CmaCh11G001400 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G001400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Endonuclease/ nucleic acid binding protein
Location	Cma_Chr11 : 752212 .. 756501 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTTCCCATTATTACCGCTCAAATTATCCGCCAACGACCGAATGATGAGATGAGGTCGAGCAAAGAATCGAAGAAGAAAACTCGCCCCTCATCACCTCTCAGGGACCGAACCAGTCCTTCAACGAGGTTCGAATCGAGACGTCATGGGTCTAACTCATCGAGGCTCAGCCCCTCTACTTCCCTTCTGGACCGTGACCTTGTCACCAGCGAAGCCAATCTCCTCGGAGACCTAAAACTCTCTCCCGACGACTCAGTTTCAGACTACAATCCCCGGAGCTTTCCTTACAGTGTGAAGCAGCAATGTTGGGATAAGGCCGAGAAGATTAAAGGAAGGGACCCAGATCGGTGGCGCCGAGATGCTCTTGGTAACACTGTTTTCCGAAAGCTTGTTGGCTGCCCCGGTTGTCTTTGTCATGACTATGATCATATTTTGCCTTACTCTAAGGTACTTCCCCTTATCGATTCTACTCTTTGCTCCAGATGTTTCGTTGGTATTCCTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCGTTTCTTGTATTTTGTTGAGTATGGGACTGGGTTGTTGTGAAGTGCTTTGTGTTTGCTATCATAATGTAGGCTGTCTGATGGTCATTGTTGGGAGGGAGTCCCACATGGGTCATCAGGGATGATCGTGGGTCTATAGATAAGAAATACATCTATATTGGTATGAGGCCTTTTGGGAAGTCTAAAACAAAGCTACGAGAGCTGATCCTCAAAGTGGACAATATAATATTATTGTGAATATATGTGATTCCTAACCTGGTATTAGAATCACGCCCTTAACTTAGCAATGTCAATAGAATCCTCAAATGTCGAATAAAGAAATGAGCCTTGAAGGTATAGTCAAATGTGACTCAAGTGTCGAACAAAGGGTGTACTTTATTCGAGAGCTCCAGAAAAAGGAGTCGAGCCTCGTTTAAGTGGAGATTGTTCGAGGGCTACATAGGCCTCAATGGAGGCTCTATGGTGTACTTTTTCCGTGTTGAGGATTGCTGGGTGAGAGTCCCACATGGGCTAATTAAGGGGATGATCATGGGTTATAAATAAGGAATACATCTCCATTGGTATGAGGCTTTTTGGGAAGACCAAAAGTAAAGCCATGAGAGCTAATGCTTAAAGTGGACAATATCATTATGGAGGTTCGTGATTCCTAACAGGTCATATATTACTTTCAATTCTACTCGAGTGTGCTCTCAGTTTTGTTTATTTGACTTGTTGGTGGGTTCTTCGTTCTACATTATGGATTTGGCTGTCGTTTTAATGTATTGCGAACTGAAAATATTTCATTTCCATTTCTATTTAGATTATCACATGTACATGATGTATTTACTCAATTGCGTAGAATTACAGTATTGAACTTTTGATGTTATTAAATGGTTGTGGAATTCTGCTATAATCTTCTCTTCTATCGGACCCGGGAGATTTATGCCCAAATATTGCTTTCATGCTTATTTCTTCCTAAGTTTTCTTGCACTTTACCGAGCTATAACATAGGAAAATGACATACTAATTGGTCTAAGCTTATACGAATGGAAGCTTAGAATTTGCAACTAAATGTTTAAGAGAAGAATGGTCCTGTCAATTAAGCAAGCATGAATTTCTTTGTGGCTTACAAATTTTAAAGGGGGTTTGGGGTCTCCTCATCCAAGCCCAAACTGAGTATATGACTAAGATGACTATTCCATCATTCATCCCTCGAGTATCACTTTCTTTTTCCTTTCCTTTTTTCCCCTTTTTTCTTTTGAAAAGTTGAGTATCAGAGAGGCTACTTGTTAAGAAGTCAATTTTGGCATGTATGTTTCTTTCTAAATTCTGTTACTGTTTTGCGTTACTCTTGAGAGATTGAGTTTGAATATTTCAAATTGCAGGGAGGAAAAAGCACACTGGAAAATTGTCAGGTTTTGCAGGTAATAGTCCTAATGACTTTCCCTTATGCCATCCAAACTTCATTTAATACCATACTCAACCTCGCTTAGTTTAAGCATTATATACTTGAATTTGATTAGTTTAGGCATTATTCCTTCAAACTAACTGGACTAAGAGAGTATTATATTAAAGAGGACAAAAATGTTATTGTGCATATTTAAGGAATGAAGAAATAATTAACATACGTGGTCATGTTCTCGGAGTTTCTTTGGTAGCTACTGGTTGTTATGATGCTTAATAATGTGTGAGGTGCTGATACAAAGAAGTTCTTAATGCTTAGTTGACTGTGCTTATGACTTCGATTATTATGTTGCCTCCCTCTCTCACACACTTTCTTTGAAGTACCGTAGGATAAAAATTGTTCTCTCAGTTGGCTGATCATCCTTGATTGTTCTTTAACCTGGTATCTGTCTTTAGATTAAAGAGTTTACTATAGTAACTTACTTGCTAGGTTATAACTTAAATTCTCTATTCAGATATTCTATCTATCATGTGTTAGAGAACACCCTTTTTTTTTTCACTTGATGTTGTTTATTTCTAAGGACTCGATTTACATTCTTGTAAAGTCGGGGGTTACTGATCTGGGACGGAAGCACGATCACATAGCATTCTGGCTAATACACTTACTGTGCATTTAGATTAACTTTCTAAGTAGTTTTAGAGGGCAAAAAAGTGTAATATATATTTAAAAATTACTGTAAAGTGTTTGAATTTGATTATCGAAAAGTGATTATAAGTAATTGATCGGGAATTACTTCATTGTTTTTTGACATTTGTAGAACCACTTCTAGATATAGTGCAAGAAAACAAACTTGATTATAATCACTTTTAAGAAAATGTAACCAAAGATTTTAATTAAATTTCTTATAATGAGTGTTCTAAGAAAGATTTCTTTAAATACATTTATACCACACAATCATTAAAATGTTTAAATACCTTCCTGAAATATCATTGCTAATGCTAGAGGTCAAGAACCACAACAACCACATATACTTTGGTTTTGCTAGCATGTTTGTGTTCGACACATGTTGGACACTTAGACACGTACTAAACACGTGTTAGCACAATAGATATATATTAGACTTTAGTTGTACAAAGTCAGCATAGGTCTAACATTTTTTTAGATACATATCGAACACTTTTAAGTATCCTAAATAGACACATGACAGTATAGTACAAAAATATAAATTTTGAGAGTAAAATACATCAAACTTTTTTAAGCATATAAATGCATAATTTATTGACTTTGGATTTCCTTCTTGTATAAAACTGATATATATTTTAATAAACGTGTCCTAGAGGATGTGTCCTTGTTCTAGTTTTTAAAAAATGATGTGTCACCGTATCTGTCATATATGTATCTGTATCCGTGCTTATTAGGCTAAGAGTGAGTGGTTTTTAGAAAAAAAAAACATTACTTCCAAGAAAGAATTCTTATTTTCGTTTGATGACTGTATCATCTACAATTTAGGCAACTGTTAATCGATCCAAGGGAAACCGTACTGAACTTTCAAGAGCAGAACTAATTCAGAAAAGCTCTTACTGCCGGGTTTCAGGTACACTAGTTTTATTTAACTGCAATAGATTATGATTTACACCTTGGTAATGATATCATATGGCCAATTGGTTTAAATCACTTACAGGTCGAGACATGGACCTTCTTGAACTGTCTGCCTATGGCAATGTACATCGTGGACAAGACTCAGGAGGGTGCAGAATTCAGTGACTCATCGAGTTATTATATTATTATATTATTATCTTTAGTAGAATTGATTCCAGTCTGATACATGGAAACTTAATAACAAAAGATTGAAATGAAAAAAGTAGGGAATTTTTGTTATGTTCTTATTTCATTCCTTTATGCGTATCGGGTATGAACGAATTGCGTATGCAAACGAGCTCATTGATTTCATAGTAACATGTTTGATTTGTGTAGATCCTATGATTGAGAGTATGTGCAAGCTGTGAATGCATTTGTAAAGTTAAAATTCGTAGCAATCCCACTGTGAGGCAG

mRNA sequence

CCACTTCCCATTATTACCGCTCAAATTATCCGCCAACGACCGAATGATGAGATGAGGTCGAGCAAAGAATCGAAGAAGAAAACTCGCCCCTCATCACCTCTCAGGGACCGAACCAGTCCTTCAACGAGGTTCGAATCGAGACGTCATGGGTCTAACTCATCGAGGCTCAGCCCCTCTACTTCCCTTCTGGACCGTGACCTTGTCACCAGCGAAGCCAATCTCCTCGGAGACCTAAAACTCTCTCCCGACGACTCAGTTTCAGACTACAATCCCCGGAGCTTTCCTTACAGTGTGAAGCAGCAATGTTGGGATAAGGCCGAGAAGATTAAAGGAAGGGACCCAGATCGGTGGCGCCGAGATGCTCTTGGTAACACTGTTTTCCGAAAGCTTGTTGGCTGCCCCGGTTGTCTTTGTCATGACTATGATCATATTTTGCCTTACTCTAAGGGAGGAAAAAGCACACTGGAAAATTGTCAGGTTTTGCAGGCAACTGTTAATCGATCCAAGGGAAACCGTACTGAACTTTCAAGAGCAGAACTAATTCAGAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGACCTTCTTGAACTGTCTGCCTATGGCAATGTACATCGTGGACAAGACTCAGGAGGGTGCAGAATTCAGTGACTCATCGAGTTATTATATTATTATATTATTATCTTTAGTAGAATTGATTCCAGTCTGATACATGGAAACTTAATAACAAAAGATTGAAATGAAAAAAGTAGGGAATTTTTGTTATGTTCTTATTTCATTCCTTTATGCGTATCGGGTATGAACGAATTGCGTATGCAAACGAGCTCATTGATTTCATAGTAACATGTTTGATTTGTGTAGATCCTATGATTGAGAGTATGTGCAAGCTGTGAATGCATTTGTAAAGTTAAAATTCGTAGCAATCCCACTGTGAGGCAG

Coding sequence (CDS)

ATGAGGTCGAGCAAAGAATCGAAGAAGAAAACTCGCCCCTCATCACCTCTCAGGGACCGAACCAGTCCTTCAACGAGGTTCGAATCGAGACGTCATGGGTCTAACTCATCGAGGCTCAGCCCCTCTACTTCCCTTCTGGACCGTGACCTTGTCACCAGCGAAGCCAATCTCCTCGGAGACCTAAAACTCTCTCCCGACGACTCAGTTTCAGACTACAATCCCCGGAGCTTTCCTTACAGTGTGAAGCAGCAATGTTGGGATAAGGCCGAGAAGATTAAAGGAAGGGACCCAGATCGGTGGCGCCGAGATGCTCTTGGTAACACTGTTTTCCGAAAGCTTGTTGGCTGCCCCGGTTGTCTTTGTCATGACTATGATCATATTTTGCCTTACTCTAAGGGAGGAAAAAGCACACTGGAAAATTGTCAGGTTTTGCAGGCAACTGTTAATCGATCCAAGGGAAACCGTACTGAACTTTCAAGAGCAGAACTAATTCAGAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGACCTTCTTGAACTGTCTGCCTATGGCAATGTACATCGTGGACAAGACTCAGGAGGGTGCAGAATTCAGTGA

Protein sequence

MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ

Homology

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BLAST of CmaCh11G001400 vs. TrEMBL
Match: A0A0A0LUI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009800 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.0e-98
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGD 60
           MR SKESKKKTRPSSPLRDRT   T  ESR +GS+ S LSPS SLLDRDLVT E++LLGD
Sbjct: 1   MRRSKESKKKTRPSSPLRDRTGSPTSLESRPYGSHPSSLSPSASLLDRDLVTGESSLLGD 60

Query: 61  LKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL 120
           LK SPDDSVS+YNPRSFP+SVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL
Sbjct: 61  LKFSPDDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL 120

Query: 121 CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLL 180
           CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLL
Sbjct: 121 CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLL 180

Query: 181 ELSAYGNVHRGQDSGGCRIQ 201
           ELSAYGNVHRGQDSGGCRIQ
Sbjct: 181 ELSAYGNVHRGQDSGGCRIQ 200

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BLAST of CmaCh11G001400 vs. TrEMBL
Match: W9R5K8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008598 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-79
Identity = 154/202 (76.24%), Postives = 172/202 (85.15%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGD 60
           MR  KESK+++RPSSP++D+T+  +R+E R   S ++   P  SLLDRDLVT +  LL +
Sbjct: 1   MRPRKESKRRSRPSSPIKDKTTAPSRYEERSPRSRTAM--PGVSLLDRDLVTDDITLLEE 60

Query: 61  LKLSPD--DSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPG 120
           L +S D  +S S+ NPRSFPYSVKQQCW+KAEKIKGRDPDRWRRDALGN VFRKLVGCPG
Sbjct: 61  LSVSQDLNNSSSNLNPRSFPYSVKQQCWEKAEKIKGRDPDRWRRDALGNIVFRKLVGCPG 120

Query: 121 CLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD 180
           CLCHDYDHI+PYSKGG  TLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD
Sbjct: 121 CLCHDYDHIIPYSKGGPGTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD 180

Query: 181 LLELSAYGNVHRGQDSGGCRIQ 201
           LLELSAYGNV   QDSGGCRIQ
Sbjct: 181 LLELSAYGNVRCPQDSGGCRIQ 200

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BLAST of CmaCh11G001400 vs. TrEMBL
Match: F6GT71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06320 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.4e-74
Identity = 152/204 (74.51%), Postives = 168/204 (82.35%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSS-RLSPS-TSLLDRDLVTSE--AN 60
           MR  KE ++    SSP RDR    + FE R  GS S+ RLSPS TSLLD   +T +  A 
Sbjct: 1   MRPIKERRRSR--SSPARDRPIGPSGFEPRPSGSRSTTRLSPSSTSLLDTPFITEDEDAT 60

Query: 61  LLGDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGC 120
           L  +LK+SP+ +   +NPRSFPYSVKQQCW+KAEKIKGRDPDRWRRD LGN VFRKLVGC
Sbjct: 61  LFDNLKISPNPN---FNPRSFPYSVKQQCWEKAEKIKGRDPDRWRRDPLGNIVFRKLVGC 120

Query: 121 PGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRD 180
           PGCLCHDYDHI+PYSKGGKSTLENCQVLQATVNRSKGNRTE+S+A+LIQKSSYCRVSGRD
Sbjct: 121 PGCLCHDYDHIVPYSKGGKSTLENCQVLQATVNRSKGNRTEISKADLIQKSSYCRVSGRD 180

Query: 181 MDLLELSAYGNVHRGQDSGGCRIQ 201
           MDLLELSAYGNV RGQDSGGC IQ
Sbjct: 181 MDLLELSAYGNVRRGQDSGGCTIQ 199

[Close]

BLAST of CmaCh11G001400 vs. TrEMBL
Match: M5WPR3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020986mg PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 148/202 (73.27%), Postives = 167/202 (82.67%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTS-PSTRFE-SRRHGSNSSRLSPSTSLLDRDLVTSEANLL 60
           MR SKE K+++RPSSPLRDRT+ PS+ FE S    S +SRL+   SLL+RDL       L
Sbjct: 1   MRPSKEPKRRSRPSSPLRDRTAAPSSGFERSSSPKSRASRLTSPVSLLNRDLEE-----L 60

Query: 61  GDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPG 120
            +L  S     S+ NPR FPY+VKQQCW+KAEKI+GRDPDRWRRD+LGNTVFRKLVGCPG
Sbjct: 61  QELATS-----SNTNPRIFPYNVKQQCWEKAEKIRGRDPDRWRRDSLGNTVFRKLVGCPG 120

Query: 121 CLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD 180
           CLCHDYDHI+PYSKGG+STL+NCQVLQATVNRSKGNRTE SRAELIQKSSYCRVSGRDMD
Sbjct: 121 CLCHDYDHIVPYSKGGQSTLDNCQVLQATVNRSKGNRTEFSRAELIQKSSYCRVSGRDMD 180

Query: 181 LLELSAYGNVHRGQDSGGCRIQ 201
           L+ELSAYGNV    +SGGCRIQ
Sbjct: 181 LIELSAYGNVRHAPNSGGCRIQ 192

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BLAST of CmaCh11G001400 vs. TrEMBL
Match: A0A103YC95_CYNCS (HNH endonuclease OS=Cynara cardunculus var. scolymus GN=Ccrd_015242 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.4e-71
Identity = 142/202 (70.30%), Postives = 161/202 (79.70%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANL--L 60
           M    + K+++  SSP R+    +T        S    ++PS +LLD +LVT + +L   
Sbjct: 27  MNPRGKGKRRSSSSSPTRNHRRTTT-------SSGVPLITPSATLLDTELVTEDDDLAYF 86

Query: 61  GDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPG 120
            DL +SP D  S  NPRSFPYSVKQQCW+KAEKIKGRDPDRWRRD LGNT+FRKLVGCPG
Sbjct: 87  RDLTISPPDKFS--NPRSFPYSVKQQCWEKAEKIKGRDPDRWRRDPLGNTIFRKLVGCPG 146

Query: 121 CLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD 180
           CLCHDYDHI+PYSKGGKSTLENCQVLQATVNRSKGNRTE+SRA+LIQKSSYCRVSGRDMD
Sbjct: 147 CLCHDYDHIVPYSKGGKSTLENCQVLQATVNRSKGNRTEMSRADLIQKSSYCRVSGRDMD 206

Query: 181 LLELSAYGNVHRGQDSGGCRIQ 201
           LLELSAYGNV RGQDSGGC +Q
Sbjct: 207 LLELSAYGNVRRGQDSGGCSMQ 219

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BLAST of CmaCh11G001400 vs. TAIR10
Match: AT3G47490.1 (AT3G47490.1 HNH endonuclease)

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-65
Identity = 124/190 (65.26%), Postives = 145/190 (76.32%), Query Frame = 1


Query: 14  SSPLRDRTSPSTRFESRRHG-SNSSRLSPSTSLLDRDLVTSEANLLGDLKLSPDDSVSDY 73
           SSP + R   S+   +R  G +   ++  S +LLDR+          ++ L P     D 
Sbjct: 55  SSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLDRE----------EMGLFPGSGYGDP 114

Query: 74  NP--RSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCLCHDYDHILPY 133
           NP  RSFPYSVKQQCW+KAEKIKGRDP+RWRRD LGN VFRKLVGCPGCLCHDYDHI+PY
Sbjct: 115 NPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPY 174

Query: 134 SKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGNVHR 193
           SKGGKSTLENCQVLQA VNRSKGN+T++SR+ELIQ+SSYCRV+GRDMDL+EL+AYGNV R
Sbjct: 175 SKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQR 234

Query: 194 GQDSGGCRIQ 201
              S GCRIQ
Sbjct: 235 APTSSGCRIQ 234

[Close]

BLAST of CmaCh11G001400 vs. TAIR10
Match: AT1G18680.1 (AT1G18680.1 HNH endonuclease domain-containing protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-27
Identity = 53/131 (40.46%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 68  SVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCLCHDYDHI 127
           S  +  PR F    K +CW  A+ + GR P+RWR+D  GN V ++   C GCLC +YDHI
Sbjct: 34  SNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHI 93

Query: 128 LPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLLELSAYGN 187
           +PYSKGG+S  ENCQ+LQ  VNR K  +  +    L   S   + + +++D++E++ YG+
Sbjct: 94  VPYSKGGESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGD 153

Query: 188 VHRGQDSGGCR 199
           V R      C+
Sbjct: 154 VLRPGKECRCK 164

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BLAST of CmaCh11G001400 vs. NCBI nr
Match: gi|659105935|ref|XP_008453210.1| (PREDICTED: uncharacterized protein LOC103493997 [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 4.4e-98
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGD 60
           MR SKESKKKTRPSSPLRDRT   T  ES R+GS+ S LSPS SLLDRDLVT E+NLLGD
Sbjct: 1   MRRSKESKKKTRPSSPLRDRTGAPTSLESTRYGSHPSSLSPSASLLDRDLVTGESNLLGD 60

Query: 61  LKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL 120
           LK SP+DSVS+YNPRSFP+SVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL
Sbjct: 61  LKFSPNDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL 120

Query: 121 CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLL 180
           CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLL
Sbjct: 121 CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLL 180

Query: 181 ELSAYGNVHRGQDSGGCRIQ 201
           ELSAYGNVHRGQDSGGCRIQ
Sbjct: 181 ELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of CmaCh11G001400 vs. NCBI nr
Match: gi|449440796|ref|XP_004138170.1| (PREDICTED: uncharacterized protein LOC101222461 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 5.8e-98
Identity = 181/200 (90.50%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGD 60
           MR SKESKKKTRPSSPLRDRT   T  ESR +GS+ S LSPS SLLDRDLVT E++LLGD
Sbjct: 1   MRRSKESKKKTRPSSPLRDRTGSPTSLESRPYGSHPSSLSPSASLLDRDLVTGESSLLGD 60

Query: 61  LKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL 120
           LK SPDDSVS+YNPRSFP+SVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL
Sbjct: 61  LKFSPDDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCL 120

Query: 121 CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMDLL 180
           CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTE+SRAELIQKSSYCRVSGRDMDLL
Sbjct: 121 CHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLL 180

Query: 181 ELSAYGNVHRGQDSGGCRIQ 201
           ELSAYGNVHRGQDSGGCRIQ
Sbjct: 181 ELSAYGNVHRGQDSGGCRIQ 200

[Close]

BLAST of CmaCh11G001400 vs. NCBI nr
Match: gi|703074792|ref|XP_010089910.1| (hypothetical protein L484_008598 [Morus notabilis])

HSP 1 Score: 304.3 bits (778), Expect = 1.6e-79
Identity = 154/202 (76.24%), Postives = 172/202 (85.15%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTSPSTRFESRRHGSNSSRLSPSTSLLDRDLVTSEANLLGD 60
           MR  KESK+++RPSSP++D+T+  +R+E R   S ++   P  SLLDRDLVT +  LL +
Sbjct: 1   MRPRKESKRRSRPSSPIKDKTTAPSRYEERSPRSRTAM--PGVSLLDRDLVTDDITLLEE 60

Query: 61  LKLSPD--DSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPG 120
           L +S D  +S S+ NPRSFPYSVKQQCW+KAEKIKGRDPDRWRRDALGN VFRKLVGCPG
Sbjct: 61  LSVSQDLNNSSSNLNPRSFPYSVKQQCWEKAEKIKGRDPDRWRRDALGNIVFRKLVGCPG 120

Query: 121 CLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD 180
           CLCHDYDHI+PYSKGG  TLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD
Sbjct: 121 CLCHDYDHIIPYSKGGPGTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDMD 180

Query: 181 LLELSAYGNVHRGQDSGGCRIQ 201
           LLELSAYGNV   QDSGGCRIQ
Sbjct: 181 LLELSAYGNVRCPQDSGGCRIQ 200

[Close]

BLAST of CmaCh11G001400 vs. NCBI nr
Match: gi|658042022|ref|XP_008356631.1| (PREDICTED: uncharacterized protein LOC103420347 [Malus domestica])

HSP 1 Score: 298.5 bits (763), Expect = 8.7e-78
Identity = 156/203 (76.85%), Postives = 175/203 (86.21%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTS-PSTRFESRRHGSNSSRLSPSTSLLDRDLVTSE--ANL 60
           MR SKESK+++RPSSPLRDRT+ PS RFE R   S+S     +++LL+RDLV ++  A  
Sbjct: 1   MRPSKESKRRSRPSSPLRDRTAAPSARFERR---SSSPPKPRASALLNRDLVVTDVTATT 60

Query: 61  LGDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCP 120
             + +L+   S ++ NPRSFPYSVKQQCWDKAEKIKGRDPDRWRRD LGNT+FRKLVGCP
Sbjct: 61  RFEEELATSSSFNN-NPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDPLGNTIFRKLVGCP 120

Query: 121 GCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDM 180
           GCLCHDYDHI+PYSKGG+STLENCQVLQATVNRSKGNRTE SRAELIQKSSYCRVSGRDM
Sbjct: 121 GCLCHDYDHIVPYSKGGQSTLENCQVLQATVNRSKGNRTEFSRAELIQKSSYCRVSGRDM 180

Query: 181 DLLELSAYGNVHRGQDSGGCRIQ 201
           DLLELSAYGNV RGQDSGGCRIQ
Sbjct: 181 DLLELSAYGNVRRGQDSGGCRIQ 199

[Close]

BLAST of CmaCh11G001400 vs. NCBI nr
Match: gi|694387032|ref|XP_009369284.1| (PREDICTED: uncharacterized protein LOC103958706 [Pyrus x bretschneideri])

HSP 1 Score: 297.0 bits (759), Expect = 2.5e-77
Identity = 155/203 (76.35%), Postives = 173/203 (85.22%), Query Frame = 1


Query: 1   MRSSKESKKKTRPSSPLRDRTS-PSTRFESRRHGSNSSRLSPSTSLLDRDLVTSE--ANL 60
           MR  KE K+++RPSSPLRDRT+ PS RFE R   S+S     +++LL+RDLV ++  A  
Sbjct: 1   MRPGKEPKRRSRPSSPLRDRTAAPSARFERR---SSSPPKPRASALLNRDLVVTDVTATT 60

Query: 61  LGDLKLSPDDSVSDYNPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCP 120
           L + +L+   S +  NPRSFPYSVKQQCWDKAEKIKGRDPDRWRRD LGNT+FRKLVGCP
Sbjct: 61  LFEEELATSSSFNS-NPRSFPYSVKQQCWDKAEKIKGRDPDRWRRDPLGNTIFRKLVGCP 120

Query: 121 GCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRAELIQKSSYCRVSGRDM 180
           GCLCHDYDHI+PYSKGG+STLENCQVLQATVNRSKGNRTE SRAELIQKSSYCRVSGRDM
Sbjct: 121 GCLCHDYDHIVPYSKGGQSTLENCQVLQATVNRSKGNRTEFSRAELIQKSSYCRVSGRDM 180

Query: 181 DLLELSAYGNVHRGQDSGGCRIQ 201
           DLLELSAYGNV RGQDSGGCRIQ
Sbjct: 181 DLLELSAYGNVRRGQDSGGCRIQ 199

The following BLAST results are available for this feature:

BLAST of CmaCh11G001400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUI5_CUCSA	4.0e-98	90.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009800 PE=4 SV=1	[more]
W9R5K8_9ROSA	1.1e-79	76.24	Uncharacterized protein OS=Morus notabilis GN=L484_008598 PE=4 SV=1	[more]
F6GT71_VITVI	2.4e-74	74.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06320 PE=4 SV=...	[more]
M5WPR3_PRUPE	1.7e-72	73.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020986mg PE=4 SV=1	[more]
A0A103YC95_CYNCS	1.4e-71	70.30	HNH endonuclease OS=Cynara cardunculus var. scolymus GN=Ccrd_015242 PE=4 SV=1	[more]

BLAST of CmaCh11G001400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47490.1	5.2e-65	65.26	HNH endonuclease	[more]
AT1G18680.1	1.9e-27	40.46	HNH endonuclease domain-containing protein	[more]

BLAST of CmaCh11G001400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105935\|ref\|XP_008453210.1\|	4.4e-98	90.50	PREDICTED: uncharacterized protein LOC103493997 [Cucumis melo]	[more]
gi\|449440796\|ref\|XP_004138170.1\|	5.8e-98	90.50	PREDICTED: uncharacterized protein LOC101222461 [Cucumis sativus]	[more]
gi\|703074792\|ref\|XP_010089910.1\|	1.6e-79	76.24	hypothetical protein L484_008598 [Morus notabilis]	[more]
gi\|658042022\|ref\|XP_008356631.1\|	8.7e-78	76.85	PREDICTED: uncharacterized protein LOC103420347 [Malus domestica]	[more]
gi\|694387032\|ref\|XP_009369284.1\|	2.5e-77	76.35	PREDICTED: uncharacterized protein LOC103958706 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001400.1	CmaCh11G001400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33427	FAMILY NOT NAMED	coord: 12..200 score: 1.4E
None	No IPR available	PANTHER	PTHR33427:SF3	SUBFAMILY NOT NAMED	coord: 12..200 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G001400	Cucsa.197760	Cucumber (Gy14) v1	cgycmaB0578
CmaCh11G001400	Cla019106	Watermelon (97103) v1	cmawmB136
CmaCh11G001400	Csa1G009800	Cucumber (Chinese Long) v2	cmacuB097
CmaCh11G001400	MELO3C017179	Melon (DHL92) v3.5.1	cmameB106
CmaCh11G001400	ClCG06G016150	Watermelon (Charleston Gray)	cmawcgB127
CmaCh11G001400	CSPI01G02350	Wild cucumber (PI 183967)	cmacpiB098
CmaCh11G001400	CmoCh11G001710	Cucurbita moschata (Rifu)	cmacmoB118
CmaCh11G001400	Lsi06G014590	Bottle gourd (USVL1VR-Ls)	cmalsiB129
CmaCh11G001400	Cp4.1LG04g14880	Cucurbita pepo (Zucchini)	cmacpeB149
CmaCh11G001400	MELO3C017179.2	Melon (DHL92) v3.6.1	cmamedB113
CmaCh11G001400	CsaV3_1G002400	Cucumber (Chinese Long) v3	cmacucB0112
CmaCh11G001400	Cla97C06G125720	Watermelon (97103) v2	cmawmbB131
CmaCh11G001400	Bhi02G000212	Wax gourd	cmawgoB0176
CmaCh11G001400	CsGy1G002390	Cucumber (Gy14) v2	cgybcmaB040
CmaCh11G001400	Carg18192	Silver-seed gourd	carcmaB0861

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G001400	Bottle gourd (USVL1VR-Ls)	cmalsiB109
CmaCh11G001400	Bottle gourd (USVL1VR-Ls)	cmalsiB111
CmaCh11G001400	Cucumber (Gy14) v2	cgybcmaB046
CmaCh11G001400	Melon (DHL92) v3.6.1	cmamedB087
CmaCh11G001400	Melon (DHL92) v3.6.1	cmamedB097
CmaCh11G001400	Silver-seed gourd	carcmaB0063
CmaCh11G001400	Silver-seed gourd	carcmaB0539
CmaCh11G001400	Silver-seed gourd	carcmaB0642
CmaCh11G001400	Cucumber (Chinese Long) v3	cmacucB0119
CmaCh11G001400	Cucumber (Chinese Long) v3	cmacucB0159
CmaCh11G001400	Watermelon (97103) v2	cmawmbB121
CmaCh11G001400	Watermelon (97103) v2	cmawmbB154
CmaCh11G001400	Wax gourd	cmawgoB0102
CmaCh11G001400	Wax gourd	cmawgoB0136
CmaCh11G001400	Wax gourd	cmawgoB0151
CmaCh11G001400	Cucurbita maxima (Rimu)	cmacmaB079
CmaCh11G001400	Cucurbita maxima (Rimu)	cmacmaB129
CmaCh11G001400	Cucurbita maxima (Rimu)	cmacmaB143
CmaCh11G001400	Cucumber (Gy14) v1	cgycmaB0261
CmaCh11G001400	Cucurbita moschata (Rifu)	cmacmoB107
CmaCh11G001400	Cucurbita moschata (Rifu)	cmacmoB127
CmaCh11G001400	Cucurbita moschata (Rifu)	cmacmoB140
CmaCh11G001400	Cucurbita moschata (Rifu)	cmacmoB158
CmaCh11G001400	Wild cucumber (PI 183967)	cmacpiB104
CmaCh11G001400	Cucumber (Chinese Long) v2	cmacuB105
CmaCh11G001400	Melon (DHL92) v3.5.1	cmameB089
CmaCh11G001400	Watermelon (Charleston Gray)	cmawcgB080
CmaCh11G001400	Watermelon (Charleston Gray)	cmawcgB118
CmaCh11G001400	Watermelon (97103) v1	cmawmB119
CmaCh11G001400	Cucurbita pepo (Zucchini)	cmacpeB127
CmaCh11G001400	Cucurbita pepo (Zucchini)	cmacpeB142