CmaCh11G012070 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibulose bisphosphate carboxylase large chain
LocationCma_Chr11 : 7299800 .. 7300046 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGTGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGTCGTAGCTATCCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAGGTAATGAAATTATCCGTGAGGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGGAAGGCAATCAAATTCTAA

mRNA sequence

ATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGTGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGTCGTAGCTATCCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGGAAGGCAATCAAATTCTAA

Coding sequence (CDS)

ATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACTCCAATTCGGTGGAGGAACTTTGGGGCTGGGGGGAATGCACCAGGTGTCGTAGCTATCCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGGAAGGCAATCAAATTCTAA

Protein sequence

MPALTEMEMIPYYTPIRWRNFGAGGNAPGVVAIRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKAIKF
Homology
[Close]
BLAST of CmaCh11G012070 vs. Swiss-Prot
Match: RBL_GOSBA (Ribulose bisphosphate carboxylase large chain OS=Gossypium barbadense GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.8e-25
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. Swiss-Prot
Match: RBL_CAJCA (Ribulose bisphosphate carboxylase large chain OS=Cajanus cajan GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.8e-25
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. Swiss-Prot
Match: RBL_VISAL (Ribulose bisphosphate carboxylase large chain OS=Viscum album GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.8e-25
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. Swiss-Prot
Match: RBL_DRYSU (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Drymophloeus subdistichus GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.8e-25
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. Swiss-Prot
Match: RBL_THEPO (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Thespesia populnea GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.8e-25
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 378 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 437

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 438 NEIIREASKWSPELAAACEVWKAIKF 458

[Close]
BLAST of CmaCh11G012070 vs. TrEMBL
Match: Q8MDB4_9ARAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Amorphophallus canaliculatus GN=rbcL PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 384 MPALTEI-----FGDDSXLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 443

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 444 NEIIREASKWSPELAAACEVWKAIKF 464

[Close]
BLAST of CmaCh11G012070 vs. TrEMBL
Match: Q8MD74_9ARAE (Ribulose bisphosphate carboxylase large chain OS=Pseudodracontium harmandii GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. TrEMBL
Match: Q8WKF3_9FABA (Ribulose 1,5-bisphosphate carboxylase-oxygenase large subunit (Fragment) OS=Kennedia rubicunda GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 377 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 436

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 437 NEIIREASKWSPELAAACEVWKAIKF 457

[Close]
BLAST of CmaCh11G012070 vs. TrEMBL
Match: I6M080_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Gossypium somalense GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. TrEMBL
Match: Q3T5C3_9ROSI (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Ditaxis argothamnoides GN=rbcL PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 377 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 436

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 437 NEIIREASKWSPELAAACEVWKAIKF 457

[Close]
BLAST of CmaCh11G012070 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-23
Identity = 59/86 (68.60%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLA EG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAVEG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREA KWSPELAAACEVWK I F
Sbjct: 447 NEIIREACKWSPELAAACEVWKEITF 467

[Close]
BLAST of CmaCh11G012070 vs. NCBI nr
Match: gi|21667531|gb|AAM74090.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Amorphophallus canaliculatus])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 384 MPALTEI-----FGDDSXLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 443

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 444 NEIIREASKWSPELAAACEVWKAIKF 464

[Close]
BLAST of CmaCh11G012070 vs. NCBI nr
Match: gi|63259356|gb|AAY40336.1| (ribulose-1,5-biphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Amorphophallus interruptus])

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 375 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 434

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 435 NEIIREASKWSPELAAACEVWKAIKF 455

[Close]
BLAST of CmaCh11G012070 vs. NCBI nr
Match: gi|937637048|gb|ALI92104.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Discophora guianensis])

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 387 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 446

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 447 NEIIREASKWSPELAAACEVWKAIKF 467

[Close]
BLAST of CmaCh11G012070 vs. NCBI nr
Match: gi|449326713|gb|AGE93292.1| (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Chamaedorea seifrizii])

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 394 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 453

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 454 NEIIREASKWSPELAAACEVWKAIKF 474

[Close]
BLAST of CmaCh11G012070 vs. NCBI nr
Match: gi|471935|gb|AAA84358.1| (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Luffa quinquefida])

HSP 1 Score: 114.4 bits (285), Expect = 9.3e-23
Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 1 

Query: 1   MPALTEMEMIPYYTPIRWRNFGAG------GNAPGVVAIRVALEACVQARNEGRDLAREG 60
           MPALTE+     +       FG G      GNAPG VA RVALEACVQARNEGRDLAREG
Sbjct: 378 MPALTEI-----FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREG 437

Query: 61  NEIIREASKWSPELAAACEVWKAIKF 81
           NEIIREASKWSPELAAACEVWKAIKF
Sbjct: 438 NEIIREASKWSPELAAACEVWKAIKF 458

The following BLAST results are available for this feature:
BLAST of CmaCh11G012070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBL_GOSBA5.8e-2573.26Ribulose bisphosphate carboxylase large chain OS=Gossypium barbadense GN=rbcL PE... [more]
RBL_CAJCA5.8e-2573.26Ribulose bisphosphate carboxylase large chain OS=Cajanus cajan GN=rbcL PE=3 SV=1[more]
RBL_VISAL5.8e-2573.26Ribulose bisphosphate carboxylase large chain OS=Viscum album GN=rbcL PE=3 SV=1[more]
RBL_DRYSU5.8e-2573.26Ribulose bisphosphate carboxylase large chain (Fragment) OS=Drymophloeus subdist... [more]
RBL_THEPO5.8e-2573.26Ribulose bisphosphate carboxylase large chain (Fragment) OS=Thespesia populnea G... [more]
BLAST of CmaCh11G012070 vs. TrEMBL
Match NameE-valueIdentityDescription
Q8MDB4_9ARAE3.8e-2373.26Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Amor... [more]
Q8MD74_9ARAE6.4e-2373.26Ribulose bisphosphate carboxylase large chain OS=Pseudodracontium harmandii GN=r... [more]
Q8WKF3_9FABA6.4e-2373.26Ribulose 1,5-bisphosphate carboxylase-oxygenase large subunit (Fragment) OS=Kenn... [more]
I6M080_9ROSI6.4e-2373.26Ribulose bisphosphate carboxylase large chain OS=Gossypium somalense GN=rbcL PE=... [more]
Q3T5C3_9ROSI6.4e-2373.26Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Dita... [more]
BLAST of CmaCh11G012070 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00490.12.0e-2368.60ATCG00490.1 ribulose-bisphosphate carboxylases[more]
BLAST of CmaCh11G012070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|21667531|gb|AAM74090.1|5.4e-2373.26ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl... [more]
gi|63259356|gb|AAY40336.1|9.3e-2373.26ribulose-1,5-biphosphate carboxylase/oxygenase large subunit, partial (chloropla... [more]
gi|937637048|gb|ALI92104.1|9.3e-2373.26ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl... [more]
gi|449326713|gb|AGE93292.1|9.3e-2373.26ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Chamaedorea seifr... [more]
gi|471935|gb|AAA84358.1|9.3e-2373.26ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Luffa quinquefida... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000685RuBisCO_lsu_C
Vocabulary: Molecular Function
TermDefinition
GO:0000287magnesium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0009536 plastid
molecular_function GO:0000287 magnesium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012070.1CmaCh11G012070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalGENE3DG3DSA:3.20.20.110coord: 24..75
score: 2.9
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 25..75
score: 7.
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalunknownSSF51649RuBisCo, C-terminal domaincoord: 24..79
score: 5.89
NoneNo IPR availablePANTHERPTHR23321RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLARcoord: 25..68
score: 3.9
NoneNo IPR availablePANTHERPTHR23321:SF31RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATEDcoord: 25..68
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012070Wax gourdcmawgoB0171
CmaCh11G012070Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012070Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012070Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012070Melon (DHL92) v3.5.1cmameB108
CmaCh11G012070Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012070Watermelon (97103) v1cmawmB101
CmaCh11G012070Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012070Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012070Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012070Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012070Watermelon (97103) v2cmawmbB117