGTTCGTGGAAGGCTACCGGGTTGGGGGCGGTCCCCTTGGTGAAGGGCTGGACCCAATCTACCCAGGAGGGGCGTTCGACCCACTGGGATTGGCGGATGACCCAGATGCCTTTGCTGAGTTGAAGGTGAAGGAGCTGAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTGCAGGCTATTGTCACTGGAAAGGGTCCTATTGAGAATCTGTTCGACCATGTTGCAGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCCAGAAAATGAAGAATCGAGCAGCTTTGCCCCTCTCCTTTACAGTCGAGCAGGTTCGGTAGGAAACGACTGTTCTTGACTCCATGAGTGAGCGCTCTGTAATGTCTGTAGTACAAACTTCCTGCAATCAAATTTGTATGATTGAAGTTCAAAGTTGTGTGCTTTATGATGTTTATATAGAATTTCTAATTAGATGAACTGCTACTTGCTTGTTTTAACCAAAATCCAATCCTAGCTAGCCTTGGCCTTAGGCATTAAGAACCCAACTTTTCTTGGGGTCATTGATAACTCGATCTCGAGCAGGTTGATCGTTTAGAAATGATGTGTTTAATGTTGTAAATCTTGTAACAAAGAGCAAACTCAAGTAAAAAACTGTGCACGTGCATTAAGCTTCCACCCGTTTATCAGTTATGCA

mRNA sequence

ATATTTTTTAGACCTCTTACAAAAAAACGTACTCCTTAATATTAAAGTTGGATTTGTGATAAGGGTTCAACGTTTAGAGTTTACTAGACCTAGAGTTTGCCCCTAAATATACTACATAATAGTCAATTCAGACTATGTGAATATAATAAAATGGCTCAGAGGGAAGAAGTTCACAAAATCCTAAAATTCAATATTTTTTAATGTTCTTTGGGAGCCAAATATAGTAGAGTCAGATAGTTGTGTCTGAGAATAGTCCAGATGTACGCAAAATGACTCGAACACTTACAAATATAAAAAAAAAATGTGGTGAGGAGACATTAGTGATAGAAGATACGTGTGAAGTAACACCGAGAAAAGTATTCATATTATTTATATTATATACATTTTTTATATGTTACTATTTTAATTCTTCCCAAATTTGAAAAACCAAACATTTCCCAAGATATTGGAGGACAAATCTAACGGCCCACTTGATCAATTGGAGTTTTGGGCTGTCTTGTCTCGGCCCAATAAAAAGGATACTTGTGGCATGTGGACGACCCCACCAATATCTTATACGCCACGTGGCTTAATAATACGCCATAAATAATCTGCATGAGAATCTGGGTTTAAGCAGAAGGACCAATAGGATGCTGCTGACGTGTAGCAATCCTAATCCACTATATCTTTCCATCCCCAATATAACCTCCATTTTCACTACCTTCATCCTCGTCTAAACCCAGCCTTCACCCAAAAATGGCCACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGCCTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCGCTTTCGGTGGCAGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCCCCTCAAAGCATATGGTATGGTCCAGATCGCCCAAAATACTTGGGACCCTTCTCTGAACAAACACCATCCTACCTGACTGGAGAGTTCCCAGGTGACTACGGCTGGGACACAGCCGGTCTGTCAGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCAGATGGGCCATGCTCGGTGCACTAGGCTGTGTCTTCCCTGAAGTCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTATGGTTCAAGGCCGGTTCTCAGATCTTCTCCGAAGGTGGCCTCGATTACCTTGGCAACCCAAACCTCGTCCACGCTCAGAGCATCCTGGCCATCTGGGCTTGCCAGGTTGTGCTGATGGGGTTCGTGGAAGGCTACCGGGTTGGGGGCGGTCCCCTTGGTGAAGGGCTGGACCCAATCTACCCAGGAGGGGCGTTCGACCCACTGGGATTGGCGGATGACCCAGATGCCTTTGCTGAGTTGAAGGTGAAGGAGCTGAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTGCAGGCTATTGTCACTGGAAAGGGTCCTATTGAGAATCTGTTCGACCATGTTGCAGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCCAGAAAATGAAGAATCGAGCAGCTTTGCCCCTCTCCTTTACAGTCGAGCAGGTTCGGTAGGAAACGACTGTTCTTGACTCCATGAGTGAGCGCTCTGTAATGTCTGTAGTACAAACTTCCTGCAATCAAATTTGTATGATTGAAGTTCAAAGTTGTGTGCTTTATGATGTTTATATAGAATTTCTAATTAGATGAACTGCTACTTGCTTGTTTTAACCAAAATCCAATCCTAGCTAGCCTTGGCCTTAGGCATTAAGAACCCAACTTTTCTTGGGGTCATTGATAACTCGATCTCGAGCAGGTTGATCGTTTAGAAATGATGTGTTTAATGTTGTAAATCTTGTAACAAAGAGCAAACTCAAGTAAAAAACTGTGCACGTGCATTAAGCTTCCACCCGTTTATCAGTTATGCA

Coding sequence (CDS)

ATGGCCACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGCCTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCGCTTTCGGTGGCAGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCCCCTCAAAGCATATGGTATGGTCCAGATCGCCCAAAATACTTGGGACCCTTCTCTGAACAAACACCATCCTACCTGACTGGAGAGTTCCCAGGTGACTACGGCTGGGACACAGCCGGTCTGTCAGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCAGATGGGCCATGCTCGGTGCACTAGGCTGTGTCTTCCCTGAAGTCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTATGGTTCAAGGCCGGTTCTCAGATCTTCTCCGAAGGTGGCCTCGATTACCTTGGCAACCCAAACCTCGTCCACGCTCAGAGCATCCTGGCCATCTGGGCTTGCCAGGTTGTGCTGATGGGGTTCGTGGAAGGCTACCGGGTTGGGGGCGGTCCCCTTGGTGAAGGGCTGGACCCAATCTACCCAGGAGGGGCGTTCGACCCACTGGGATTGGCGGATGACCCAGATGCCTTTGCTGAGTTGAAGGTGAAGGAGCTGAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTGCAGGCTATTGTCACTGGAAAGGGTCCTATTGAGAATCTGTTCGACCATGTTGCAGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCCAGAAAATGA

Protein sequence

MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPRK

Homology

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BLAST of CmaCh11G012880 vs. Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 520.8 bits (1340), Expect = 8.9e-147
Identity = 247/265 (93.21%), Postives = 256/265 (96.60%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELV K+GA GG R +MRRTVKSAP SIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+K
Sbjct: 61  FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDH+ADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 2.4e-144
Identity = 243/265 (91.70%), Postives = 254/265 (95.85%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALK  NELVRK+G+FGG R TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGV FGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYRVGGGP
Sbjct: 121 NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLD IYPGGAFDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL+DHVADPVANNAWA+ATNFVP K
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 9.2e-144
Identity = 241/265 (90.94%), Postives = 253/265 (95.47%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAI+QSAFAGQ ALK  NELVRK+G+F G R TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1   MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+WA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLD IYPGGAFDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDHVADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.1e-141
Identity = 236/263 (89.73%), Postives = 251/263 (95.44%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAF G+  L+Q NE +RK G FG +RFTMRRTVKSAP+SIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L K
Sbjct: 61  FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIF+EGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDP+YPGGAFDPLGLADDPD+FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240

Query: 241 NLFDHVADPVANNAWAYATNFVP 264
           NL+DHVADPVANNAWA+ATNFVP
Sbjct: 241 NLYDHVADPVANNAWAFATNFVP 263

[Close]

BLAST of CmaCh11G012880 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.5e-141
Identity = 239/265 (90.19%), Postives = 247/265 (93.21%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MAT AIQQSAF GQ   K  NE +RKVG FG  R TMRRTVKSAPQSIWYG DRPKYLGP
Sbjct: 1   MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLD IYPGGAFDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL DH+ DPVANNAWAYATNFVP K
Sbjct: 241 NLSDHINDPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. TrEMBL
Match: A0A0A0K565_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_7G033300 PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 1.2e-150
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVGA GG+RFTMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGESVWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDHVADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. TrEMBL
Match: B9T0C1_RICCO (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_0483250 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 6.2e-147
Identity = 251/265 (94.72%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALK SNELVRKVG+ GG R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKPSNELVRKVGSVGGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDHVADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. TrEMBL
Match: V9VHL7_ZIZJJ (Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba PE=2 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 2.4e-146
Identity = 252/265 (95.09%), Postives = 259/265 (97.74%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVG+ GG R TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGS-GGGRITMRRTVKSVPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL+DHVADPVANNAWAYATNFVP K
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGK 264

[Close]

BLAST of CmaCh11G012880 vs. TrEMBL
Match: B9IAR5_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0014s16300g PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 2.4e-146
Identity = 252/265 (95.09%), Postives = 257/265 (96.98%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVG+ G  R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGSSGDGRITMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGESVWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAI+TGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIITGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL DH+ADPVANNAWAYATNFVP K
Sbjct: 241 NLLDHLADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. TrEMBL
Match: A0A067K1A4_JATCU (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_18481 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 4.0e-146
Identity = 250/265 (94.34%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVG+FGG R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGSFGGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL DH+ADPVANNAWAYATNFVP K
Sbjct: 241 NLSDHLADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 506.9 bits (1304), Expect = 7.5e-144
Identity = 237/263 (90.11%), Postives = 252/263 (95.82%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQS+FAGQ ALK SNEL+RKVG  GG R TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPE+L+K
Sbjct: 61  FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF+EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDP+YPGGAFDPL LA+DP+AF+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVP 264
           NLFDH+ADPVANNAW+YATNFVP
Sbjct: 241 NLFDHLADPVANNAWSYATNFVP 263

[Close]

BLAST of CmaCh11G012880 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 505.4 bits (1300), Expect = 2.2e-143
Identity = 235/265 (88.68%), Postives = 253/265 (95.47%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQS+FAGQ ALK S++L++KVG  GG R TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPE+L+K
Sbjct: 61  FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGF+EGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDP+YPGGAFDPL LA+DP+AF+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDH+ADPVANNAW+YATNFVP K
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 504.2 bits (1297), Expect = 4.9e-143
Identity = 236/266 (88.72%), Postives = 252/266 (94.74%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAF-GGSRFTMRRTVKSAPQSIWYGPDRPKYLG 60
           MATSAIQ S+FAGQ  LK SN+L+RK+GA  GG R  MRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1   MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLG 60

Query: 61  PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLA 120
           PFSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPE+L+
Sbjct: 61  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120

Query: 121 KNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGG 180
           KNGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGF+EGYR+GGG
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180

Query: 181 PLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
           PLGEGLDP+YPGGAFDPL LA+DP+AF+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240

Query: 241 ENLFDHVADPVANNAWAYATNFVPRK 266
           ENLFDH+ADPVANNAWAYATNFVP K
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPGK 266

[Close]

BLAST of CmaCh11G012880 vs. TAIR10
Match: AT1G29930.1 (AT1G29930.1 chlorophyll A/B binding protein 1)

HSP 1 Score: 415.6 bits (1067), Expect = 2.3e-116
Identity = 208/268 (77.61%), Postives = 229/268 (85.45%), Query Frame = 1


Query: 2   ATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTV---KSAPQSIWYGPDRPKYL 61
           +T A+   AFAG+ A+K S      +G+    R TMR+TV   K    S WYG DR KYL
Sbjct: 4   STMALSSPAFAGK-AVKLSPAASEVLGS---GRVTMRKTVAKPKGPSGSPWYGSDRVKYL 63

Query: 62  GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVL 121
           GPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 64  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 123

Query: 122 AKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRV-G 181
           A+NGVKFGE+VWFKAGSQIFS+GGLDYLGNP+LVHAQSILAIWA QV+LMG VEGYRV G
Sbjct: 124 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 183

Query: 182 GGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 241
            GPLGE  D +YPGG+FDPLGLA DP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 184 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 243

Query: 242 PIENLFDHVADPVANNAWAYATNFVPRK 266
           PIENL DH+ADPV NNAWA+ATNFVP K
Sbjct: 244 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmaCh11G012880 vs. TAIR10
Match: AT2G34420.1 (AT2G34420.1 photosystem II light harvesting complex gene B1B2)

HSP 1 Score: 415.6 bits (1067), Expect = 2.3e-116
Identity = 204/268 (76.12%), Postives = 227/268 (84.70%), Query Frame = 1


Query: 2   ATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTV---KSAPQSIWYGPDRPKYL 61
           +T A+   AFAG+     +++++      G  R TMR+TV   K    S WYG DR KYL
Sbjct: 4   STMALSSPAFAGKAVKPAASDVL------GSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 63

Query: 62  GPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVL 121
           GPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L
Sbjct: 64  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 123

Query: 122 AKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG 181
           A+NGVKFGE+VWFKAGSQIFS+GGLDYLGNP+LVHAQSILAIWA QV+LMG VEGYRV G
Sbjct: 124 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 183

Query: 182 -GPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 241
            GPLGE  D +YPGG+FDPLGLA DP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 184 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 243

Query: 242 PIENLFDHVADPVANNAWAYATNFVPRK 266
           P+ENL DH+ADPV NNAWA+ATNFVP K
Sbjct: 244 PLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. NCBI nr
Match: gi|659124297|ref|XP_008462084.1| (PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Cucumis melo])

HSP 1 Score: 541.2 bits (1393), Expect = 1.0e-150
Identity = 260/265 (98.11%), Postives = 262/265 (98.87%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVGA GGSRFTMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQAALKQSNELVRKVGAVGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGESVWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDHVADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. NCBI nr
Match: gi|449453598|ref|XP_004144543.1| (PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Cucumis sativus])

HSP 1 Score: 540.4 bits (1391), Expect = 1.7e-150
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVGA GG+RFTMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGESVWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDHVADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. NCBI nr
Match: gi|255581778|ref|XP_002531690.1| (PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Ricinus communis])

HSP 1 Score: 528.1 bits (1359), Expect = 8.9e-147
Identity = 251/265 (94.72%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALK SNELVRKVG+ GG R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKPSNELVRKVGSVGGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NLFDHVADPVANNAWAYATNFVP K
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CmaCh11G012880 vs. NCBI nr
Match: gi|1021311913|ref|NP_001310796.1| (chlorophyll a-b binding protein 151, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 526.2 bits (1354), Expect = 3.4e-146
Identity = 252/265 (95.09%), Postives = 259/265 (97.74%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVG+ GG R TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGS-GGGRITMRRTVKSVPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGE+VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL+DHVADPVANNAWAYATNFVP K
Sbjct: 241 NLYDHVADPVANNAWAYATNFVPGK 264

[Close]

BLAST of CmaCh11G012880 vs. NCBI nr
Match: gi|224131818|ref|XP_002321186.1| (chlorophyll a/b-binding family protein [Populus trichocarpa])

HSP 1 Score: 526.2 bits (1354), Expect = 3.4e-146
Identity = 252/265 (95.09%), Postives = 257/265 (96.98%), Query Frame = 1


Query: 1   MATSAIQQSAFAGQPALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQ ALKQSNELVRKVG+ G  R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGSSGDGRITMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LAK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAK 120

Query: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180
           NGVKFGESVWFKAGSQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYRVGGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAI+TGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIITGKGPIE 240

Query: 241 NLFDHVADPVANNAWAYATNFVPRK 266
           NL DH+ADPVANNAWAYATNFVP K
Sbjct: 241 NLLDHLADPVANNAWAYATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of CmaCh11G012880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB21_GOSHI	8.9e-147	93.21	Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-...	[more]
CB26_PETSP	2.4e-144	91.70	Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 S...	[more]
CB23_TOBAC	9.2e-144	90.94	Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 ...	[more]
CB215_PEA	1.1e-141	89.73	Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE...	[more]
CB24_SOLLC	2.5e-141	90.19	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4...	[more]

BLAST of CmaCh11G012880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K565_CUCSA	1.2e-150	97.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_7G03330...	[more]
B9T0C1_RICCO	6.2e-147	94.72	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis GN=RCOM_04832...	[more]
V9VHL7_ZIZJJ	2.4e-146	95.09	Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba PE=2 SV=1	[more]
B9IAR5_POPTR	2.4e-146	95.09	Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0...	[more]
A0A067K1A4_JATCU	4.0e-146	94.34	Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas GN=JCGZ_18481 ...	[more]

BLAST of CmaCh11G012880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G05100.1	7.5e-144	90.11	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	2.2e-143	88.68	photosystem II light harvesting complex gene 2.2	[more]
AT3G27690.1	4.9e-143	88.72	photosystem II light harvesting complex gene 2.3	[more]
AT1G29930.1	2.3e-116	77.61	chlorophyll A/B binding protein 1	[more]
AT2G34420.1	2.3e-116	76.12	photosystem II light harvesting complex gene B1B2	[more]

BLAST of CmaCh11G012880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124297\|ref\|XP_008462084.1\|	1.0e-150	98.11	PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Cucumis melo]	[more]
gi\|449453598\|ref\|XP_004144543.1\|	1.7e-150	97.74	PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Cucumis sativus]	[more]
gi\|255581778\|ref\|XP_002531690.1\|	8.9e-147	94.72	PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Ricinus communis]	[more]
gi\|1021311913\|ref\|NP_001310796.1\|	3.4e-146	95.09	chlorophyll a-b binding protein 151, chloroplastic [Ziziphus jujuba]	[more]
gi\|224131818\|ref\|XP_002321186.1\|	3.4e-146	95.09	chlorophyll a/b-binding family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012880.1	CmaCh11G012880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..265 score: 1.2E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 66..231 score: 7.7
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 58..257 score: 7.3
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 48..262 score: 2.22
None	No IPR available	PANTHER	PTHR21649:SF8	SUBFAMILY NOT NAMED	coord: 1..265 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G012880	Cla015680	Watermelon (97103) v1	cmawmB121
CmaCh11G012880	Csa7G033300	Cucumber (Chinese Long) v2	cmacuB153
CmaCh11G012880	MELO3C024206	Melon (DHL92) v3.5.1	cmameB094
CmaCh11G012880	ClCG02G002750	Watermelon (Charleston Gray)	cmawcgB097
CmaCh11G012880	CSPI07G02790	Wild cucumber (PI 183967)	cmacpiB151
CmaCh11G012880	CmoCh11G018320	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G012880	CmoCh19G008790	Cucurbita moschata (Rifu)	cmacmoB145
CmaCh11G012880	Lsi11G013550	Bottle gourd (USVL1VR-Ls)	cmalsiB100
CmaCh11G012880	Cp4.1LG04g04040	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G012880	MELO3C024206.2	Melon (DHL92) v3.6.1	cmamedB102
CmaCh11G012880	CsaV3_7G002620	Cucumber (Chinese Long) v3	cmacucB0176
CmaCh11G012880	Cla97C02G029240	Watermelon (97103) v2	cmawmbB101
CmaCh11G012880	Bhi05G001283	Wax gourd	cmawgoB0115
CmaCh11G012880	CsGy7G002410	Cucumber (Gy14) v2	cgybcmaB899

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G012880	CmaCh19G008660	Cucurbita maxima (Rimu)	cmacmaB151

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G012880	Cucumber (Gy14) v2	cgybcmaB710
CmaCh11G012880	Melon (DHL92) v3.6.1	cmamedB103
CmaCh11G012880	Silver-seed gourd	carcmaB0272
CmaCh11G012880	Silver-seed gourd	carcmaB0483
CmaCh11G012880	Silver-seed gourd	carcmaB1471
CmaCh11G012880	Cucurbita maxima (Rimu)	cmacmaB155
CmaCh11G012880	Cucumber (Gy14) v1	cgycmaB0215
CmaCh11G012880	Cucumber (Gy14) v1	cgycmaB0294
CmaCh11G012880	Cucurbita moschata (Rifu)	cmacmoB149
CmaCh11G012880	Cucumber (Chinese Long) v2	cmacuB141
CmaCh11G012880	Melon (DHL92) v3.5.1	cmameB095
CmaCh11G012880	Cucurbita pepo (Zucchini)	cmacpeB118
CmaCh11G012880	Cucurbita pepo (Zucchini)	cmacpeB123
CmaCh11G012880	Bottle gourd (USVL1VR-Ls)	cmalsiB090