CmaCh11G009830 (gene) Cucurbita maxima (Rimu)

NameCmaCh11G009830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCma_Chr11 : 5230399 .. 5231669 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATCCCAACAAACACAATGTCTTCTCCGTCGATCAGTCAGGTGATTAGTGTTAAGCTTACACAAGAAAATTATCTACTGTGGTCTACCCAAATCCTTCCCTACTTGCGTAGCCAAAACCTTGTTGGTTTTGTGGATGGATCCATGCCTGCACCAAGCCAGACGATCGCCGTTGAACCAAGTGAAGAAACAGGGAATCGCAAAATTATCATCAACCCTGAGTTCACAGTCTGGTACCCCCAGGACCAGCTGGTACTCAGCCTCATCAACTCATCAGTCACTGAGGAGGTTCTCAGCACGATGGTTGGAATCACCACTGCACGAGAAGCCTGGATTACGCTGGAGCGACAATTTGCTTCCACATCTCGAGCAAGAGCAATGCAGATCCGTATGGAACTCTCTACTATCCAGAAAAAGGACATGACAATTGCTGACTACTTTCGTAAAGTAAAACATCTTGGTGATACACTTGCTGCCATTGGCAAGCGAATAGAGGATGAAGAACTCATCGCCTACATGCTGCAAGGACTTGGTCCAGATTATGATCCTCTAGTCACAAGCATTACAACCAGAACAGATGTATACACTGTCAGCGACGTGTATGCTCACATGCTGAGCTATGAGATGCGGCACTTGCGTAAGGGTACATTTGAGCAACTTTCATCTGCTAACAATGTCAATAGGATATCCATTCGTGGAGGTGCCAATGGAGGTCGAGGTAGTCGCGGTCGTAGTCGTCAGTTAAATAGTGGTCATGGACAATCAAGGCGTACTGTGAACAATCCTGGACGTCAACCATCAAAGACACAAAGCAGCTCAGGCATTGTCTGTCAGATTTGTGGTAAGCCCAATCACGATGCTTTGCAATGCTGGCACAGATTTGATCAGGCATATCAAGCCGAAAATAATCTCAAACAAGCAGCTTTGGCAACTAGTGGATACACTAGTGACACAAACTGGTATGTTGACACTGGAGCCACAGATCATATCACCAATGACCTAGAGAGGCTTACCACCAGAGAACGCTACACTGGCACCGACCAAATTCAGGTTGCAAATGGCGCAGGTTTGTCTATCTCTCATATTGGGAATTCATTAATTTCTGGTTCATCTCTTGTTCTGAAACATATCCTATATGCTCCTAAAATCAATAAGCACCTAATTTCAGTACAAAGACTAGCATCTGATAATAATGCTGTTGTAGAATTTCACCCAAACTATTTTTTGGTTAAGAACCGAGTCACGAAGAAACTCCTGCTCCACGGTAG

mRNA sequence

ATGTCAATCCCAACAAACACAATGTCTTCTCCGTCGATCAGTCAGGTGATTAGTGTTAAGCTTACACAAGAAAATTATCTACTGTGGTCTACCCAAATCCTTCCCTACTTGCGTAGCCAAAACCTTGTTGGTTTTGTGGATGGATCCATGCCTGCACCAAGCCAGACGATCGCCGTTGAACCAAGTGAAGAAACAGGGAATCGCAAAATTATCATCAACCCTGAGTTCACAGTCTGGTACCCCCAGGACCAGCTGGTACTCAGCCTCATCAACTCATCAGTCACTGAGGAGGTTCTCAGCACGATGGTTGGAATCACCACTGCACGAGAAGCCTGGATTACGCTGGAGCGACAATTTGCTTCCACATCTCGAGCAAGAGCAATGCAGATCCGTATGGAACTCTCTACTATCCAGAAAAAGGACATGACAATTGCTGACTACTTTCGTAAAGTAAAACATCTTGGTGATACACTTGCTGCCATTGGCAAGCGAATAGAGGATGAAGAACTCATCGCCTACATGCTGCAAGGACTTGGTCCAGATTATGATCCTCTAGTCACAAGCATTACAACCAGAACAGATGTATACACTGTCAGCGACGTGTATGCTCACATGCTGAGCTATGAGATGCGGCACTTGCGTAAGGGTACATTTGAGCAACTTTCATCTGCTAACAATGTCAATAGGATATCCATTCGTGGAGGTGCCAATGGAGGTCGAGGTAGTCGCGGTCGTAGTCGTCAGTTAAATAGTGGTCATGGACAATCAAGGCGTACTGTGAACAATCCTGGACGTCAACCATCAAAGACACAAAGCAGCTCAGGCATTGTCTGTCAGATTTGTGGTAAGCCCAATCACGATGCTTTGCAATGCTGGCACAGATTTGATCAGGCATATCAAGCCGAAAATAATCTCAAACAAGCAGCTTTGGCAACTAGTGGATACACTAGTGACACAAACTGGTATGTTGACACTGGAGCCACAGATCATATCACCAATGACCTAGAGAGGCTTACCACCAGAGAACGCTACACTGGCACCGACCAAATTCAGGTTGCAAATGGCGCAGAACCGAGTCACGAAGAAACTCCTGCTCCACGGTAG

Coding sequence (CDS)

ATGTCAATCCCAACAAACACAATGTCTTCTCCGTCGATCAGTCAGGTGATTAGTGTTAAGCTTACACAAGAAAATTATCTACTGTGGTCTACCCAAATCCTTCCCTACTTGCGTAGCCAAAACCTTGTTGGTTTTGTGGATGGATCCATGCCTGCACCAAGCCAGACGATCGCCGTTGAACCAAGTGAAGAAACAGGGAATCGCAAAATTATCATCAACCCTGAGTTCACAGTCTGGTACCCCCAGGACCAGCTGGTACTCAGCCTCATCAACTCATCAGTCACTGAGGAGGTTCTCAGCACGATGGTTGGAATCACCACTGCACGAGAAGCCTGGATTACGCTGGAGCGACAATTTGCTTCCACATCTCGAGCAAGAGCAATGCAGATCCGTATGGAACTCTCTACTATCCAGAAAAAGGACATGACAATTGCTGACTACTTTCGTAAAGTAAAACATCTTGGTGATACACTTGCTGCCATTGGCAAGCGAATAGAGGATGAAGAACTCATCGCCTACATGCTGCAAGGACTTGGTCCAGATTATGATCCTCTAGTCACAAGCATTACAACCAGAACAGATGTATACACTGTCAGCGACGTGTATGCTCACATGCTGAGCTATGAGATGCGGCACTTGCGTAAGGGTACATTTGAGCAACTTTCATCTGCTAACAATGTCAATAGGATATCCATTCGTGGAGGTGCCAATGGAGGTCGAGGTAGTCGCGGTCGTAGTCGTCAGTTAAATAGTGGTCATGGACAATCAAGGCGTACTGTGAACAATCCTGGACGTCAACCATCAAAGACACAAAGCAGCTCAGGCATTGTCTGTCAGATTTGTGGTAAGCCCAATCACGATGCTTTGCAATGCTGGCACAGATTTGATCAGGCATATCAAGCCGAAAATAATCTCAAACAAGCAGCTTTGGCAACTAGTGGATACACTAGTGACACAAACTGGTATGTTGACACTGGAGCCACAGATCATATCACCAATGACCTAGAGAGGCTTACCACCAGAGAACGCTACACTGGCACCGACCAAATTCAGGTTGCAAATGGCGCAGAACCGAGTCACGAAGAAACTCCTGCTCCACGGTAG

Protein sequence

MSIPTNTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAEPSHEETPAPR
BLAST of CmaCh11G009830 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 7.3e-06
Identity = 77/351 (21.94%), Postives = 138/351 (39.32%), Query Frame = 1

Query: 24  ENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEFTVWYPQD 83
           E Y +W  +I   L  Q+++  VDG MP                     N     W   +
Sbjct: 14  EKYAIWKFRIRALLAEQDVLKVVDGLMP---------------------NEVDDSWKKAE 73

Query: 84  QLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELSTIQ-KKDM 143
           +   S I   +++  L+      TAR+    L+  +   S A  + +R  L +++   +M
Sbjct: 74  RCAKSTIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEM 133

Query: 144 TIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV-YTVSDV 203
           ++  +F     L   L A G +IE+ + I+++L  L   YD ++T+I T ++   T++ V
Sbjct: 134 SLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFV 193

Query: 204 YAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSRQLNSGHGQSRRTVN 263
              +L  E+    K   +   ++  V    +    N  + +  ++R            V 
Sbjct: 194 KNRLLDQEI----KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNR------------VT 253

Query: 264 NPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAEN--NLKQAALATS------ 323
            P ++  K  S   + C  CG+  H    C+H + +    +N  N KQ   ATS      
Sbjct: 254 KP-KKIFKGNSKYKVKCHHCGREGHIKKDCFH-YKRILNNKNKENEKQVQTATSHGIAFM 313

Query: 324 -------GYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAE 358
                      +  + +D+GA+DH+ ND    T         +I VA   E
Sbjct: 314 VKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGE 325

BLAST of CmaCh11G009830 vs. TrEMBL
Match: V7BW74_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G139500g PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 1.1e-128
Identity = 247/317 (77.92%), Postives = 262/317 (82.65%), Query Frame = 1

Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGF+DGSMP P+QTI VE SEE G+
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFMDGSMPPPNQTIVVESSEEIGS 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
           RKII+NPEFTVWYPQDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  RKIIVNPEFTVWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWATLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQI                    +K LGDTLAAIGKR+EDEELIAYMLQGLGPDYDPLVT
Sbjct: 121 MQI--------------------LKRLGDTLAAIGKRVEDEELIAYMLQGLGPDYDPLVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
            ITTR DVYTVSDVYAHMLSYEM HLR GT EQ SSANNVNR+  RGG NG RG  GR R
Sbjct: 181 RITTRIDVYTVSDVYAHMLSYEMHHLRNGTLEQFSSANNVNRMPNRGGINGRRG--GRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  VCQICGKPNH ALQCWHRFDQAYQAE+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDNVCQICGKPNHGALQCWHRFDQAYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYVD 325
           A +ATSGYT D NWY++
Sbjct: 301 AIVATSGYTGDANWYIE 295

BLAST of CmaCh11G009830 vs. TrEMBL
Match: V7B6D9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G110300g PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 8.4e-126
Identity = 247/316 (78.16%), Postives = 259/316 (81.96%), Query Frame = 1

Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSM  P+Q + +        
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMLPPNQRLRLS------- 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
                         QDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  --------------QDQLVLSLINSSVTEEVLSTVVGITTAREAWDTLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQIRMELSTIQKKDMTIADYFRKVK L DTLAAIGKR+EDEELIAYMLQGLGPDYDP VT
Sbjct: 121 MQIRMELSTIQKKDMTIADYFRKVKRLRDTLAAIGKRVEDEELIAYMLQGLGPDYDPFVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
           SITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ SSANNVNR+S RGG NG RG RGR R
Sbjct: 181 SITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFSSANNVNRMSNRGGTNGRRGGRGRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  V QICGKPNHDALQCWH FDQ YQAE+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDKVYQICGKPNHDALQCWHIFDQEYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYV 324
           A +A SGYT D NW+V
Sbjct: 301 AVVAISGYTGDANWFV 295

BLAST of CmaCh11G009830 vs. TrEMBL
Match: C0PCZ1_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.9e-122
Identity = 234/365 (64.11%), Postives = 280/365 (76.71%), Query Frame = 1

Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEET 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E +
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SRA
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRA 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQAE
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAEPSHEE 365
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGA  SHE 
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEA 374

Query: 366 TPAPR 368
           + + R
Sbjct: 375 SSSQR 374

BLAST of CmaCh11G009830 vs. TrEMBL
Match: B8A366_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 5.6e-122
Identity = 233/365 (63.84%), Postives = 279/365 (76.44%), Query Frame = 1

Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEET 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E +
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SR 
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRV 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQAE
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAEPSHEE 365
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGA  SHE 
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEA 374

Query: 366 TPAPR 368
           + + R
Sbjct: 375 SSSQR 374

BLAST of CmaCh11G009830 vs. TrEMBL
Match: V7CSV3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G323600g PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 6.2e-121
Identity = 238/298 (79.87%), Postives = 248/298 (83.22%), Query Frame = 1

Query: 2   SIPTNTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEP 61
           S+  NTMSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSMP P+QTI VE 
Sbjct: 4   SLQINTMSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMPPPNQTITVE- 63

Query: 62  SEETGNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFAS 121
                          ++WYPQDQLVLSLINSSVTEEVLST+VGITTAREAW  LERQFAS
Sbjct: 64  ---------------SIWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWDMLERQFAS 123

Query: 122 TSRARAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPD 181
           TSRARAMQ  MELSTIQKKDMTIADYFRKVK LGDTLAAIGKR+EDEELIAYMLQGLG D
Sbjct: 124 TSRARAMQNHMELSTIQKKDMTIADYFRKVKRLGDTLAAIGKRVEDEELIAYMLQGLGLD 183

Query: 182 YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRG 241
           YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ   ANNVN +S RGG NG RG
Sbjct: 184 YDPLVTSITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFPFANNVNSMSNRGGTNGRRG 243

Query: 242 SRGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAY 300
             GR RQ N G GQ+  T NN GRQPSK QS+S  VCQICGKPNHDALQCWHRFDQAY
Sbjct: 244 --GRGRQSNGGRGQTWHTRNNSGRQPSKAQSNSDKVCQICGKPNHDALQCWHRFDQAY 283

BLAST of CmaCh11G009830 vs. TAIR10
Match: AT1G34070.1 (AT1G34070.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-15
Identity = 66/261 (25.29%), Postives = 108/261 (41.38%), Query Frame = 1

Query: 17  ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
           + + + + NY  W    L +  S +++G +DG++                   +  N   
Sbjct: 22  VMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-------------------LPTNAND 81

Query: 77  TVWYPQDQLV-LSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARAMQIRMELS 136
             W  +D +V LSL  +   ++   + V  +T+R+ W+ ++ QF +   ARA+++  EL 
Sbjct: 82  VNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 141

Query: 137 TIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV 196
           T    DM +ADY+RK+K L D+L  +   + D  L+ Y+L GL P +D ++  I  R   
Sbjct: 142 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPF 201

Query: 197 YTVSDVYAHMLSYEMR-------------HLRKGTFEQLSSANNVNRISIRGGANGGRGS 256
            +  D    +   E R             H    T    S A  V      GG   G   
Sbjct: 202 PSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRG 261

Query: 257 RGRSRQLNSGHGQSRRTVNNP 264
           RGR   +  G G      N P
Sbjct: 262 RGRGNNIFRGRGGRFSYYNMP 263

BLAST of CmaCh11G009830 vs. TAIR10
Match: AT5G48050.1 (AT5G48050.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-14
Identity = 69/263 (26.24%), Postives = 114/263 (43.35%), Query Frame = 1

Query: 17  ISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGNRKIIINPEF 76
           +++ L + NY +W         S  ++G +DGS           P+  T  R        
Sbjct: 24  VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSST---------PTPMTEKR-------- 83

Query: 77  TVWYPQDQLVLSLINSSVTEEVLSTMVGI-TTAREAWITLERQFASTSRARAMQIRMELS 136
             W  +D LV   I  ++T+ +L T++ +  TAR+ W++LE  F     ARA+Q   EL 
Sbjct: 84  --WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELR 143

Query: 137 TIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVTSITTRTDV 196
           T    D+++ +Y +K+K L D L  +   I D  L+ ++L GL   YD ++  I  ++  
Sbjct: 144 TTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPF 203

Query: 197 YTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRG----------------GANGG 256
            + ++  + +L  E R   K      SS ++ N  S+                    N  
Sbjct: 204 PSFTEARSMLLMEESRLSNKSK----SSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNS 263

Query: 257 RGSRGRSRQLNSGHGQSRRTVNN 263
              RGRS++ N G G S    NN
Sbjct: 264 NMGRGRSKKKNRGGGSSDGRYNN 263

BLAST of CmaCh11G009830 vs. NCBI nr
Match: gi|593699628|ref|XP_007150263.1| (hypothetical protein PHAVU_005G139500g [Phaseolus vulgaris])

HSP 1 Score: 468.0 bits (1203), Expect = 1.5e-128
Identity = 247/317 (77.92%), Postives = 262/317 (82.65%), Query Frame = 1

Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGF+DGSMP P+QTI VE SEE G+
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFMDGSMPPPNQTIVVESSEEIGS 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
           RKII+NPEFTVWYPQDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  RKIIVNPEFTVWYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWATLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQI                    +K LGDTLAAIGKR+EDEELIAYMLQGLGPDYDPLVT
Sbjct: 121 MQI--------------------LKRLGDTLAAIGKRVEDEELIAYMLQGLGPDYDPLVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
            ITTR DVYTVSDVYAHMLSYEM HLR GT EQ SSANNVNR+  RGG NG RG  GR R
Sbjct: 181 RITTRIDVYTVSDVYAHMLSYEMHHLRNGTLEQFSSANNVNRMPNRGGINGRRG--GRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  VCQICGKPNH ALQCWHRFDQAYQAE+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDNVCQICGKPNHGALQCWHRFDQAYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYVD 325
           A +ATSGYT D NWY++
Sbjct: 301 AIVATSGYTGDANWYIE 295

BLAST of CmaCh11G009830 vs. NCBI nr
Match: gi|593408126|ref|XP_007140419.1| (hypothetical protein PHAVU_008G110300g [Phaseolus vulgaris])

HSP 1 Score: 458.4 bits (1178), Expect = 1.2e-125
Identity = 247/316 (78.16%), Postives = 259/316 (81.96%), Query Frame = 1

Query: 8   MSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEETGN 67
           MSSPSISQVI+VKLTQENYLLWS QILPYLRSQ LVGFVDGSM  P+Q + +        
Sbjct: 1   MSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMLPPNQRLRLS------- 60

Query: 68  RKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRARA 127
                         QDQLVLSLINSSVTEEVLST+VGITTAREAW TLERQFASTSRARA
Sbjct: 61  --------------QDQLVLSLINSSVTEEVLSTVVGITTAREAWDTLERQFASTSRARA 120

Query: 128 MQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPLVT 187
           MQIRMELSTIQKKDMTIADYFRKVK L DTLAAIGKR+EDEELIAYMLQGLGPDYDP VT
Sbjct: 121 MQIRMELSTIQKKDMTIADYFRKVKRLRDTLAAIGKRVEDEELIAYMLQGLGPDYDPFVT 180

Query: 188 SITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGGANGGRGSRGRSR 247
           SITTRTDVYTVSDVYAHMLSYEMRHLR GT EQ SSANNVNR+S RGG NG RG RGR R
Sbjct: 181 SITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFSSANNVNRMSNRGGTNGRRGGRGRGR 240

Query: 248 QLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAENNLKQ 307
           Q N G GQ+  T NN GRQPSK QS+S  V QICGKPNHDALQCWH FDQ YQAE+NLKQ
Sbjct: 241 QSNGGRGQTWHTRNNFGRQPSKAQSNSDKVYQICGKPNHDALQCWHIFDQEYQAEDNLKQ 295

Query: 308 AALATSGYTSDTNWYV 324
           A +A SGYT D NW+V
Sbjct: 301 AVVAISGYTGDANWFV 295

BLAST of CmaCh11G009830 vs. NCBI nr
Match: gi|670425354|ref|XP_008653324.1| (PREDICTED: uncharacterized protein LOC103633398 [Zea mays])

HSP 1 Score: 447.2 bits (1149), Expect = 2.8e-122
Identity = 234/365 (64.11%), Postives = 280/365 (76.71%), Query Frame = 1

Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEET 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E +
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SRA
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRA 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQAE
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAEPSHEE 365
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGA  SHE 
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEA 374

Query: 366 TPAPR 368
           + + R
Sbjct: 375 SSSQR 374

BLAST of CmaCh11G009830 vs. NCBI nr
Match: gi|219888481|gb|ACL54615.1| (unknown [Zea mays])

HSP 1 Score: 445.7 bits (1145), Expect = 8.0e-122
Identity = 233/365 (63.84%), Postives = 279/365 (76.44%), Query Frame = 1

Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEET 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E +
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SR 
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRV 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAE 305
           RGR  +   G G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQAE
Sbjct: 255 RGRGGRSQPGRGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAEPSHEE 365
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGA  SHE 
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEA 374

Query: 366 TPAPR 368
           + + R
Sbjct: 375 SSSQR 374

BLAST of CmaCh11G009830 vs. NCBI nr
Match: gi|670365968|ref|XP_008664352.1| (PREDICTED: uncharacterized protein LOC103642979 [Zea mays])

HSP 1 Score: 444.1 bits (1141), Expect = 2.3e-121
Identity = 233/365 (63.84%), Postives = 279/365 (76.44%), Query Frame = 1

Query: 6   NTMSSPSISQVISVKLTQENYLLWSTQILPYLRSQNLVGFVDGSMPAPSQTIAVEPSEET 65
           ++M +P+ SQ++S+KL  ENYLLW  Q+LPYLRSQ L G +DGS+PAP QT+AV+P+E +
Sbjct: 15  SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 66  GNRKIIINPEFTVWYPQDQLVLSLINSSVTEEVLSTMVGITTAREAWITLERQFASTSRA 125
           G R I INPEFT WY QDQLVLS+INSS++EEVL+T+V  TTAR AW TLER +AS+SRA
Sbjct: 75  GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRA 134

Query: 126 RAMQIRMELSTIQKKDMTIADYFRKVKHLGDTLAAIGKRIEDEELIAYMLQGLGPDYDPL 185
           R MQIRM+L+TIQK D+T A+YFRKVK L DTLAA+GKR+EDEE I+Y+L+GL  DYD L
Sbjct: 135 RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 186 VTSITTRTDVYTVSDVYAHMLSYEMRHLRKGTFEQLSSANNVNRISIRGG---ANGGRGS 245
           VTSITTR D YT+SDVYAH+LS+E R        Q+SS NN NR+  RGG      GRG 
Sbjct: 195 VTSITTRPDTYTISDVYAHLLSFETRQEYHTVVGQISSVNNANRVPSRGGGAFGRNGRGG 254

Query: 246 RGRSRQLNSGHGQSRRTVNNPGRQPSKTQSSSGIVCQICGKPNHDALQCWHRFDQAYQAE 305
           RGR  +     G +R     P R PS   SSSG  CQICGK NH+ALQCWHRFDQAYQAE
Sbjct: 255 RGRVGRSQPARGNNR----PPARPPSNNSSSSG-TCQICGKGNHNALQCWHRFDQAYQAE 314

Query: 306 NNLKQAALATSGYTSDTNWYVDTGATDHITNDLERLTTRERYTGTDQIQVANGAEPSHEE 365
           + +KQAA AT  Y  D NWY+D+GATDHIT+DLERLTTRERYTG D+IQVANGA  SHE 
Sbjct: 315 STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEA 374

Query: 366 TPAPR 368
           + + R
Sbjct: 375 SSSQR 374

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
COPIA_DROME7.3e-0621.94Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
V7BW74_PHAVU1.1e-12877.92Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G139500g PE=4 SV=1[more]
V7B6D9_PHAVU8.4e-12678.16Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G110300g PE=4 SV=1[more]
C0PCZ1_MAIZE1.9e-12264.11Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
B8A366_MAIZE5.6e-12263.84Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
V7CSV3_PHAVU6.2e-12179.87Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G323600g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G34070.14.1e-1525.29 Retrotransposon gag protein (InterPro:IPR005162)[more]
AT5G48050.17.7e-1426.24 Retrotransposon gag protein (InterPro:IPR005162)[more]
Match NameE-valueIdentityDescription
gi|593699628|ref|XP_007150263.1|1.5e-12877.92hypothetical protein PHAVU_005G139500g [Phaseolus vulgaris][more]
gi|593408126|ref|XP_007140419.1|1.2e-12578.16hypothetical protein PHAVU_008G110300g [Phaseolus vulgaris][more]
gi|670425354|ref|XP_008653324.1|2.8e-12264.11PREDICTED: uncharacterized protein LOC103633398 [Zea mays][more]
gi|219888481|gb|ACL54615.1|8.0e-12263.84unknown [Zea mays][more]
gi|670365968|ref|XP_008664352.1|2.3e-12163.84PREDICTED: uncharacterized protein LOC103642979 [Zea mays][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G009830.1CmaCh11G009830.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..261
score: 9.7E-79coord: 278..357
score: 9.7
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 1..261
score: 9.7E-79coord: 278..357
score: 9.7
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 79..212
score: 8.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None