CmaCh11G012490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description60S ribosomal protein L39
LocationCma_Chr11 : 8308465 .. 8309372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATGGCAAGTGTTTCTTACTTGGGAAGTGATTTTTTATTTTTAATTTCTTCTGGTAATTTGTTTAGTTACCCAGATTGAAATCGATTTGGGAGGTTGTGTTTTGTGATGTGAGTTTCCTTTAATGTGCACAGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTCTTAAGCTCTTCTATTATAGTTTTTATTCGTATTTCATCATTTCTATTCTTATCAGTTTTAAATGTAACGCGGCATTTTGATGTATTCTGCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGATGTTAGTTGTGGAGAAGACAAAGGATAGATGTTTGAACTTTTTTGCCCCTCAATTTAAGAACTTGTGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATTTTCAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACATTTCATTACTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATACTCATGTGGATGAGCTGAGCTGAGCTGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCGGATTCATGTATTTCGTAGTGAACTTTGTTATATGACAGCTATTTGCAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGCAAATTTTGTTTTAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCCG

mRNA sequence

AGATGGCAAGTGTTTCTTACTTGGGAAGTGATTTTTTATTTTTAATTTCTTCTGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGAGGTGTTCCTCTTGTGATTTGCTCTTCATCCTGTTTTGAACCTATTTAAGTGTTATGATGTTAGTTGTGGAGAAGACAAAGGATAGATGTTTGAACTTTTTTGCCCCTCAATTTAAGAACTTGTGGAATAGAAAATCATGTAGTCTTTAGGCTGGCATCTATTTTCAATCTATATCTGGAGTAATTTCAATTCTTAAGATAAATCTCGTGTTCATTTTGTTTAATTTCTATCACATTTCATTACTGGTACCCCAGTTTGGAATTTTATTCTGATCTTAATTGCTCAAATACTCATGTGGATGAGCTGAGCTGAGCTGAGCTGGGTGTCTACATTTCTGTTGCTTTACAAATTGTTCTTCGGATTCATGTATTTCGTAGTGAACTTTGTTATATGACAGCTATTTGCAAGTGTTTTCTAAAACTATGTAATTGGTGTTAATTTTTGTAACTGTCGCAAATTTTGTTTTAATAGGGTTTTGTTAAAACTATTTGTAATTTGTATGGTGAAAATTAATATATAAATTCCCG

Coding sequence (CDS)

ATGAGACAGAACAGGCCCATTCCTCACTGGATCCGCTTGAGGACCGACAATACCATCAGGTATAATGCGAAACGAAGGCACTGGCGCCGCACCAAGCTTGGATTTTGA

Protein sequence

MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
[Close]
BLAST of CmaCh11G012490 vs. Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. Swiss-Prot
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. Swiss-Prot
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. Swiss-Prot
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-14
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. TrEMBL
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. TrEMBL
Match: R0FYV5_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10024445mg PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 43 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 77

[Close]
BLAST of CmaCh11G012490 vs. TrEMBL
Match: D7LK63_ARALL (60S ribosomal protein L39 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_901138 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. TrEMBL
Match: A0A078J798_BRANA (BnaC04g56360D protein OS=Brassica napus GN=BnaC04g56360D PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 44 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78

[Close]
BLAST of CmaCh11G012490 vs. TrEMBL
Match: A0A087GRT4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G262600 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. TAIR10
Match: AT2G25210.1 (AT2G25210.1 Ribosomal protein L39 family protein)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 10 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]
BLAST of CmaCh11G012490 vs. TAIR10
Match: AT4G31985.1 (AT4G31985.1 Ribosomal protein L39 family protein)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. TAIR10
Match: AT3G02190.1 (AT3G02190.1 Ribosomal protein L39 family protein)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. NCBI nr
Match: gi|645227824|ref|XP_008220702.1| (PREDICTED: 60S ribosomal protein L39-1 [Prunus mume])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. NCBI nr
Match: gi|18417922|ref|NP_567886.1| (60S ribosomal protein L39-1 [Arabidopsis thaliana])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. NCBI nr
Match: gi|297802832|ref|XP_002869300.1| (60S ribosomal protein L39 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CmaCh11G012490 vs. NCBI nr
Match: gi|703074930|ref|XP_010089945.1| (60S ribosomal protein L39 [Morus notabilis])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 20 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]
BLAST of CmaCh11G012490 vs. NCBI nr
Match: gi|449435607|ref|XP_004135586.1| (PREDICTED: 60S ribosomal protein L39 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 

Query: 1  MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 36
          MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

The following BLAST results are available for this feature:
BLAST of CmaCh11G012490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL391_ARATH9.0e-15100.0060S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2[more]
RL391_ORYSJ7.6e-1494.2960S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2[more]
RL392_ORYSJ7.6e-1494.2960S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2[more]
RL393_ORYSJ7.6e-1494.2960S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1[more]
RL39_MAIZE7.6e-1494.2960S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1[more]
BLAST of CmaCh11G012490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYE1_CUCSA1.0e-12100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568530 PE=3 SV=1[more]
R0FYV5_9BRAS1.0e-12100.00Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10024445mg PE=3... [more]
D7LK63_ARALL1.0e-12100.0060S ribosomal protein L39 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_9011... [more]
A0A078J798_BRANA1.0e-12100.00BnaC04g56360D protein OS=Brassica napus GN=BnaC04g56360D PE=3 SV=1[more]
A0A087GRT4_ARAAL1.0e-12100.00Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G262600 PE=3 SV=1[more]
BLAST of CmaCh11G012490 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25210.15.1e-16100.00 Ribosomal protein L39 family protein[more]
AT4G31985.15.1e-16100.00 Ribosomal protein L39 family protein[more]
AT3G02190.11.6e-1494.29 Ribosomal protein L39 family protein[more]
BLAST of CmaCh11G012490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|645227824|ref|XP_008220702.1|1.4e-12100.00PREDICTED: 60S ribosomal protein L39-1 [Prunus mume][more]
gi|18417922|ref|NP_567886.1|1.4e-12100.0060S ribosomal protein L39-1 [Arabidopsis thaliana][more]
gi|297802832|ref|XP_002869300.1|1.4e-12100.0060S ribosomal protein L39 [Arabidopsis lyrata subsp. lyrata][more]
gi|703074930|ref|XP_010089945.1|1.4e-12100.0060S ribosomal protein L39 [Morus notabilis][more]
gi|449435607|ref|XP_004135586.1|1.4e-12100.00PREDICTED: 60S ribosomal protein L39 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000077Ribosomal_L39
IPR020083Ribosomal_L39_CS
IPR023626Ribosomal_L39e_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006470 protein dephosphorylation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004722 protein serine/threonine phosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012490.1CmaCh11G012490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 1..35
score: 8.2
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 1..33
score: 4.0
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 14..30
scor
IPR023626Ribosomal protein L39e domainGENE3DG3DSA:1.10.1620.10coord: 1..35
score: 2.2
IPR023626Ribosomal protein L39e domainunknownSSF48662Ribosomal protein L39ecoord: 1..34
score: 1.22
NoneNo IPR availablePRODOMPD007914coord: 1..22
score: 3.
NoneNo IPR availablePANTHERPTHR19970:SF460S RIBOSOMAL PROTEIN L39-1-RELATEDcoord: 1..35
score: 8.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G012490Cucsa.051250Cucumber (Gy14) v1cgycmaB0056
CmaCh11G012490Csa1G568530Cucumber (Chinese Long) v2cmacuB109
CmaCh11G012490CSPI01G26020Wild cucumber (PI 183967)cmacpiB107
CmaCh11G012490MELO3C015269.2Melon (DHL92) v3.6.1cmamedB132
CmaCh11G012490CsaV3_1G038440Cucumber (Chinese Long) v3cmacucB0123
CmaCh11G012490Bhi02G001800Wax gourdcmawgoB0162
CmaCh11G012490CsGy1G025300Cucumber (Gy14) v2cgybcmaB053
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh11G012490CmaCh10G011480Cucurbita maxima (Rimu)cmacmaB085
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012490Watermelon (97103) v2cmawmbB113
CmaCh11G012490Cucurbita moschata (Rifu)cmacmoB115
CmaCh11G012490Watermelon (Charleston Gray)cmawcgB109
CmaCh11G012490Watermelon (97103) v1cmawmB095
CmaCh11G012490Cucurbita pepo (Zucchini)cmacpeB150