CmaCh11G012090 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S2, chloroplastic
LocationCma_Chr11 : 7333647 .. 7334196 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGGTTAGGTTACCCGATATTGTAATAATCCTTGATCAACAAGAAGAATATCAGGCTCTGAAAGAATGTATCACGCTGGGAATTCCAACTAGTTGTTTAATTGATACAAATGGTGACCCGGATCTCATATTTCGATTCCAGCAAATGATGATGCCTGAAATCCGATTCATTATTCATAAGAAGATCAATCAATTTTGGGGGGAACTCCATAGAGTTAGGGCAGGGAATTGCTTACTATTCCCGAATCGCACAAAAGAGATCAAAAACTAGGGTAGGGATATTGTAATGTAATCAATTGATATCAAAAATAGACAACTCAAGGCAAGGGCAGGCAGTCGAAGGAAGACAGTCAAATCAAATTCCTTTACAATTCTATTTCTTTCAGAGGGAAATATTCATACTCATTCTATTATGTTCTATCAACACACACAAAGAAAGGAAGGGGTTATAAAATATATCCGGTGTGGAAGTCGGCCTTTGTATTGGCAAATAGGAAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACGTCTTCGGTTGTAA

mRNA sequence

ATGACAGGGTTACCCGATATTGTAATAATCCTTGATCAACAAGAAGAATATCAGGCTCTGAAAGAATGTATCACGCTGGGAATTCCAACTAGTTGTTTAATTGATACAAATGGTGACCCGGATCTCATATTTCGATTCCAGCAAATGATGATGCCTGAAATCCGATTCATTATTCATAAGAAGATCAATCAATTTTGGGGGGAACTCCATAGAAAAGGAAGGGGTTATAAAATATATCCGGTGTGGAAGTCGGCCTTTGTATTGGCAAATAGGAAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACGTCTTCGGTTGTAA

Coding sequence (CDS)

ATGACAGGGTTACCCGATATTGTAATAATCCTTGATCAACAAGAAGAATATCAGGCTCTGAAAGAATGTATCACGCTGGGAATTCCAACTAGTTGTTTAATTGATACAAATGGTGACCCGGATCTCATATTTCGATTCCAGCAAATGATGATGCCTGAAATCCGATTCATTATTCATAAGAAGATCAATCAATTTTGGGGGGAACTCCATAGAAAAGGAAGGGGTTATAAAATATATCCGGTGTGGAAGTCGGCCTTTGTATTGGCAAATAGGAAGGAGGTTTCCAAGTACATGCCCAAGTACTTATTACGTCTTCGGTTGTAA

Protein sequence

MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLIFRFQQMMMPEIRFIIHKKINQFWGELHRKGRGYKIYPVWKSAFVLANRKEVSKYMPKYLLRLRL
Homology
[Close]
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_NANDO (30S ribosomal protein S2, chloroplastic OS=Nandina domestica GN=rps2 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+EC+TLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 158 MTGLPDIVIIVDQQEEYTALRECVTLGIPTICLIDTNCDPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKIN 64
           ++K ++
Sbjct: 218 LNKLVS 223

[Close]
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_CERDE (30S ribosomal protein S2, chloroplastic OS=Ceratophyllum demersum GN=rps2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.6e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDL 43
           MTGLPDIVII+DQQEEY AL+EC+TLGIPT CLIDTN DPDL
Sbjct: 158 MTGLPDIVIIVDQQEEYTALRECVTLGIPTICLIDTNSDPDL 199

[Close]
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_CUCSA (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDL 43
           MTGLPDIVII+DQQEEY+AL+ECITLGIPT CLIDTN DPDL
Sbjct: 158 MTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDL 199

[Close]
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_OENAR (30S ribosomal protein S2, chloroplastic OS=Oenothera argillicola GN=rps2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-15
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQQEEY AL+ECITLGIPT CLIDT+ DPDL           M  IR I
Sbjct: 158 MTGLPDIVIILDQQEEYTALRECITLGIPTICLIDTDCDPDLADLPIPANDDAMASIRLI 217

Query: 61  IHKKI 63
           ++K +
Sbjct: 218 LNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match: RR2_OENPA (30S ribosomal protein S2, chloroplastic OS=Oenothera parviflora GN=rps2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-15
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQQEEY AL+ECITLGIPT CLIDT+ DPDL           M  IR I
Sbjct: 158 MTGLPDIVIILDQQEEYTALRECITLGIPTICLIDTDCDPDLADLPIPANDDAMASIRLI 217

Query: 61  IHKKI 63
           ++K +
Sbjct: 218 LNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A0M4BNJ2_9LAMI (30S ribosomal protein S2, chloroplastic OS=Tanaecium tetragonolobum GN=rps2 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQ EEY+AL+ECITLGIPT CLIDTNGDPDL         + +  IR I
Sbjct: 159 MTGLPDIVIILDQHEEYKALRECITLGIPTICLIDTNGDPDLADISIPANSLGISSIRLI 218

Query: 61  IHKKINQFW 67
           + K +   W
Sbjct: 219 LKKLVFAIW 227

[Close]
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A023T1S9_9ROSI (30S ribosomal protein S2, chloroplastic OS=Licania sprucei GN=rps2 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-14
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQQEEY AL+EC+TLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 158 MTGLPDIVIILDQQEEYTALRECLTLGIPTICLIDTNSDPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKI 63
           ++K I
Sbjct: 218 LNKLI 222

[Close]
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A0K0LX78_9FABA (Ribosomal protein S2 OS=Lathyrus decaphyllus GN=rps2 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+ECITLGIPT CLIDTN DPDL           M  IRFI
Sbjct: 158 MTGLPDIVIIVDQQEEYTALQECITLGIPTICLIDTNCDPDLADFSIPANDDAMDSIRFI 217

Query: 61  IHKKI 63
           ++K +
Sbjct: 218 LNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A109RUJ7_9ROSI (30S ribosomal protein S2, chloroplastic OS=Viola pedatifida GN=rps2 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+ECITLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 158 MTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNSDPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKI 63
            +K +
Sbjct: 218 FNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. TrEMBL
Match: A0A0F6T3T8_9ROSI (Ribosomal protein S2 OS=Viola seoulensis GN=rps2 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+ECITLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 158 MTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNSDPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKI 63
            +K +
Sbjct: 218 FNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. TAIR10
Match: ATCG00160.1 (ATCG00160.1 ribosomal protein S2)

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-15
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQQEEY AL+ECITLGIPT  LIDTN +PDL           +  IRFI
Sbjct: 158 MTGLPDIVIILDQQEEYTALRECITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKI 63
           ++K +
Sbjct: 218 LNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|937408499|ref|YP_009166680.1| (ribosomal protein S2 (chloroplast) [Tanaecium tetragonolobum])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQ EEY+AL+ECITLGIPT CLIDTNGDPDL         + +  IR I
Sbjct: 159 MTGLPDIVIILDQHEEYKALRECITLGIPTICLIDTNGDPDLADISIPANSLGISSIRLI 218

Query: 61  IHKKINQFW 67
           + K +   W
Sbjct: 219 LKKLVFAIW 227

[Close]
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|630716453|ref|YP_009028291.1| (ribosomal protein S2 (chloroplast) (chloroplast) [Licania sprucei])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVIILDQQEEY AL+EC+TLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 158 MTGLPDIVIILDQQEEYTALRECLTLGIPTICLIDTNSDPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKI 63
           ++K I
Sbjct: 218 LNKLI 222

[Close]
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|748992472|gb|AJE72894.1| (ribosomal protein S2 (plastid) [Lathyrus decaphyllus])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+ECITLGIPT CLIDTN DPDL           M  IRFI
Sbjct: 158 MTGLPDIVIIVDQQEEYTALQECITLGIPTICLIDTNCDPDLADFSIPANDDAMDSIRFI 217

Query: 61  IHKKI 63
           ++K +
Sbjct: 218 LNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|984914327|gb|AMC32592.1| (ribosomal protein S2 (chloroplast) [Viola bicolor])

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+ECITLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 158 MTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNSDPDLADISIPANDDAIASIRFI 217

Query: 61  IHKKI 63
            +K +
Sbjct: 218 FNKLV 222

[Close]
BLAST of CmaCh11G012090 vs. NCBI nr
Match: gi|408901090|gb|AFU95295.1| (Rps2, partial (chloroplast) [Viola pubescens])

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1   MTGLPDIVIILDQQEEYQALKECITLGIPTSCLIDTNGDPDLI---FRFQQMMMPEIRFI 60
           MTGLPDIVII+DQQEEY AL+ECITLGIPT CLIDTN DPDL           +  IRFI
Sbjct: 165 MTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNSDPDLADISIPANDDAIASIRFI 224

Query: 61  IHKKI 63
            +K +
Sbjct: 225 FNKLV 229

The following BLAST results are available for this feature:
BLAST of CmaCh11G012090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR2_NANDO1.9e-1562.1230S ribosomal protein S2, chloroplastic OS=Nandina domestica GN=rps2 PE=3 SV=1[more]
RR2_CERDE5.6e-1585.7130S ribosomal protein S2, chloroplastic OS=Ceratophyllum demersum GN=rps2 PE=3 S... [more]
RR2_CUCSA7.3e-1588.1030S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1[more]
RR2_OENAR7.3e-1564.6230S ribosomal protein S2, chloroplastic OS=Oenothera argillicola GN=rps2 PE=3 SV... [more]
RR2_OENPA7.3e-1564.6230S ribosomal protein S2, chloroplastic OS=Oenothera parviflora GN=rps2 PE=3 SV=... [more]
BLAST of CmaCh11G012090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0M4BNJ2_9LAMI1.5e-1462.3230S ribosomal protein S2, chloroplastic OS=Tanaecium tetragonolobum GN=rps2 PE=3... [more]
A0A023T1S9_9ROSI7.3e-1466.1530S ribosomal protein S2, chloroplastic OS=Licania sprucei GN=rps2 PE=3 SV=1[more]
A0A0K0LX78_9FABA1.2e-1366.15Ribosomal protein S2 OS=Lathyrus decaphyllus GN=rps2 PE=3 SV=1[more]
A0A109RUJ7_9ROSI2.1e-1364.6230S ribosomal protein S2, chloroplastic OS=Viola pedatifida GN=rps2 PE=3 SV=1[more]
A0A0F6T3T8_9ROSI2.1e-1364.62Ribosomal protein S2 OS=Viola seoulensis GN=rps2 PE=3 SV=1[more]
BLAST of CmaCh11G012090 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00160.13.5e-1563.08ATCG00160.1 ribosomal protein S2[more]
BLAST of CmaCh11G012090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937408499|ref|YP_009166680.1|2.1e-1462.32ribosomal protein S2 (chloroplast) [Tanaecium tetragonolobum][more]
gi|630716453|ref|YP_009028291.1|1.1e-1366.15ribosomal protein S2 (chloroplast) (chloroplast) [Licania sprucei][more]
gi|748992472|gb|AJE72894.1|1.8e-1366.15ribosomal protein S2 (plastid) [Lathyrus decaphyllus][more]
gi|984914327|gb|AMC32592.1|3.1e-1364.62ribosomal protein S2 (chloroplast) [Viola bicolor][more]
gi|408901090|gb|AFU95295.1|3.1e-1364.62Rps2, partial (chloroplast) [Viola pubescens][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR005706Ribosomal_S2_bac/mit/plastid
IPR018130Ribosomal_S2_CS
IPR023591Ribosomal_S2_flav_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009536 plastid
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012090.1CmaCh11G012090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 22..33
score: 1.9E-6coord: 5..22
score: 1.
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 1..43
score: 1.4
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 1..43
score: 9.0
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00963RIBOSOMAL_S2_2coord: 5..29
scor
IPR023591Ribosomal protein S2, flavodoxin-like domainunknownSSF52313Ribosomal protein S2coord: 1..43
score: 1.19
NoneNo IPR availableGENE3DG3DSA:3.40.50.10490coord: 4..43
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012090Watermelon (97103) v2cmawmbB117
CmaCh11G012090Wax gourdcmawgoB0171
CmaCh11G012090Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012090Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012090Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012090Melon (DHL92) v3.5.1cmameB108
CmaCh11G012090Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012090Watermelon (97103) v1cmawmB101
CmaCh11G012090Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012090Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012090Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012090Cucumber (Chinese Long) v3cmacucB0120