CmaCh11G012050 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G012050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCytochrome b559 subunit alpha
LocationCma_Chr11 : 7292049 .. 7292605 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAATGATCAGTCAGTTTGCATTGACTTTCACTCATTTGATTCATAGGTTTTGTTATTACACATAATATCTCGAATAAGAAGAAGAAAAGTCTGAGAGGAATGAAATTGAGGAATTTTCTATGGTACATGATTCTACATCGACAACAAGAAAAGAAGAAAGAAATTCTTTAGTGCTGAATTTCGATATTGATTGTTAAATTGCCTTGCTGCGTCAGAAGAAGGATAGCTATACTGATCTCCATTTCAGTTAATTTCTCCATTTACTGATCTCATCCAGAATCGATCCCCTTTTGACTGTAAATATGTGGAGCTCGGCATGTGCTGATATTATCACCAGTATTCGATACTGGGTCTTTCATAGCATTACTATACCTTCTTTCTCTATTGATTGCGGGTTGGTTATTCATTCGTCAGCACGGGTTTAGCTTACGATGTTATTGTAAGCCCTCGTCCAAATGAGTATTTTACCGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCAATGAATTTAGTAGATCTTTTTAG

mRNA sequence

ATGGATTTAATGATCAGTCAGTTTGCATTGACTTTCACTCATTTGATTCATAGCACGGGTTTAGCTTACGATGTTATTGTAAGCCCTCGTCCAAATGAGTATTTTACCGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCAATGAATTTAGTAGATCTTTTTAG

Coding sequence (CDS)

ATGGATTTAATGATCAGTCAGTTTGCATTGACTTTCACTCATTTGATTCATAGCACGGGTTTAGCTTACGATGTTATTGTAAGCCCTCGTCCAAATGAGTATTTTACCGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCAATGAATTTAGTAGATCTTTTTAG

Protein sequence

MDLMISQFALTFTHLIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Homology
[Close]
BLAST of CmaCh11G012050 vs. Swiss-Prot
Match: PSBE_CITSI (Cytochrome b559 subunit alpha OS=Citrus sinensis GN=psbE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.9e-18
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. Swiss-Prot
Match: PSBE_CUSRE (Cytochrome b559 subunit alpha OS=Cuscuta reflexa GN=psbE PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 6.9e-18
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. Swiss-Prot
Match: PSBE_CUCSA (Cytochrome b559 subunit alpha OS=Cucumis sativus GN=psbE PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-17
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQL+EFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. Swiss-Prot
Match: PSBE_OENEH (Cytochrome b559 subunit alpha OS=Oenothera elata subsp. hookeri GN=psbE PE=3 SV=4)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-17
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQL+EFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. Swiss-Prot
Match: PSBE_NYMAL (Cytochrome b559 subunit alpha OS=Nymphaea alba GN=psbE PE=3 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-17
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 18 STGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQL+EFSRSF
Sbjct: 39 STGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. TrEMBL
Match: A0A159BNT0_9ROSI (Photosystem II protein V OS=Citrus platymamma GN=psbE PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-16
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. TrEMBL
Match: A0A0U2GK36_9ROSI (Cytochrome b559 subunit alpha OS=Zanthoxylum piperitum GN=psbE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-16
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. TrEMBL
Match: K4KBZ8_AVECA (Cytochrome b559 subunit alpha (Fragment) OS=Averrhoa carambola GN=psbE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-16
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. TrEMBL
Match: A0A109RTK7_OXADI (Cytochrome b559 subunit alpha OS=Oxalis dillenii GN=psbE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-16
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. TrEMBL
Match: A0A088DB46_CITAU (Cytochrome b559 subunit alpha OS=Citrus aurantiifolia GN=psbE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-16
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. TAIR10
Match: ATCG00580.1 (ATCG00580.1 photosystem II reaction center protein E)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-18
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFD LEQL+EFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. NCBI nr
Match: gi|114329673|ref|YP_740492.1| (photosystem II cytochrome b559 alpha subunit (chloroplast) [Citrus sinensis])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. NCBI nr
Match: gi|160017983|sp|A7M969.2|PSBE_CUSRE (RecName: Full=Cytochrome b559 subunit alpha; AltName: Full=PSII reaction center subunit V)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. NCBI nr
Match: gi|372483908|gb|AEX95596.1| (photosystem II cytochrome b559 alpha subunit (chloroplast) [Haworthia cymbiformis])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQG+PLITGRFDSLEQLNEFSRSF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGVPLITGRFDSLEQLNEFSRSF 83

[Close]
BLAST of CmaCh11G012050 vs. NCBI nr
Match: gi|37721660|gb|AAN32340.1| (cytochrome b-559 alpha subunit, partial (chloroplast) [Palisota bogneri])

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-15
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFS+SF
Sbjct: 28 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSKSF 75

[Close]
BLAST of CmaCh11G012050 vs. NCBI nr
Match: gi|374974813|gb|AFA27498.1| (photosystem II cytochrome b559 alpha subunit, partial (plastid) [Belosynapsis ciliata])

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-15
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 15 LIHSTGLAYDVIVSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSRSF 63
          L  STGLAYDV  SPRPNEYFTESRQGIPLITGRFDSLEQLNEFS+SF
Sbjct: 36 LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLNEFSKSF 83

The following BLAST results are available for this feature:
BLAST of CmaCh11G012050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBE_CITSI6.9e-1891.67Cytochrome b559 subunit alpha OS=Citrus sinensis GN=psbE PE=3 SV=1[more]
PSBE_CUSRE6.9e-1891.67Cytochrome b559 subunit alpha OS=Cuscuta reflexa GN=psbE PE=2 SV=2[more]
PSBE_CUCSA2.6e-1789.58Cytochrome b559 subunit alpha OS=Cucumis sativus GN=psbE PE=3 SV=1[more]
PSBE_OENEH2.6e-1789.58Cytochrome b559 subunit alpha OS=Oenothera elata subsp. hookeri GN=psbE PE=3 SV=... [more]
PSBE_NYMAL2.6e-1793.33Cytochrome b559 subunit alpha OS=Nymphaea alba GN=psbE PE=3 SV=3[more]
BLAST of CmaCh11G012050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A159BNT0_9ROSI7.7e-1691.67Photosystem II protein V OS=Citrus platymamma GN=psbE PE=4 SV=1[more]
A0A0U2GK36_9ROSI7.7e-1691.67Cytochrome b559 subunit alpha OS=Zanthoxylum piperitum GN=psbE PE=3 SV=1[more]
K4KBZ8_AVECA7.7e-1691.67Cytochrome b559 subunit alpha (Fragment) OS=Averrhoa carambola GN=psbE PE=3 SV=1[more]
A0A109RTK7_OXADI7.7e-1691.67Cytochrome b559 subunit alpha OS=Oxalis dillenii GN=psbE PE=3 SV=1[more]
A0A088DB46_CITAU7.7e-1691.67Cytochrome b559 subunit alpha OS=Citrus aurantiifolia GN=psbE PE=3 SV=1[more]
BLAST of CmaCh11G012050 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00580.15.6e-1887.50ATCG00580.1 photosystem II reaction center protein E[more]
BLAST of CmaCh11G012050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|114329673|ref|YP_740492.1|1.1e-1591.67photosystem II cytochrome b559 alpha subunit (chloroplast) [Citrus sinensis][more]
gi|160017983|sp|A7M969.2|PSBE_CUSRE1.1e-1591.67RecName: Full=Cytochrome b559 subunit alpha; AltName: Full=PSII reaction center ... [more]
gi|372483908|gb|AEX95596.1|1.4e-1589.58photosystem II cytochrome b559 alpha subunit (chloroplast) [Haworthia cymbiformi... [more]
gi|37721660|gb|AAN32340.1|2.5e-1589.58cytochrome b-559 alpha subunit, partial (chloroplast) [Palisota bogneri][more]
gi|374974813|gb|AFA27498.1|2.5e-1589.58photosystem II cytochrome b559 alpha subunit, partial (plastid) [Belosynapsis ci... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013082PSII_cytb559_asu_lum
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0042170 plastid membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012050.1CmaCh11G012050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionPFAMPF00284Cytochrom_B559acoord: 21..58
score: 1.4
NoneNo IPR availableGENE3DG3DSA:1.20.5.860coord: 14..62
score: 1.3
NoneNo IPR availablePANTHERPTHR33391FAMILY NOT NAMEDcoord: 15..61
score: 9.3
NoneNo IPR availablePANTHERPTHR33391:SF1CYTOCHROME B559 SUBUNIT ALPHAcoord: 15..61
score: 9.3
NoneNo IPR availableunknownSSF161045Cytochrome b559 subunitscoord: 14..62
score: 3.14

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G012050Melon (DHL92) v3.6.1cmamedB116
CmaCh11G012050Cucumber (Chinese Long) v3cmacucB0120
CmaCh11G012050Watermelon (97103) v2cmawmbB117
CmaCh11G012050Wax gourdcmawgoB0171
CmaCh11G012050Cucumber (Gy14) v1cgycmaB0055
CmaCh11G012050Wild cucumber (PI 183967)cmacpiB105
CmaCh11G012050Cucumber (Chinese Long) v2cmacuB106
CmaCh11G012050Melon (DHL92) v3.5.1cmameB108
CmaCh11G012050Watermelon (Charleston Gray)cmawcgB114
CmaCh11G012050Watermelon (97103) v1cmawmB101
CmaCh11G012050Bottle gourd (USVL1VR-Ls)cmalsiB133
CmaCh11G012050Bottle gourd (USVL1VR-Ls)cmalsiB142