CmaCh11G009640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G009640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ralf-like 25
Location	Cma_Chr11 : 5098502 .. 5098711 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCTTCCTAATATGTTTAGCTTTAATTAGCATGGTGGTGACGAGCCCGGAAGTATCAGCCGAAAAGAAATTTCTTAAATTTTCAGAATGTCATCACCCTAACCCACCTCCACATTGTTCTTTTGGAAATAGGGGCTCTATACCTGTTCCCGCTAATCCCTATAATCGAGGATGCTCTGCTATCAATCGTTGTCGAGAAGGATGA

mRNA sequence

ATGAAGTCCTTCCTAATATGTTTAGCTTTAATTAGCATGGTGGTGACGAGCCCGGAAGTATCAGCCGAAAAGAAATTTCTTAAATTTTCAGAATGTCATCACCCTAACCCACCTCCACATTGTTCTTTTGGAAATAGGGGCTCTATACCTGTTCCCGCTAATCCCTATAATCGAGGATGCTCTGCTATCAATCGTTGTCGAGAAGGATGA

Coding sequence (CDS)

ATGAAGTCCTTCCTAATATGTTTAGCTTTAATTAGCATGGTGGTGACGAGCCCGGAAGTATCAGCCGAAAAGAAATTTCTTAAATTTTCAGAATGTCATCACCCTAACCCACCTCCACATTGTTCTTTTGGAAATAGGGGCTCTATACCTGTTCCCGCTAATCCCTATAATCGAGGATGCTCTGCTATCAATCGTTGTCGAGAAGGATGA

Protein sequence

MKSFLICLALISMVVTSPEVSAEKKFLKFSECHHPNPPPHCSFGNRGSIPVPANPYNRGCSAINRCREG

Homology

[Close]

BLAST of CmaCh11G009640 vs. Swiss-Prot
Match: RLF10_ARATH (Protein RALF-like 10 OS=Arabidopsis thaliana GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-07
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSAEKKFLKF---SECHHPNPPPHC-SFGNRGSIPVPANPY 60
          MK+ +ICL +I   V +  V + +K L +   ++C  PNPPP C   G +   P PAN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 NRGCSAINRCR 68
           RGCS I RC+
Sbjct: 61 RRGCSKITRCK 71

[Close]

BLAST of CmaCh11G009640 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.8e-12
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSAEKKFLKFSE-CHHPNPPPHCSFGNRGSIPVPANPYNRG 60
          MKS+LICLALI M+V   EV+AE K LKF + C+ P+PPP C   NR  +   ANPYNR 
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCP--NRDKVE-EANPYNRD 60

Query: 61 CSAINRCREG 70
          CSAINRCR G
Sbjct: 61 CSAINRCRGG 67

[Close]

BLAST of CmaCh11G009640 vs. TrEMBL
Match: A0A0A0LZK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G610770 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-10
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   MKSFLICLALISMVVTSPEVSAEKKFLKFSE-CHHPNPPPHCSFGNRGSIPVPANPYNRG 60
           MKS+LIC AL+SM+V S EV+AE KFL FS+ C  P+PP  C    R   P+   PY+RG
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPI---PYDRG 93

Query: 61  CSAINRCREG 70
           CS I RCR G
Sbjct: 94  CSPILRCRGG 100

[Close]

BLAST of CmaCh11G009640 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSAEKKFLKF-SECHHPNPPPHCSFGNRGSIPVPANPYNRG 60
          MKS+LIC+  ISM+V S EV A+   LKF + C  P+PPP CS  ++     P NPY+RG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCS--SKVKDHAPTNPYDRG 60

Query: 61 CSAINRCR 68
          CSAI+RCR
Sbjct: 61 CSAIHRCR 66

[Close]

BLAST of CmaCh11G009640 vs. TAIR10
Match: AT2G19020.1 (AT2G19020.1 ralf-like 10)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSAEKKFLKF---SECHHPNPPPHC-SFGNRGSIPVPANPY 60
          MK+ +ICL +I   V +  V + +K L +   ++C  PNPPP C   G +   P PAN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 NRGCSAINRCR 68
           RGCS I RC+
Sbjct: 61 RRGCSKITRCK 71

[Close]

BLAST of CmaCh11G009640 vs. TAIR10
Match: AT3G25165.1 (AT3G25165.1 ralf-like 25)

HSP 1 Score: 46.2 bits (108), Expect = 9.4e-06
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSA---EKKFLKFSECHHPNPPPHCSFGNRGSIPVPANPYN 60
          MK+F+I L +I  ++    V A   ++K+L    C  PN PP C          P N Y+
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCH-RQPYKPRTPVNVYS 60

Query: 61 RGCSAINRCR 68
          RGC+ INRCR
Sbjct: 61 RGCTTINRCR 69

[Close]

BLAST of CmaCh11G009640 vs. NCBI nr
Match: gi|700206506|gb|KGN61625.1| (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSAEKKFLKFSE-CHHPNPPPHCSFGNRGSIPVPANPYNRG 60
          MKS+LICLALI M+V   EV+AE K LKF + C+ P+PPP C   NR  +   ANPYNR 
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCP--NRDKVE-EANPYNRD 60

Query: 61 CSAINRCREG 70
          CSAINRCR G
Sbjct: 61 CSAINRCRGG 67

[Close]

BLAST of CmaCh11G009640 vs. NCBI nr
Match: gi|700211353|gb|KGN66449.1| (hypothetical protein Csa_1G610770 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 7.7e-10
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   MKSFLICLALISMVVTSPEVSAEKKFLKFSE-CHHPNPPPHCSFGNRGSIPVPANPYNRG 60
           MKS+LIC AL+SM+V S EV+AE KFL FS+ C  P+PP  C    R   P+   PY+RG
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPI---PYDRG 93

Query: 61  CSAINRCREG 70
           CS I RCR G
Sbjct: 94  CSPILRCRGG 100

[Close]

BLAST of CmaCh11G009640 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 1  MKSFLICLALISMVVTSPEVSAEKKFLKF-SECHHPNPPPHCSFGNRGSIPVPANPYNRG 60
          MKS+LIC+  ISM+V S EV A+   LKF + C  P+PPP CS  ++     P NPY+RG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCS--SKVKDHAPTNPYDRG 60

Query: 61 CSAINRCR 68
          CSAI+RCR
Sbjct: 61 CSAIHRCR 66

The following BLAST results are available for this feature:

BLAST of CmaCh11G009640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF10_ARATH	4.7e-07	42.25	Protein RALF-like 10 OS=Arabidopsis thaliana GN=RALFL10 PE=2 SV=1	[more]

BLAST of CmaCh11G009640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI94_CUCSA	9.8e-12	61.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1	[more]
A0A0A0LZK3_CUCSA	5.4e-10	55.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G610770 PE=4 SV=1	[more]
A0A0A0M0X3_CUCSA	1.6e-09	54.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1	[more]

BLAST of CmaCh11G009640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19020.1	2.6e-08	42.25	ralf-like 10	[more]
AT3G25165.1	9.4e-06	38.57	ralf-like 25	[more]

BLAST of CmaCh11G009640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206506\|gb\|KGN61625.1\|	1.4e-11	61.43	hypothetical protein Csa_2G191310 [Cucumis sativus]	[more]
gi\|700211353\|gb\|KGN66449.1\|	7.7e-10	55.71	hypothetical protein Csa_1G610770 [Cucumis sativus]	[more]
gi\|700211681\|gb\|KGN66777.1\|	2.3e-09	54.41	hypothetical protein Csa_1G690160 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009640.1	CmaCh11G009640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 36..67 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G009640	Silver-seed gourd	carcmaB1252
CmaCh11G009640	Cucumber (Chinese Long) v3	cmacucB0099
CmaCh11G009640	Wax gourd	cmawgoB0169
CmaCh11G009640	Cucurbita maxima (Rimu)	cmacmaB082
CmaCh11G009640	Cucumber (Gy14) v1	cgycmaB1100
CmaCh11G009640	Cucurbita moschata (Rifu)	cmacmoB109
CmaCh11G009640	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G009640	Wild cucumber (PI 183967)	cmacpiB084
CmaCh11G009640	Cucumber (Chinese Long) v2	cmacuB085
CmaCh11G009640	Melon (DHL92) v3.5.1	cmameB109
CmaCh11G009640	Melon (DHL92) v3.5.1	cmameB107
CmaCh11G009640	Cucurbita pepo (Zucchini)	cmacpeB147
CmaCh11G009640	Bottle gourd (USVL1VR-Ls)	cmalsiB128
CmaCh11G009640	Cucumber (Gy14) v2	cgybcmaB027
CmaCh11G009640	Melon (DHL92) v3.6.1	cmamedB114