CmaCh11G012100 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012100
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S2, chloroplastic
LocationCma_Chr11 : 7334205 .. 7335361 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAATGTCTAATGTTCACTTGGCGAACTCATTGGATTGTTGCCGGCGGAACGAACAGCAGGGCATGCTTTGGAAGAATCTGTTACCGACCCCCTATTATTTGGAATAACAAAAGCATCTATAAATACTCAACCAACAAGAATATCGGAAGCAAGAAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGTATCGATTGGGTGAGAGGTCAGAAAGAGAACTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAAACCCCCTAAACAAATTAGTCGAGGGCGAGAGAGATTTTGTTCCACCACAAACAATTATTGCATTTTTGCATTTCAACGAATTTACATGATAGATCAGAACAAGCATTTCTAGGATTTCATTCTTTCTCAAAGTAGAGGCATCCTGTTAACTAGCCGCCCCGCGTTGATTTGGTAGTAATAAATCAGATAATAACGAATATAAAAAAATGAATGGCTTGGATCGTGTATCGTGTATCAACAGTCACTCCCCGGCAGAGGTAGAGGATAAGAAGGTTCCATGGGAACAATTATTTTTTTCTATTTCAGCTCGGCTCCTTTTTGTTTCTTAAAAAAAACGAGCGAGGAAGTGGGGGGAGAAATGACAGACAAGAGGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTAGTTCAGTTTCCTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTAGATATATCTCCACAAAACGTAAAGGGATGAATATTCTAAATCTTACCTTACTAGAACTGTTAGTTTTTTATCAGAAGCTTGTGATTTCGTTTTTGATGCAGCAAGTAGGGGCAGGACAAACAATTCCTCATTGTTGGTACCAAAAAGAAGCGGATTTAGTAGCCTGGGCTGCAACAAGGGCTCGGTGGCATTATGTTAATACAAAAATGCTCGGGGGGATGTTAACAAATTAGTCTACTACCGAAACGAAACCGAATAAGTTCAGGGACTTGAGAACGAAACAAACGGCGGGGGGACTCAACCAACCGTCTTCCGAAAAGGGATGCCCCTATCTTGAAGAGCCAATTATCTCACTTGCAAACATATCTATCTGGGCGGGA

mRNA sequence

AAGAATGTCTAATGTTCACTTGGCGAACTCATTGGATTGTTGCCGGCGGAACGAACAGCAGGGCATGCTTTGGAAGAATCTGTTACCGACCCCCTATTATTTGGAATAACAAAAGCATCTATAAATACTCAACCAACAAGAATATCGGAAGCAAGAAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAAAGCTTGTGATTTCGTTTTTGATGCAGCAAGTAGGGGCAGGACAAACAATTCCTCATTGTTGGTACCAAAAAGAAGCGGATTTAGTAGCCTGGGCTGCAACAAGGGCTCGGTGGCATTATTCTACTACCGAAACGAAACCGAATAAGTTCAGGGACTTGAGAACGAAACAAACGGCGGGGGGACTCAACCAACCGTCTTCCGAAAAGGGATGCCCCTATCTTGAAGAGCCAATTATCTCACTTGCAAACATATCTATCTGGGCGGGA

Coding sequence (CDS)

ATGTTCACTTGGCGAACTCATTGGATTGTTGCCGGCGGAACGAACAGCAGGGCATGCTTTGGAAGAATCTGTTACCGACCCCCTATTATTTGGAATAACAAAAGCATCTATAAATACTCAACCAACAAGAATATCGGAAGCAAGAAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAAAGCTTGTGATTTCGTTTTTGATGCAGCAAGTAGGGGCAGGACAAACAATTCCTCATTGTTGGTACCAAAAAGAAGCGGATTTAGTAGCCTGGGCTGCAACAAGGGCTCGGTGGCATTATTCTACTACCGAAACGAAACCGAATAAGTTCAGGGACTTGAGAACGAAACAAACGGCGGGGGGACTCAACCAACCGTCTTCCGAAAAGGGATGCCCCTATCTTGAAGAGCCAATTATCTCACTTGCAAACATATCTATCTGGGCGGGA

Protein sequence

MFTWRTHWIVAGGTNSRACFGRICYRPPIIWNNKSIYKYSTNKNIGSKKETARVLAKAALRKLVISFLMQQVGAGQTIPHCWYQKEADLVAWAATRARWHYSTTETKPNKFRDLRTKQTAGGLNQPSSEKGCPYLEEPIISLANISIWAG
Homology
[Close]
BLAST of CmaCh11G012100 vs. Swiss-Prot
Match: RR2_GUIAB (30S ribosomal protein S2, chloroplastic OS=Guizotia abyssinica GN=rps2 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-07
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 1 

Query: 85  KEADLVAWAATRARWHY-------------STTETKPNKFRDLRTKQTAGGLNQ 126
           KEAD VAWAA RAR HY             STTET+ +KFRDLRT+Q  GGLN+
Sbjct: 79  KEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNR 132

[Close]
BLAST of CmaCh11G012100 vs. Swiss-Prot
Match: RR2_HELAN (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus GN=rps2 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 

Query: 85  KEADLVAWAATRARWHY-------------STTETKPNKFRDLRTKQTAGGLNQ 126
           KEAD VAWAA RAR HY             STTET+ +KFRDLRT+Q  GGL++
Sbjct: 79  KEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLSR 132

[Close]
BLAST of CmaCh11G012100 vs. Swiss-Prot
Match: RR2_LACSA (30S ribosomal protein S2, chloroplastic OS=Lactuca sativa GN=rps2 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 

Query: 85  KEADLVAWAATRARWHY-------------STTETKPNKFRDLRTKQTAGGLNQ 126
           KEAD VAWAA RAR HY             STTET+ +KFRDLRT+Q  GGL++
Sbjct: 79  KEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLDR 132

The following BLAST results are available for this feature:
BLAST of CmaCh11G012100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR2_GUIAB3.5e-0757.4130S ribosomal protein S2, chloroplastic OS=Guizotia abyssinica GN=rps2 PE=3 SV=1[more]
RR2_HELAN1.3e-0655.5630S ribosomal protein S2, chloroplastic OS=Helianthus annuus GN=rps2 PE=3 SV=1[more]
RR2_LACSA1.3e-0655.5630S ribosomal protein S2, chloroplastic OS=Lactuca sativa GN=rps2 PE=3 SV=1[more]
BLAST of CmaCh11G012100 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh11G012100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh11G012100 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043229 intracellular organelle
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012100.1CmaCh11G012100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012100Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012100Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012100Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012100Melon (DHL92) v3.5.1cmameB108
CmaCh11G012100Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012100Watermelon (97103) v1cmawmB101
CmaCh11G012100Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012100Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012100Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012100Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012100Watermelon (97103) v2cmawmbB117
CmaCh11G012100Wax gourdcmawgoB0171