CmaCh11G012060 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChloroplast envelope membrane protein
LocationCma_Chr11 : 7294068 .. 7299116 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAAACATTCCTAGTCATAGTGACAATTCTAGTTACAGTACCGTTGATGATTTAGTCGGCCGACATTCGGTCGGATCTGATGACACTTTTTTAATTAGGGATAGTAATAGCAGCAGTCATTCCATTTGGATAGTGAAAGAGAGAGAGACTATGATCGTTACATGGATGATACTATATATATATATAGTTTAATTGGAATAATCACATTAATAGTTGCATTGACAGTTATCTTCAGGCTCAAATCTGTATTGATAGTGACTTTTTAAGTGGTAGTCACAATTAGAGTGACAGTTACGTTTATAGTGACATTTGTGGCTCAGGTGCAAATAGTAGTGAAAGTGAGAGTTCCAATATAAGAACTAGCACGGATGGAAGTGATTTAACTAGAATGGAGAGTTCTACGGAAAGTGATACGTCAAGTTCTACGGAAAGTTCTAATGATCTAGATGGAACTCAAACAAGCATTTGTGGGTTCAATGCGCAAATTGTTATGGATTCAATTATAAGAAGGATTTGAAATAAAAAATGAATATTTGTGAACAATGTGGATACCATTTGAAAATGAGTAGTTCAGATAGAATCGAACTTTTGATTGATCCAGCCAGGTACTTGGGACCCTATGGATGAAGACATGGTCTCTTTAGATCCCATTGAATTTCATTCGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAGGATTAACTAACTGAGGCTATTCAAAGAGGCACAGGTAAATGAAACGGTATTACTATAGCAATTGGGATTATGGATTTTTCGTTTATGGGGGTGGGATCTGTAGTAGGCGAGAGAATCACCCGTTTGATCGAGTATGCTACAAATCAATCAATTTTGACCTCTGATTTGAGTGTGTGCTTCTGGAGGAGCACGCATGCAAGAAGGAAGGAAGTGTGAGCTTGATGCAAATGTCAAAAAGATCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGTAGCAATCCTTACATCTCCTACTACTGGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCGCATTTGCGGGTAAAAGAGTAGTTTCTTGAACATTGATTGAATACGACAGTCCGGAGGGTTCCTAGGTGGCTGACGTTCGATAAGGGCTTATTCGATCTAAACCACGTAATCCTTTAAAAGGTGTTTGAGTGAGTTATTTCAGCTCCACGCTTTCGTTTCCTCGAATCAAAATTCAATCAAGTCAAACCTTACTTAAAACTCTTCCAAAATTCATTCTCAGTATTTGTAACGAACAAGTAGTTATTTAGTTTATAAGAATCAAAGTCAAAATTCGCAGAATGGATTTTTCTTTGGTAACATAAGATGAAATTGTAGAAAGAATCATGCGGAGAAATGGGTTTGACCGATATTCCTGATTAGTAATTAGGAAGTCCCTATTAAATAAAAGAGCAAATTCTTTCTTCCGCTAAATTAGGCGCGAATAAAATGAATGAATTTCATGCTCCCTTCTTACATTACTCTTCTTACATTACATGTGGATATATAATCCAACTATAGCAAATAGCGGGATAGAGTCTTGCATCTTTCTACATCTCTAGAGGATCTCTAGTTTGACTACGATTCCCTGTTGTTGGATCGGATTATAACGAACTTTTGGGTAGCAAGTAGATATTACTTAGTGGAATTCTATATGAATTAGTATAATTATCAGATAGCTTTAATAAAAAGAAATAAATAACAGGTAAATTAATATAACAAGAAATAACAGGTCAAAATATTAAGTCGAGGTATCCATTCTATGACAAACTTACCCTCTCTCTACTTTTGTGCCTTTAGTAGGCCTAGTATTTCCGGCCATTGCAATGGCTTCTTTATCTCTTCATGTTAAAAAAAACAAGATTATTTATGCTACACGTCTATTTGTTTTTTTCAAAACTTAGACTTTGACGATAACACAACTATCTATTTAGTAGACGGCAGTCTAACATGTGGCTGACTCCAAACATAAGCGATTATACATGCGTAAACATGATATATGAGGAAATGAATTAGAAAGTCTTTGAAAATCTCCAATATATAACAGATCGGGCGACGAATGGTTGAGATGTCAAATCAATATATCTATATGGATGTAGGTATCCATAGGGAATCATATAAAGGTGATGTTATTATTTGAGATCTAAATAATTCGATGAGTTACTCCGTCAGTCAAGGTTCACATCAAAATAGTGCTAGTTGATTAGAATTACTTTGGAAACAAAAAAAGTCAAATATCCGAGTTATTCTATCAATTCCAATAAAATGCAACGAGATCTAGTATGAGTTGGCGATCAGAACGTATATGGATAGAATTTATAAGAAAGAGGATCTCAAAAGCAATTTCCGCTAGGCCTTTATCTATCCCCTTTTTTTAGGTTCATTAGGGTGTTGGTTGGAACTTCGAGTTATCTTGCTTGGTAGGGATTTGATATCTTGATTTCCATCTCAGCAAAGAATTTCTTTGTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCAAGTCTCTTTAAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACCATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTGGATAGAAAAGAAGGAATAGTGTCTATTTTGGGACAAAATTCTAGAATCTTCCTACAATTCCTTATGAAAGACATTCAGTCCATCAGAATAGAAGTGAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCCTTGACTCGTACCGATCAGAATCTGACCCACCCCACGAGAGAGAAATTCGAAATTGAGAAAAAGGCTCCCGAATTGGCTGGCCTATTTCTTGCGTGTACCAATTGAAGTTTCCTTGAGAAAGTTCAGAATGAATGCTTTCTTAGTTTGTAGCAAGAGGGATAAAACGGAAAAGAAAGAATAGTCTTTTTTATAGACTCTAGTATAACTTAACGGGAATTTCTGAAGAATTCTCATTCATTTGAGCCAAAGCAGACGTATAGGGAACATATGGAAAACTGTCTTTCTTTGTCCGAAATTATGATGCGTATGTAACTCCACAGTAACAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAACTAATGAACAGGGAATGGATTCATAATAGTATCCATATAACTTTACATAGAACTTATGTTTGATATAAATATTAGTAGTGTAGAGAGGTAACGAATGAAGTGAGTTCATTAACAAATCAAAGACGAATGACAAACAAGAAAGCATTCATTCCCCTTCTATATCTTGCATCTATAGTCTTTTTTCCCTCGTGGATCTCTATTTAATAAAAGCCTAGAATCTTGGGTTACTCATTGGTGGAATACTGGTCAATCCGAAATGTTGTAGAATTAGATTAAAGAAAAGATTATTATAACAAAAGTGAGAGAATTAGAGGAACTCTTTCCCTTGGATGAAATGTTAAAGGAATACCGAGAAAGACATCTATCTACAAAAGCTTCGTATCGGAATCTACAAAGAAAGGAAAGGATCCATCCAATTGATCAAGATGCACAATGAATGAGGATCGTATCCATACGATTTTGCACTTCTCGACAAATAGAATCCGTTTCATTATTCTAAGTGGTTATTTTCTATTCTTGGTAATTAAGAACTTGTTATTCTTCACTCTTGGGTTCACGAGTTCCTATATAATTTAAGCGACACAATCAAAGTTTTTTCTATTCTTTTATTAACTGATTTATGTATAGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCCGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGATTGATCATTCAATGAATGACTGCAAGATCGAATCTTTGTTACTTTGTACATAAGTCAAACATTCTAAATTCTACTTATTCCTTATACCCATCCAGAAGGATGCCTCCTATATTCAAGTCAGATTATTATTTCAGTATATAGGGACCTACCTAATTTGATTAATGATTGGACCATGCAAACTAGAAATACCTTTTCTTCGATAAAGGACGAGATTACTCGATCTATTTCCGTATCACTCATGCATGATATATATAATATCTTGGGCACTCGTTTCAAATGCATATCCCATTTTTAGCAGGGTTATGAATGAAAATTCACAAGAAGCAACCAACCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTTCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGTTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCGATCGTATTTCTCCCGAGATTAAAGAAAAGATGGGCAATCCTTTTAGAGCTATCGTCCCACTAAATAAAAGATTCTTGTGATAGGGCCCGTTCCTGGTCAGAAATATAGTGAAATAACCTTTCCTATTCTTTCCCCAGACCTTGCGACTAAGAAATATGTTCACTTCTGAAAATATCCCATATACGGAGGCGGGAACAGTGGAAGGGGTCAGATTTACCCGGGAGTCAGAGTCATAATAATGTTGATAATGCTACACAGGTATAGTAAGAAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCCTACTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTATCTGTTATAA

mRNA sequence

ATGAATCAAAACATTCCTAGTCATAGTGACAATTCTAGTTACAGTACCGTTGATGATTTAGTCGGCCGACATTCGGTCGGATCTGATGACACTTTTTTAATTAGGGATAGTAATAGCAGCAGTCATTCCATTTGGATAGTGAAAGAGAGAGAGACTATGATCGTTACATGGATGATACTATATATATATATAAGTGACAGTTACGTTTATAGTGACATTTGTGGCTCAGGTGCAAATAGTAGTGAAAGTGAGAGTTCCAATATAAGAACTAGCACGGATGGAAGTGATTTAACTAGAATGGAGAGTTCTACGGAAAGTGATACGTCAAGTTCTACGGAAAGTTCTAATGATCTAGATGGAACTCAAACAAGCATTTGTGGGTTCAATGCGCAAATTTGTGTGCTTCTGGAGGAGCACGCATGCAAGAAGGAAGGAAGTGTGAGCTTGATGCAAATGTCAAAAAGATCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGTAGCAATCCTTACATCTCCTACTACTGGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCGCATTTGCGGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCCGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTATAAGAAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCCTACTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTATCTGTTATAA

Coding sequence (CDS)

ATGAATCAAAACATTCCTAGTCATAGTGACAATTCTAGTTACAGTACCGTTGATGATTTAGTCGGCCGACATTCGGTCGGATCTGATGACACTTTTTTAATTAGGGATAGTAATAGCAGCAGTCATTCCATTTGGATAGTGAAAGAGAGAGAGACTATGATCGTTACATGGATGATACTATATATATATATAAGTGACAGTTACGTTTATAGTGACATTTGTGGCTCAGGTGCAAATAGTAGTGAAAGTGAGAGTTCCAATATAAGAACTAGCACGGATGGAAGTGATTTAACTAGAATGGAGAGTTCTACGGAAAGTGATACGTCAAGTTCTACGGAAAGTTCTAATGATCTAGATGGAACTCAAACAAGCATTTGTGGGTTCAATGCGCAAATTTGTGTGCTTCTGGAGGAGCACGCATGCAAGAAGGAAGGAAGTGTGAGCTTGATGCAAATGTCAAAAAGATCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGTAGCAATCCTTACATCTCCTACTACTGGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCGCATTTGCGGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCCGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTATAAGAAAAATAATACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCGAATGAGCGGCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAACGAGTAATCCTACTAATGTGGGAGGATTTGGTCAGGGAGATGCGGAAATAGTCCTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTATCTGTTATAA

Protein sequence

MNQNIPSHSDNSSYSTVDDLVGRHSVGSDDTFLIRDSNSSSHSIWIVKERETMIVTWMILYIYISDSYVYSDICGSGANSSESESSNIRTSTDGSDLTRMESSTESDTSSSTESSNDLDGTQTSICGFNAQICVLLEEHACKKEGSVSLMQMSKRSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYIAFAGIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELLRAGESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFFYLL
Homology
[Close]
BLAST of CmaCh11G012060 vs. Swiss-Prot
Match: CYF_LOBMA (Cytochrome f OS=Lobularia maritima GN=petA PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.1e-31
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIINKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. Swiss-Prot
Match: CYF_LEPVR (Cytochrome f OS=Lepidium virginicum GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.0e-31
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. Swiss-Prot
Match: CYF_BRARR (Cytochrome f OS=Brassica rapa subsp. rapa GN=petA PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.0e-31
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. Swiss-Prot
Match: CYF_NASOF (Cytochrome f OS=Nasturtium officinale GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.0e-31
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. Swiss-Prot
Match: CYF_ARAHI (Cytochrome f OS=Arabis hirsuta GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.0e-31
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TrEMBL
Match: A0A0Y0TZW8_LEPDN (Cytochrome f OS=Lepidium densiflorum GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TrEMBL
Match: D1L8Q1_BRANA (Cytochrome f OS=Brassica napus GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TrEMBL
Match: A0A0P0KCZ1_BRAJU (Cytochrome f OS=Brassica juncea GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TrEMBL
Match: A0A0X9RWW7_9BRAS (Cytochrome f OS=Eutrema botschantzevii GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TrEMBL
Match: A0A125QYB4_EUTHA (Cytochrome f OS=Eutrema halophilum GN=petA PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A)

HSP 1 Score: 132.1 bits (331), Expect = 6.5e-31
Identity = 70/100 (70.00%), Postives = 81/100 (81.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASN R+V+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNGREVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. TAIR10
Match: ATCG00500.1 (ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta)

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-20
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 143 KEGSVSLMQMSK-RSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYIA 202
           +EGS+SLMQM+K  S L DYQS+K+ FY++ILTSPTTGGVTASFG+LGDIIIAEP AYIA
Sbjct: 370 QEGSLSLMQMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGMLGDIIIAEPYAYIA 429

Query: 203 FAG 205
           FAG
Sbjct: 430 FAG 432

[Close]
BLAST of CmaCh11G012060 vs. TAIR10
Match: ATCG00530.1 (ATCG00530.1 CemA-like proton extrusion protein-related)

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 205 IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVIPDT 247
           IGFHSPHGWELMIG +YKDFGF+H +QILSGLVST PVI DT
Sbjct: 162 IGFHSPHGWELMIGYIYKDFGFAHYEQILSGLVSTFPVILDT 203

[Close]
BLAST of CmaCh11G012060 vs. NCBI nr
Match: gi|139390165|ref|YP_001123738.1| (cytochrome f [Lobularia maritima])

HSP 1 Score: 136.3 bits (342), Expect = 9.8e-29
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIINKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. NCBI nr
Match: gi|966202563|ref|YP_009192714.1| (cytochrome f (chloroplast) [Schrenkiella parvula])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. NCBI nr
Match: gi|383930440|ref|YP_005089965.1| (petA gene product (chloroplast) [Brassica napus])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. NCBI nr
Match: gi|575771019|ref|YP_009000345.1| (petA protein (chloroplast) [Arabis alpina])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

[Close]
BLAST of CmaCh11G012060 vs. NCBI nr
Match: gi|674898478|emb|CDY34457.1| (BnaC01g21760D [Brassica napus])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1 

Query: 242 VIPDTANIGSLFKSSISVTCIRKIIRKEKGGYEITIVDASNERQVVDIIPLGLELL-RAG 301
           + PD +   +   ++ +   I KI+RKEKGGYEITIVDASNERQV+DIIP GLELL   G
Sbjct: 194 IYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNERQVIDIIPRGLELLVSEG 253

Query: 302 ESIKINQPLTSNPTNVGGFGQGDAEIVLQDPLRVQGLLFF 341
           ESIK++QPLTSNP NVGGFGQGDAEIVLQDPLRVQGLLFF
Sbjct: 254 ESIKLDQPLTSNP-NVGGFGQGDAEIVLQDPLRVQGLLFF 292

The following BLAST results are available for this feature:
BLAST of CmaCh11G012060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYF_LOBMA6.1e-3172.00Cytochrome f OS=Lobularia maritima GN=petA PE=3 SV=1[more]
CYF_LEPVR8.0e-3172.00Cytochrome f OS=Lepidium virginicum GN=petA PE=3 SV=1[more]
CYF_BRARR8.0e-3172.00Cytochrome f OS=Brassica rapa subsp. rapa GN=petA PE=1 SV=1[more]
CYF_NASOF8.0e-3172.00Cytochrome f OS=Nasturtium officinale GN=petA PE=3 SV=1[more]
CYF_ARAHI8.0e-3172.00Cytochrome f OS=Arabis hirsuta GN=petA PE=3 SV=1[more]
BLAST of CmaCh11G012060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0Y0TZW8_LEPDN8.9e-2972.00Cytochrome f OS=Lepidium densiflorum GN=petA PE=3 SV=1[more]
D1L8Q1_BRANA8.9e-2972.00Cytochrome f OS=Brassica napus GN=petA PE=3 SV=1[more]
A0A0P0KCZ1_BRAJU8.9e-2972.00Cytochrome f OS=Brassica juncea GN=petA PE=3 SV=1[more]
A0A0X9RWW7_9BRAS8.9e-2972.00Cytochrome f OS=Eutrema botschantzevii GN=petA PE=3 SV=1[more]
A0A125QYB4_EUTHA8.9e-2972.00Cytochrome f OS=Eutrema halophilum GN=petA PE=3 SV=1[more]
BLAST of CmaCh11G012060 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00540.16.5e-3170.00ATCG00540.1 photosynthetic electron transfer A[more]
ATCG00500.16.7e-2077.78ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta[more]
ATCG00530.16.5e-1583.33ATCG00530.1 CemA-like proton extrusion protein-related[more]
BLAST of CmaCh11G012060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|139390165|ref|YP_001123738.1|9.8e-2972.00cytochrome f [Lobularia maritima][more]
gi|966202563|ref|YP_009192714.1|1.3e-2872.00cytochrome f (chloroplast) [Schrenkiella parvula][more]
gi|383930440|ref|YP_005089965.1|1.3e-2872.00petA gene product (chloroplast) [Brassica napus][more]
gi|575771019|ref|YP_009000345.1|1.3e-2872.00petA protein (chloroplast) [Arabis alpina][more]
gi|674898478|emb|CDY34457.1|1.3e-2872.00BnaC01g21760D [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002325Cyt_f
IPR004282CemA
IPR011054Rudment_hybrid_motif
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0020037heme binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0031361integral component of thylakoid membrane
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012060.1CmaCh11G012060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002325Cytochrome fPRINTSPR00610CYTOCHROMEFcoord: 286..306
score: 5.7E-14coord: 307..327
score: 5.7E-14coord: 328..343
score: 5.7
IPR002325Cytochrome fPFAMPF01333Apocytochr_F_Ccoord: 253..341
score: 2.2
IPR002325Cytochrome fPROFILEPS51010CYTFcoord: 242..343
score: 19
IPR004282Chloroplast envelope membrane protein, CemAPFAMPF03040CemAcoord: 205..246
score: 1.0
IPR011054Rudiment single hybrid motifunknownSSF51246Rudiment single hybrid motifcoord: 262..312
score: 3.4
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 262..311
score: 3.6
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 262..341
score: 1.6
NoneNo IPR availablePANTHERPTHR33288:SF3APOCYTOCHROME Fcoord: 262..341
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012060Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012060Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012060Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012060Melon (DHL92) v3.5.1cmameB108
CmaCh11G012060Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012060Watermelon (97103) v1cmawmB101
CmaCh11G012060Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012060Bottle gourd (USVL1VR-Ls)cmalsiB142
CmaCh11G012060Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012060Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012060Watermelon (97103) v2cmawmbB117
CmaCh11G012060Wax gourdcmawgoB0171