CmaCh11G004190 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G004190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr11 : 2060520 .. 2063089 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCGCGCCAGATGATCATAGATTTTTAACTGGGTCAGTTCTAATGCTTTGATCTTCCCAATTAAAGTAATCAATCTAAGTTTTACTTTCAAGAACAAAATCCCCCCATGGAAGAAAAAAAAAATTATGATTCAGTTCATCTAGTCGATTCCAGCAACTTGTTGATCTCAATCTGATAGGGTCAACAGACGATTTCTGATATTTCTTCCGTTCCCACATTGATTGAGATTGTTTCGAGAAACAAAAAGAACTAGATGATTAGGTCCAGGTCATAAATTCTAGCGGCTGGTTGGATAGGAATTGAACTGAAGATGATACAGTTAGACATGTTTCTCCTGAAATAATTTTAAATACAGATCAAGTTTAGTCCTATCTGCAAAAATTATGTACATCTGAAATCCAAATATTAGAATCTCTGTCTATAGATTGAGTGTATTGCTTGTTATATCGTATCATCATACAATCAAATACGCAACTACGTTTATACATGCCGTGATATGTGATATTTGCCTATAAACATGTAGTGCAAAATTTCCAGCAAAATTCGGAAAAACCTTTATGTTGTAATGTCCAGCGCGCAGGTACGTCCGTTTAGTCATCGTTATAATAAAGTAATGTGTCCGTGAAAGGTATGATTTCAGTCTTAACCATCAATATTTCTCAGGCTGCGCTGGCTTCCTTCTGCAAGCTGCGTTATTGCTTGCTCACAAACTGGGTTAAGAAAATCAATTCTTCATGACCTCCCTGAACGGCAAGGCCAAAGCCATTATTATGACAAGATTTGCCGCCCGATCATGCTTGTCCAAAGTATGTTTTCCATCGTTAATCTCTCTACTCCATAGACATTACATCTCTTATTGCATGCCCATTTACCATCTTTGATCATGAATTGTCATCAAAGTTCTGGAAGAAAATTCTGATTTATGGCGAATCATTGTACATATGGGTAAATATAGTTGCTTTCTATGGTGTCTTCATATAAGACGCGTTTGAATCAAAGAATAGAATTTGCATCTGATATGTCCATAATCACATATAATGAGGTACATTATTAGTTGAAGTGCATTATTCTTAAGTAATCTGTAAAATATTCGTCATTCCCAAATTTCATTGCGAATGTTCAAGATGGTTAGATGATAATAACCATGACAGTCGATCGACTTGTTAAGTCCAAGTTGGTCGGCCCAGAACTCAGACTCCAAAGGAATTTGATAGTAACTGAAGTAGTTCGGGGTGCAGTAGGAGAAGACAGAATGAGTGAAAATTATGAGGCCCTTCTAGAGATTTCTATCGTGTTTTAATATTCGGAGTATTTAGGTTGTTGTAGGCATAGGCAATAAAGTGAAAAGGAAAGGGATCCTGAAGACTCTGTGGAGATGAAAATGAAGAGAGGTACTGAAAAGAGAAAAGTTTGACTTGTAGATGTTTTGGGGAAGGCAGCTTTATGGGCGGCTGTTGCTCAGACGCATGTTTCCGTTTCAGCTTTCCTTGTTTTCCTTCTCTTACCCTCTTGGTTTGCTTCGATTTAGCTTTCCCATTGGCAGCTTTTGTTGCCTTTTTTAAGGGTCGTGCTCTGCCTTTTTCAACTTTAGTTTCCTCTGCCTTTACACCCCCTGAGAATCAGAATCTCTTACATAAGAACAGAAAGCGCACCCACAGTCACTTTTAATTCCACCCCTTCCACACAAACTTCACCACTAATAAATGTGTGTTGGTATTGATTATGCCGACAAGGGGTTGGTTGTTATTGATTGTTGAGGACGAGGAAGGAAGTTCCACAGCCCCACACAGACTTCACCACTAGATAAAGCATGTCTGTCTCTTTTGCAAATGTATCTAAAAGTGTATACCATTGATGACCTTTTTGAAGCTTGTATTAGAAGTATAATAGATTATTGTTGATTAATGTTTAGAAGAAAAGTTGAATCATTTAGTCATTTTGAGTATTAACAATGTCATCATCAACTCAAGGAGGGAAGTTGGATTGTAAAGGAAGGCCTTTTTGGTGGCTTTTTGTATTTGGTCATCTCAAAAGCAACACAACTTCGCTTTATTCTAAAACTATAGAAAGGTAGTGGTGGGGATTGGATTGGATTGGATTGGAGAGAAAGTCCACATGCTTTGGATGCAAGAAGCTACCTAAACTTTTTAAAGGCGATGCTTCTCAAATTTCCCTCAAACTTTGCAAAAAGTACTTTTATTCCCTTCCCTATCTTGAAGTTTGACCTTCATCCAACAAAAATTACCATATTGCCCATCCATATTGCTAATTCTTTGCCAGAAATCAAGTGGGGTTAAGCTTTTTTGTGGCGTAGAAGAGTTTAGGTCTGATTGTTGGGTCCCGATCATAAATCTTGGAGGTCAATCTTTTTGCTATCAGCTATCACCTTTGGAAAGCCCTGAATCATAAATTTGAAGAGTTAGCTGTGTCTTTCGGTTCCTGTTTATAAAAAAGAAGAAAAACATGAAGTTAATATTTATTATGTATTTCTATTGATTGTTTTTTTTTTTTTTTATATGAGGTTTTTGTTATTTTGTTGCGTGCAGATAGACTCTTCTTTCTAA

mRNA sequence

ATGGAAATCGCGCCAGATGATCATAGATTTTTAACTGGGCTGCGCTGGCTTCCTTCTGCAAGCTGCGTTATTGCTTGCTCACAAACTGGGTTAAGAAAATCAATTCTTCATGACCTCCCTGAACGGCAAGGCCAAAGCCATTATTATGACAAGATTTGCCGCCCGATCATGCTTGTCCAAAATGTTTTGGGGAAGGCAGCTTTATGGGCGGCTGTTGCTCAGACGCATATAGACTCTTCTTTCTAA

Coding sequence (CDS)

ATGGAAATCGCGCCAGATGATCATAGATTTTTAACTGGGCTGCGCTGGCTTCCTTCTGCAAGCTGCGTTATTGCTTGCTCACAAACTGGGTTAAGAAAATCAATTCTTCATGACCTCCCTGAACGGCAAGGCCAAAGCCATTATTATGACAAGATTTGCCGCCCGATCATGCTTGTCCAAAATGTTTTGGGGAAGGCAGCTTTATGGGCGGCTGTTGCTCAGACGCATATAGACTCTTCTTTCTAA

Protein sequence

MEIAPDDHRFLTGLRWLPSASCVIACSQTGLRKSILHDLPERQGQSHYYDKICRPIMLVQNVLGKAALWAAVAQTHIDSSF
Homology
[Close]
BLAST of CmaCh11G004190 vs. NCBI nr
Match: gi|659107396|ref|XP_008453653.1| (PREDICTED: uncharacterized protein LOC103494305 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-09
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 

Query: 17 LPSASCVIACSQTGLRKSILHDLPERQGQSHYYDKICRP 56
          L + SC +ACS+ GLRKSILHDL ERQGQS YYDKICRP
Sbjct: 23 LMNQSCFVACSKNGLRKSILHDLHERQGQSPYYDKICRP 61

The following BLAST results are available for this feature:
BLAST of CmaCh11G004190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh11G004190 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh11G004190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh11G004190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107396|ref|XP_008453653.1|5.9e-0976.92PREDICTED: uncharacterized protein LOC103494305 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G004190.1CmaCh11G004190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G004190MELO3C017506Melon (DHL92) v3.5.1cmameB120
CmaCh11G004190ClCG06G013000Watermelon (Charleston Gray)cmawcgB135
CmaCh11G004190Lsi06G011050Bottle gourd (USVL1VR-Ls)cmalsiB148
CmaCh11G004190MELO3C017506.2Melon (DHL92) v3.6.1cmamedB128
CmaCh11G004190Cla97C06G122310Watermelon (97103) v2cmawmbB139
CmaCh11G004190Bhi02G000620Wax gourdcmawgoB0150
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G004190Cucurbita pepo (Zucchini)cmacpeB110
CmaCh11G004190Cucurbita pepo (Zucchini)cmacpeB132
CmaCh11G004190Cucurbita pepo (Zucchini)cmacpeB153
CmaCh11G004190Cucurbita pepo (Zucchini)cmacpeB163
CmaCh11G004190Bottle gourd (USVL1VR-Ls)cmalsiB104
CmaCh11G004190Cucumber (Gy14) v2cgybcmaB164
CmaCh11G004190Melon (DHL92) v3.6.1cmamedB142
CmaCh11G004190Silver-seed gourdcarcmaB0073
CmaCh11G004190Silver-seed gourdcarcmaB0710
CmaCh11G004190Cucumber (Chinese Long) v3cmacucB0136
CmaCh11G004190Watermelon (97103) v2cmawmbB097
CmaCh11G004190Wax gourdcmawgoB0098
CmaCh11G004190Cucurbita maxima (Rimu)cmacmaB072
CmaCh11G004190Cucurbita maxima (Rimu)cmacmaB168
CmaCh11G004190Cucumber (Gy14) v1cgycmaB0099
CmaCh11G004190Cucumber (Gy14) v1cgycmaB0177
CmaCh11G004190Cucurbita moschata (Rifu)cmacmoB099
CmaCh11G004190Cucurbita moschata (Rifu)cmacmoB112
CmaCh11G004190Cucurbita moschata (Rifu)cmacmoB160
CmaCh11G004190Wild cucumber (PI 183967)cmacpiB097
CmaCh11G004190Wild cucumber (PI 183967)cmacpiB117
CmaCh11G004190Cucumber (Chinese Long) v2cmacuB104
CmaCh11G004190Cucumber (Chinese Long) v2cmacuB120
CmaCh11G004190Melon (DHL92) v3.5.1cmameB130
CmaCh11G004190Watermelon (Charleston Gray)cmawcgB091
CmaCh11G004190Watermelon (97103) v1cmawmB133
CmaCh11G004190Watermelon (97103) v1cmawmB143