CmaCh11G012170 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionATP synthase subunit alpha, chloroplastic
LocationCma_Chr11 : 7734489 .. 7734824 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTATTCGTTTTGAACAACAAAAAGTGATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACGAGTTACATTTACGTACCATCAGTGCTAATATTGTCATTTCAAGCAAATGAAATTAGTAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTAGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTGA

mRNA sequence

ATGAAACTATTCGTTTTGAACAACAAAAATAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTAGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTGA

Coding sequence (CDS)

ATGAAACTATTCGTTTTGAACAACAAAAATAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTAGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTGA

Protein sequence

MKLFVLNNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN
Homology
[Close]
BLAST of CmaCh11G012170 vs. Swiss-Prot
Match: ATPA_OENPA (ATP synthase subunit alpha, chloroplastic OS=Oenothera parviflora GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. Swiss-Prot
Match: ATPA_POPAL (ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. Swiss-Prot
Match: ATPA_POPTR (ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TrEMBL
Match: A0A0S2IEL2_9ROSI (ATP synthase subunit alpha OS=Cucurbita ecuadorensis GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-20
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TrEMBL
Match: A0A0S2IG79_CUCMO (ATP synthase subunit alpha OS=Cucurbita moschata GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-20
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TrEMBL
Match: A0A0S2IH79_CUCPE (ATP synthase subunit alpha OS=Cucurbita pepo subsp. fraterna GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-20
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TrEMBL
Match: A0A0S2IED7_9ROSI (ATP synthase subunit alpha OS=Cucurbita cordata GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-20
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TrEMBL
Match: A0A0S2IEP2_9ROSI (ATP synthase subunit alpha OS=Cucurbita argyrosperma var. palmeri GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-20
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TAIR10
Match: ATCG00120.1 (ATCG00120.1 ATP synthase subunit alpha)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-21
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREV IVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. TAIR10
Match: AT2G07698.1 (AT2G07698.1 ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-06
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1 

Query: 11  NIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
           N+   RI  +    ++   G V+ VGD IA +YGL+E+ AG +V F  G  G+ALN
Sbjct: 282 NLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 337

[Close]
BLAST of CmaCh11G012170 vs. TAIR10
Match: ATMG01190.1 (ATMG01190.1 ATP synthase subunit 1)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-06
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1 

Query: 11 NIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          N+   RI  +    ++   G V+ VGD IA +YGL+E+ AG +V F  G  G+ALN
Sbjct: 12 NLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 67

[Close]
BLAST of CmaCh11G012170 vs. NCBI nr
Match: gi|952954543|gb|ALO21904.1| (AtpA (plastid) [Cucurbita cordata])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. NCBI nr
Match: gi|952954380|gb|ALO21744.1| (AtpA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. NCBI nr
Match: gi|952955021|gb|ALO22375.1| (AtpA (plastid) [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. NCBI nr
Match: gi|952954674|gb|ALO22033.1| (AtpA (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]
BLAST of CmaCh11G012170 vs. NCBI nr
Match: gi|952954756|gb|ALO22114.1| (AtpA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

The following BLAST results are available for this feature:
BLAST of CmaCh11G012170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATPA_OENPA5.5e-2191.23ATP synthase subunit alpha, chloroplastic OS=Oenothera parviflora GN=atpA PE=3 S... [more]
ATPA_MANES5.5e-2191.23ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1[more]
ATPA_POPAL5.5e-2191.23ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1[more]
ATPA_EUCGG5.5e-2191.23ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
ATPA_POPTR5.5e-2191.23ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa GN=atpA PE=3 SV... [more]
BLAST of CmaCh11G012170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IEL2_9ROSI9.4e-2090.00ATP synthase subunit alpha OS=Cucurbita ecuadorensis GN=atpA PE=3 SV=1[more]
A0A0S2IG79_CUCMO9.4e-2090.00ATP synthase subunit alpha OS=Cucurbita moschata GN=atpA PE=3 SV=1[more]
A0A0S2IH79_CUCPE9.4e-2090.00ATP synthase subunit alpha OS=Cucurbita pepo subsp. fraterna GN=atpA PE=3 SV=1[more]
A0A0S2IED7_9ROSI9.4e-2090.00ATP synthase subunit alpha OS=Cucurbita cordata GN=atpA PE=3 SV=1[more]
A0A0S2IEP2_9ROSI9.4e-2090.00ATP synthase subunit alpha OS=Cucurbita argyrosperma var. palmeri GN=atpA PE=3 S... [more]
BLAST of CmaCh11G012170 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00120.11.5e-2189.47ATCG00120.1 ATP synthase subunit alpha[more]
AT2G07698.11.4e-0641.07 ATPase, F1 complex, alpha subunit protein[more]
ATMG01190.11.4e-0641.07ATMG01190.1 ATP synthase subunit 1[more]
BLAST of CmaCh11G012170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954543|gb|ALO21904.1|1.3e-1990.00AtpA (plastid) [Cucurbita cordata][more]
gi|952954380|gb|ALO21744.1|1.3e-1990.00AtpA (plastid) [Cucurbita argyrosperma][more]
gi|952955021|gb|ALO22375.1|1.3e-1990.00AtpA (plastid) [Cucurbita moschata][more]
gi|952954674|gb|ALO22033.1|1.3e-1990.00AtpA (plastid) [Cucurbita ecuadorensis][more]
gi|952954756|gb|ALO22114.1|1.3e-1990.00AtpA (plastid) [Cucurbita ficifolia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004100ATPase_F1/V1/A1_a/bsu_N
IPR023366ATP_synth_asu-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015992proton transport
GO:0046034ATP metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015992 proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012170.1CmaCh11G012170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 29..66
score: 1.
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainunknownSSF50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 11..66
score: 8.11
IPR023366ATP synthase subunit alpha-like domainGENE3DG3DSA:2.40.30.20coord: 10..66
score: 5.8
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor
NoneNo IPR availablePANTHERPTHR15184ATP SYNTHASEcoord: 1..66
score: 7.9
NoneNo IPR availablePANTHERPTHR15184:SF42ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTICcoord: 1..66
score: 7.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012170Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012170Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012170Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012170Melon (DHL92) v3.5.1cmameB108
CmaCh11G012170Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012170Watermelon (97103) v1cmawmB101
CmaCh11G012170Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012170Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012170Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012170Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012170Watermelon (97103) v2cmawmbB117
CmaCh11G012170Wax gourdcmawgoB0171