CmaCh11G012530 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCytochrome c biogenesis protein CcsA
LocationCma_Chr11 : 8382725 .. 8388991 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGTAGCTCAAATATCTATTGCGAGAGTACTTATGGTTGGTTCCATATTGAAAAAGTTGTCGTTGACTATCTTCAGTCGCTGAGGTGGGGTCTCGGTTGAAGAAGCCGGAATTGTCGTGGGGGAGGGAATTGTCGTGGGTGAGGGATGAATCGATGGAGGTCTCATAGAAGGCTAAAGAGTGTGGAGCAGCAATGGCCGAGACGAATAGGAGAAATAGGCAGAGGATCATCGTTGCCATTTTTGTTTGATGGTGATAGAGGTGTTTGTGAAAATCGTTCCCATTTTCGTCTCTTATTTATAGACGCCAAGTAAATAAACTATCTAAATTAAGACTCTCTATAAATACACAAAGCATAGATTTGACTTAGCCATCTTGACCTAAACCTATTTATCTTTTTAATTACCATTTTACCCACTAATTATTTTTTTAAATAATATTCCATTTCCTAGCTTAATTTAGCCTAATAAATTAGAGCTCATGTGGGTTAAATTCTAATGTTTGCCCTTTTATACTCTTTTTGGGTTAGTTTTCCAAATTTTCTCATATAGCCTTTCATATCCATAGGGTGTTACATTTACCATGGGCATTTGATGATTGGGCAATAACGAATTCGGGAAGGAAAATTATGAAATATTGATCCTAAATGAGGGTGGAATGAGAGACGATGAACGAGAACTTTGAGGTGGATGTGATCAAATGAAATTAGAGTCAAAGATGAGTTTTTGAGTGAACAATAGACCATTGAAGAAACGAAGAGATTGAGGTAAAAATGGATATGTAAAGTCACTATCATATGCATGACTTAAGTTATTGTGCGAAAATATTCATTTAAAACCATTTCATAGAATGATGTCAAGAGTTATAAGTTTAAATAAAAGTTTTAAAATAAAACAAATGAAATATTTAAATAAATCAAAATAAAACAAAAGGTAAATATTAAAAGAGAAATGACCTATACTAATCTAAAATCTATGAAAATAAATGTAACTACTCTATGCAAGTTCCATGATTTCTGATGCAATGTCGTCTGTCAACCGTATAGGGTTATCTTGCCTTTACCTAAAATATAAAAATATTATATGACTTGAATATTTGAAGAAATACTCACTAAGTGATCCCACTATTAGAGTTAAGGAAGGCAAACACATGCAATCATGATTAAGGGTATCCTTAAAATCATCATAGAGGTGACTTCCAGTCCAGAAAAATTAAATGTGTAGTACTTCCTTACACACAACCCACGTGTGCAACCGTGAGCCTACCAGGTGGTTCACACACCCCCTGTGTCCATCATAGTCGAGCTAGTTAGCTGTAGTCGAACTTCTGGAGGTACAAAAAACCCTTGAATATCATGCAAGGCATGATGATGATCATCATCATCATAAAAGGGGGAGTATCCCGATGTAAATGAGTATACAATATGCATGAGGTCTCTATACTTTTCATATTAAAATCATTCATGTGACATATCCCCACACATCCTTCACATATTACTCTAGGTAACATGCATGCATAAGACTTCATTACATTCATCATTTATGACATCATGTAGGGGTTGTGAATTAGAAAACTCATCATACTGCAACATGACATTTCATACATGCACATCATTGTAACATGAGATATCATCGTATCATGTCGTATCATCATCATGTATCTCATGTCATCACATCATAATGCATCATACTTGTCACAATTGTACTTTTGTGGTAAAGGAATAGTCATTATATGACACTTGTTATAATTTAACAAATAAGTTAATTGTGTGAAATTTAGATTTTACAGACAATATCAACCAATGCTTGAACCTCGGGTCAGGTTTGAGAAAAATGTCTTAGAAAATGTGAGCGAGAAAGTAGGTTAATTTTTTTTTTTAATTTAAGAAAACAATCTTATAAGCTAAAAATGAATAATCAATATCTTTTGCATAACGGAAGTCAGTTATCTGGCCCGACCTAAAAGGAGTTTGAATCTTGAATAATTTCGTGCACTTCCTTAAACTTTAAAAGTCCTTTCTAGGAGTCTACAACGTGCATATCTTGCTATAGCTTGCCGCTTCTTTCAATGTCCTCCCAAAATTCATAACTATAGGATTATAGGAAACATTTGGAAAACAACAATAACTATCATTTGCAAGGTGTCGCGATCATACTTGTTTAAAGCATGTTGCATGTGGCTACGTATCGGATGTCTCGATCATGCTAGTCTAAGACGTGTTATCTATGGCCACATGTCCATTCCAAACCTCTTTTACTTGCTTTCATATATAGGTAGGTATTTACTATTTCTATCGTGTCAATATGGGGGTGTATGTTCACCAAAATTATGTCTACACATACTAAAATGCCCCAAGATGTACTATAGGGGATAAGACTAGTCGTCAATTCTTTCTACCTGGATTATATGCTACTAAAGTTGTGGTTGTTGCTTATTTGCTTTAACCTATAACATTGGTTTCTTACAAATTATTTTTAATGCATTTCCTCGCTCACGTTTTCTCAAACACGTTCTCTCAGATTTGACCAAGGTTCGATCGTATGTCCAAATTGTTCGCGACTTATGATTTCCATACAACTAACTTGTTTGCCAGGTTAGAACAAGTTTCCCACAATCTCTATCCCGCTACCACAAAAATGTGACTGTGACAAGTGGTATAAGAATCGAGTCGACTCCTTGAATCATAGTAATCAAATATTTCCACTACAAAATAACTAGATAAGTCCCAGGCTGACCAATTGGTAGTAATCGAAGATCGACTGCTCTACCTCAATGAAGTTCTAGATGGAATGAGGCTTTTGGAATCTCATACGAATGAGATTTCCACTAAAGCTGATAGGATTGATGAATTGGCAGGCCTCCTTGAGGCAATGCCCGTCCATGAATTATTAGTTAAAGTCGAAGTCCTAGAAGACAAGGCCAAAATTACAAGTGGCTTCGAGCATAGGGATAGCTCGATGGACTCCATTACCTTGATGGAAGAACGTATTGAGGGCCTAGACAATGCCCAACACGTGATCGTTTAGATGATTTCATAAATGTCTAAGGATTTAAGAGCAACCTTTAAAGTGCTCCGGGCTAAAGTGGCAGATTTAAGCACCAAGTTAAACTACATTATGAGAAGTGGGGAACCAAATTCTAATTAGGGGTGTGGTCCAATTTAACAAGGTAAAGATTCTAGAGCCTTAGCCCTAAGCCCTTATGTGGGCTTGAGATGCTAAGGCTTTAAAGAATTTTATCTTTGACGAGCTACAAATACCATGGTAGAAGAGGTGAAGGTCATGTTGGCACAATGCTTCTAGCTGACGATGCAAAGTTGTGGTGGAGATCCAAGTACATGGACATTCAAGATGGTCAATGTACTGGATACTTGGAAGAGTTAAAACAAGAGCTCCTCTCACAAATCTTCCCGGAGAATGTTTAGATAGTAGCAAGGAGTTAAGGAAGCTGTGACAACTATGAATATCTTAGACTACATTAAGTAGTTTTCTGGGCTTATGTGGATATTTGCGACATGGTTGAGAAAGACCAAGCTCTACGAAAAAAAGTTCAAGATCTTTCCACGCCCGATGCTATAGTTGAACAATTGTTTGGCCTGAACAATGATCAATTCCATGACGTAAAGCAAAACCAGGCTTACGTAATTGGAGGTAAAATAAATTACCAACCCAACTTCCCCAAAGGTGAGGAAAGTGACAAAGTTGAAGGTGGAGGAGGATAATGTGAGTCCTCTCAACAAAGAGGTAGAACTCCATGGCATAGAACTGACAGCTAGAACGGTCACAGCCAAGGCCCCTTGTCTTACTTCATATGCAAAGGGGCCTACCAAAAAACAGAGTGCCTACAAAAGACAACACTTTATGTCTTTCAAGCGAAATTTAGAAGGAAGTCAAAAGTTGAGTATGAGATGGTGTAAATTGAAACCCCACTAGCTGAAAACATTGAACACCTCCACATGGGGAACTAAAGCACTAGTCTCCTCTCCAAAAGAGAGTGGAAAAGATAGAAGAGCCAAAAGAACATAGTTTCACGTATGTCGAGGCTTGGGTTAACCTGAGAGCGACCAAGAACACTTATTGTTGAAATTTGTCATAAGTTTTTTATTTAATTTAGTTGTTAGCTCCCATCAATTTATAATCGTTGATTAAATAAGAATGTTATTAAATTGGTTATTGATTTTGTAACCATTTTAATATTAATCCTTATTTAGTTTCATAATGTTTGATTATTCAAACAATTGTCTCCATATAATGGCCTTGTCTAGGAGGTTGAGTACATCAAAATTTGATAGAGTTTTATGTGTCACATTGTATTTCTTGAATGACATTTTGGTGAGAGTCTTTGTAGTGTGAGAGTGAGGTATTCCTTGTAACACTTTGATTATTAGTGATTGGTTGCTACCTGTGGATGTAGGGAAACTTCTTCTCTCCGAACCACGTAAATATCTTGGTGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTACATTCGTTCTACTTTCGCTATAACAATCGGTATCATAGTTTTGTGGTTGTAGCATTTGGTGCACAACAAGTGGTATTACAGCCAAGCTGTGGTATTTAGGATATTGTAACAGTTTTGACCTCATCGACCACTAGACGTGCTCACAATCGTGCTTATTTTCTTGAAAATCACTTTTAAAGAATTGTGTTTTTCTACTTCCATCCAGATTACTTATTACCAATGGCAGAATCATTTGGAATTAAATCACGACGTGGATCGAGAATTATGGGTTCTAATCTCGAAGTAGAAAAAATTGATGGAACCAATAATTTTGGTGTTTGGCAAGGTGAAGTTAGCGATTTGCTAGCCATGCAAGACCTTGATGCTTCTCTCGAAGATGAGATGCCCGAAGACATGACAGAAGCAGAATGAAGAAAATTAAATCGACAAACTTGTTGAATTATTCGATCCTGTCTTGGCAAGGATCATAAATATCCATTTATGAAGGTGACCATGGCGAGAGAACCATGGGATAAACTTGAGGTGAAATATATGTAGAAGAGTGTGGAAAATAAACTCCATTTGAAGAATAAACTCTTCCATTTTGATTATAAGAAAGGTATCTCAATGGCTGAGCATTTGGATGATTTTAACAAAATCATCACCTGATTTTCTCAATTTGGATGTTATAATTGATGACGTAACAAGATGTTGCTATTGAATGTTATATAAATCCCTAGTGAATGTGATCCTAATTCTTAGTTAACCGTTTTTTTTGTTAGGTAACTATTTTTACGTTAAACAACACAATTGAAGTAAGTGGGACACAATTGAAGTAAGTGGGAAGTAAACGTCGAGTGGAAGAGCGTGAGTTAAGTTGCCATTTACTTTTCTATGTTAGGATAATTTGTTATTTAAATATCACAACTGAATGACAAATTATATCATCGGGTCTTTAGTAAATCTCCCTCACTTTCCGTTATTTTTTTTCTCGAAGAAATTTTCCTACGGTCAGTTTTTTTGTTGACGTTTTCCTCCCAATTACCAGAAGTCAACAAGTGGTATCAGAGCTTGGTTCAATCCATCAGTGGTATATCATTACGGAAGAGCCAACCTTATCAACAGTCAAGTTGAATAGCTCATGTAGTTAGAGCGTCGACCTAACAACACATAGCCCTCAGGTTCGAGAAAAAGAAAATGCAAAATGCGAAAATACACACATCGTGGGGTCCATCCCTGGGTAGGCTCACTCACTCCTCCATGTTGCCCCGTCATGTCCTGGTATCTCCATCACTGCCAGAAAGAGGCTAACTGGGGGAGAGCCAATTCAATTGAAGAAGGAGCAAGTGTTCCTTGGACCATATTACCGGCGATGGGCATTTATTACTTGGACCATATTCGCAATTTATTTACATACGCGAACAAATAAAAATTTTGAAGGTGTAAATTCTGCAATTGTGGCCTCTATGGGTTTTCTTATAATTTGGATATGCTATTTTGGGGTCAATCTATTAGGGATAGGGNTTATTTTTTTTCTTATAAAAATTATTATAAGTCTCAACTGATTCAACAATTAGATCATTGGAGTTATCGTATTATTAGTCTAGGGTTTATCTTTTTAAGCATAGGTATTCTTTCAGGGGCCGTATGGGCTAATGAGACATGGGGATCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTGGACCATATTCGCAATTTATTTACATACGCGAACAAATAAAAATTTTGAAGGTGTAAATTCTGCAATTGTGGCCTCTATG

mRNA sequence

ATGAATAGTAGCTCAAATATCTATTGCGAGAGTACTTATGTCGCTGAGGTGGGGTCTCGGTTGAAGAAGCCGGAATTGTCGTGGGGGAGGGAATTGTCGTGGGTGAGGGATGAATCGATGGAGTCTCAACTGATTCAACAATTAGATCATTGGAGTTATCGTATTATTAGTCTAGGGTTTATCTTTTTAAGCATAGGGGCCGTATGGGCTAATGAGACATGGGGATCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTGGACCATATTCGCAATTTATTTACATACGCGAACAAATAAAAATTTTGAAGGTGTAAATTCTGCAATTGTGGCCTCTATG

Coding sequence (CDS)

ATGAATAGTAGCTCAAATATCTATTGCGAGAGTACTTATGTCGCTGAGGTGGGGTCTCGGTTGAAGAAGCCGGAATTGTCGTGGGGGAGGGAATTGTCGTGGGTGAGGGATGAATCGATGGAGTCTCAACTGATTCAACAATTAGATCATTGGAGTTATCGTATTATTAGTCTAGGGTTTATCTTTTTAAGCATAGGGGCCGTATGGGCTAATGAGACATGGGGATCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTGGACCATATTCGCAATTTATTTACATACGCGAACAAATAAAAATTTTGAAGGTGTAAATTCTGCAATTGTGGCCTCTATG

Protein sequence

MNSSSNIYCESTYVAEVGSRLKKPELSWGRELSWVRDESMESQLIQQLDHWSYRIISLGFIFLSIGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHTRTNKNFEGVNSAIVASM
Homology
[Close]
BLAST of CmaCh11G012530 vs. Swiss-Prot
Match: CCSA_CUCSA (Cytochrome c biogenesis protein CcsA OS=Cucumis sativus GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.9e-39
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. Swiss-Prot
Match: CCSA_MORIN (Cytochrome c biogenesis protein CcsA OS=Morus indica GN=ccsA PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-35
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 1 

Query: 43  QLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAIYL 102
           QLIQQLD WSYRIISLGFIFL+IG    AVWANE WGSYWNWDPKETWAFITWT+F+IYL
Sbjct: 213 QLIQQLDLWSYRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTLFSIYL 272

Query: 103 HTRTNKNFEGVNSAIVASM 118
           HTRTNKNFE VNSAIVASM
Sbjct: 273 HTRTNKNFESVNSAIVASM 291

[Close]
BLAST of CmaCh11G012530 vs. Swiss-Prot
Match: CCSA_SPIOL (Cytochrome c biogenesis protein CcsA OS=Spinacia oleracea GN=ccsA PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-35
Identity = 73/110 (66.36%), Postives = 82/110 (74.55%), Query Frame = 1 

Query: 10  ESTYVAEVGSRLKKPELSWGRELSWVRDESMESQLIQQLDHWSYRIISLGFIFLSIG--- 69
           ES +  E+    +K  +      S+VR+    SQLI+QLDHWSYR+ISLGFIFL+IG   
Sbjct: 183 ESFFFGEIQYINEKSNIVQNASPSYVRNY-YRSQLIEQLDHWSYRVISLGFIFLTIGILS 242

Query: 70  -AVWANETWGSYWNWDPKETWAFITWTIFAIYLHTRTNKNFEGVNSAIVA 116
            AVWANE WGSYWNWDPKETWAFITWTIFAIYLH RTNKN  G NSAIVA
Sbjct: 243 GAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHIRTNKNLRGANSAIVA 291

[Close]
BLAST of CmaCh11G012530 vs. Swiss-Prot
Match: CCSA_PLAOC (Cytochrome c biogenesis protein CcsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-34
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1 

Query: 43  QLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAIYL 102
           QLIQQLDHWSYR+ISLGFIFL+IG    AVWANE WG+YWNWDPKETWAFITWTIFAIYL
Sbjct: 213 QLIQQLDHWSYRVISLGFIFLTIGILSGAVWANEAWGAYWNWDPKETWAFITWTIFAIYL 272

Query: 103 HTRTNKNFEGVNSAIVASM 118
           HTRTNK+ +G NSAIVAS+
Sbjct: 273 HTRTNKDLQGANSAIVASI 291

[Close]
BLAST of CmaCh11G012530 vs. Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein CcsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.5e-34
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 1 

Query: 42  SQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAIY 101
           +Q IQQLDHWSYR+ISLGF+FL+IG    AVWANE WGSYWNWDPKETWAFITWTIFAIY
Sbjct: 212 AQFIQQLDHWSYRVISLGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIY 271

Query: 102 LHTRTNKNFEGVNSAIVASM 118
           LHTRTNKN +  NSAIVASM
Sbjct: 272 LHTRTNKNLQVANSAIVASM 291

[Close]
BLAST of CmaCh11G012530 vs. TrEMBL
Match: A0A0S2IHG4_CUCPE (Cytochrome c biogenesis protein CcsA OS=Cucurbita pepo var. texana GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. TrEMBL
Match: A0A0S2IGF9_CUCPE (Cytochrome c biogenesis protein CcsA OS=Cucurbita pepo subsp. ovifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. TrEMBL
Match: A0A0S2IGR6_CUCMO (Cytochrome c biogenesis protein CcsA OS=Cucurbita moschata GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. TrEMBL
Match: A0A0S2IFK4_9ROSI (Cytochrome c biogenesis protein CcsA OS=Cucurbita ecuadorensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. TrEMBL
Match: W8E717_9ROSI (Cytochrome c biogenesis protein CcsA OS=Cucumis hystrix GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-37
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. TAIR10
Match: ATCG01040.1 (ATCG01040.1 Cytochrome C assembly protein)

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-34
Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 1 

Query: 13  YVAEVGSRLKKPELSWGRELSWVRDESMESQLIQQLDHWSYRIISLGFIFLSIG----AV 72
           Y+ E  S L +  +++    ++ R      QLIQQLD WS+RIISLGFIFL++G    AV
Sbjct: 197 YINERNSILLQQNINFSFSRNYYR-----YQLIQQLDFWSFRIISLGFIFLTVGILSGAV 256

Query: 73  WANETWGSYWNWDPKETWAFITWTIFAIYLHTRTNKNFEGVNSAIVA 116
           WANETWGSYWNWDPKETWAFITWTIFAIYLH +TN+N  G+NSAIVA
Sbjct: 257 WANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVA 298

[Close]
BLAST of CmaCh11G012530 vs. NCBI nr
Match: gi|590000461|ref|YP_009004090.1| (cytochrome c heme attachment protein [Cucumis hystrix])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. NCBI nr
Match: gi|952954540|gb|ALO21901.1| (CcsA (plastid) [Cucurbita cordata])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. NCBI nr
Match: gi|346578243|ref|YP_004841834.1| (cytochrome c heme attachment protein [Cucumis melo subsp. melo])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. NCBI nr
Match: gi|952955043|gb|ALO22397.1| (CcsA (plastid) [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

[Close]
BLAST of CmaCh11G012530 vs. NCBI nr
Match: gi|952954704|gb|ALO22063.1| (CcsA (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 

Query: 41  ESQLIQQLDHWSYRIISLGFIFLSIG----AVWANETWGSYWNWDPKETWAFITWTIFAI 100
           +SQLIQQLDHWSYRIISLGFIFLSIG    AVWANETWGSYWNWDPKETWAFITWTIFAI
Sbjct: 213 KSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAI 272

Query: 101 YLHTRTNKNFEGVNSAIVASM 118
           YLHTRTNKNFEGVNSAIVASM
Sbjct: 273 YLHTRTNKNFEGVNSAIVASM 293

The following BLAST results are available for this feature:
BLAST of CmaCh11G012530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCSA_CUCSA7.9e-3993.83Cytochrome c biogenesis protein CcsA OS=Cucumis sativus GN=ccsA PE=3 SV=1[more]
CCSA_MORIN9.0e-3587.34Cytochrome c biogenesis protein CcsA OS=Morus indica GN=ccsA PE=3 SV=1[more]
CCSA_SPIOL9.0e-3566.36Cytochrome c biogenesis protein CcsA OS=Spinacia oleracea GN=ccsA PE=3 SV=1[more]
CCSA_PLAOC2.6e-3483.54Cytochrome c biogenesis protein CcsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1[more]
CCSA_VITVI4.5e-3482.50Cytochrome c biogenesis protein CcsA OS=Vitis vinifera GN=ccsA PE=3 SV=1[more]
BLAST of CmaCh11G012530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IHG4_CUCPE8.8e-3793.83Cytochrome c biogenesis protein CcsA OS=Cucurbita pepo var. texana GN=ccsA PE=3 ... [more]
A0A0S2IGF9_CUCPE8.8e-3793.83Cytochrome c biogenesis protein CcsA OS=Cucurbita pepo subsp. ovifera GN=ccsA PE... [more]
A0A0S2IGR6_CUCMO8.8e-3793.83Cytochrome c biogenesis protein CcsA OS=Cucurbita moschata GN=ccsA PE=3 SV=1[more]
A0A0S2IFK4_9ROSI8.8e-3793.83Cytochrome c biogenesis protein CcsA OS=Cucurbita ecuadorensis GN=ccsA PE=3 SV=1[more]
W8E717_9ROSI8.8e-3793.83Cytochrome c biogenesis protein CcsA OS=Cucumis hystrix GN=ccsA PE=3 SV=1[more]
BLAST of CmaCh11G012530 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01040.18.1e-3463.55ATCG01040.1 Cytochrome C assembly protein[more]
BLAST of CmaCh11G012530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590000461|ref|YP_009004090.1|1.3e-3693.83cytochrome c heme attachment protein [Cucumis hystrix][more]
gi|952954540|gb|ALO21901.1|1.3e-3693.83CcsA (plastid) [Cucurbita cordata][more]
gi|346578243|ref|YP_004841834.1|1.3e-3693.83cytochrome c heme attachment protein [Cucumis melo subsp. melo][more]
gi|952955043|gb|ALO22397.1|1.3e-3693.83CcsA (plastid) [Cucurbita moschata][more]
gi|952954704|gb|ALO22063.1|1.3e-3693.83CcsA (plastid) [Cucurbita ecuadorensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002541Cyt_c_assembly
Vocabulary: Biological Process
TermDefinition
GO:0017004cytochrome complex assembly
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0020037 heme binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012530.1CmaCh11G012530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002541Cytochrome c assembly proteinPFAMPF01578Cytochrom_C_asmcoord: 39..116
score: 9.2
NoneNo IPR availablePANTHERPTHR30071HEME EXPORTER PROTEIN Ccoord: 30..117
score: 8.3
NoneNo IPR availablePANTHERPTHR30071:SF8CYTOCHROME C BIOGENESIS PROTEIN CCSAcoord: 30..117
score: 8.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012530Cucurbita pepo (Zucchini)cmacpeB150
CmaCh11G012530Silver-seed gourdcarcmaB0931
CmaCh11G012530Cucurbita maxima (Rimu)cmacmaB085
CmaCh11G012530Cucurbita moschata (Rifu)cmacmoB115